Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005474

Physical Location & Seq

Genomic Coordinates Forward (+)

1567340 .. 1569113

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1015500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAAGGGCCAAAGCAGCTATGCTCCACCTGCTTACGTTCCGTTGGGAATGTCGGATTCTGAATCAGCGATTGTGTTGTGCAGTGAAGACCCTCCCATGCAGCAAAGCAGCGGTGATGGGCCCAAACAATGGTCTTCTGGAATCTGCGCATGCTGTGACGATATGCAGAGCTGTACGCTATTTTTTGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

65

Amino Acids

6.76

Weight (kDa)

4.05

Isoelectric Point (pI)

99.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935
fragaria_vesca	FvH4_5g33900
malus_domestica	MD12G1015500.v1.1 MD12G1015600.v1.1 MD14G1013500.v1.1
prunus_persica	Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1
pyrus_communis	pycom12g01290 pycom14g01150
rosa_chinensis	RchiOBHm_Chr3g0495251
rosa_laevigata	RLG00000022634
rosa_multiflora	Rmu_sc0002433.1_g000013
rosa_roxburghii	Rroxscaffold_6G00390650
rosa_rugosa	Rorug03G0271500
rosa_samantha	Rh3AG320100 Rh3BG355100 Rh3CG352100 Rh3DG354100
rosa_wichuraiana	Rw3G027960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc16I	TGCGCA	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	18, 171
AluI	AGCT	2 cut(s)	18, 171
AoxI	GGCC	2 cut(s)	7, 119
ApaI	GGGCCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	15, 100, 108
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	7, 119, 120
AsuHPI	GGTGA	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	93, 126
BbvI	GCAGC	3 cut(s)	27, 112, 120
BccI	CCATC	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	16, 101, 109
BlsI	GCNGC	3 cut(s)	17, 102, 110
BmgT120I	GGNCC	3 cut(s)	7, 119, 120
BmiI	GGNNCC	1 cut(s)	121
BpiI	GAAGAC	2 cut(s)	93, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	27, 112, 120
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	9, 121
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	2 cut(s)	9, 121
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	2 cut(s)	9, 121
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 29
BstNSI	RCATGY	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	27, 112, 120
BstV2I	GAAGAC	2 cut(s)	93, 126
BsuRI	GGCC	2 cut(s)	9, 121
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	7, 119, 120
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	97, 150
CviJI	RGCY	4 cut(s)	9, 18, 121, 171
CviKI_1	RGCY	4 cut(s)	9, 18, 121, 171
CviQI	GTAC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	100, 153
FaiI	YATR	4 cut(s)	21, 98, 151, 164
FatI	CATG	2 cut(s)	96, 149
Fnu4HI	GCNGC	3 cut(s)	16, 101, 109
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	16, 101, 109
FspI	TGCGCA	1 cut(s)	148
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	16, 101, 109
HaeIII	GGCC	2 cut(s)	9, 121
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	100, 153
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	56, 62, 141
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	2 cut(s)	55, 61
Hpy188III	TCNNGA	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	81, 100, 166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 29
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	100, 153
HspAI	GCGC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	2 cut(s)	42, 123
Lsp1109I	GCAGC	3 cut(s)	27, 112, 120
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	155
MboII	GAAGA	2 cut(s)	98, 126
MhlI	GDGCHC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	15, 29
NlaIII	CATG	2 cut(s)	100, 153
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	155
NsbI	TGCGCA	1 cut(s)	148
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	56, 62, 141
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	17, 102, 110
PspN4I	GGNNCC	1 cut(s)	121
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	3 cut(s)	7, 119, 120
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SatI	GCNGC	3 cut(s)	16, 101, 109
Sau96I	GGNCC	3 cut(s)	7, 119, 120
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	4 cut(s)	20, 31, 39, 173
SgeI	CNNG	4 cut(s)	41, 109, 150, 162
SphI	GCATGC	1 cut(s)	153
SsiI	CCGC	1 cut(s)	111
TaiI	ACGT	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	56, 62, 141
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	15, 100, 108
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	129
XceI	RCATGY	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.