Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005474

Physical Location & Seq

Genomic Coordinates Forward (+)

1082339 .. 1083294

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACTCATCTTATTTTGTGGGCACTGGTTAATACTGTCTGCTGCTTATTGACTGAGGGTCTGTTTTTGGGCATACCGGGATGCTTTGTTGCATGTTATGCTTGTGGCTACCGCAGTGCCCTAAGAACAAAGTATAATCTTCAGGAAGCGCCGTGTGGAGACTTTGTCACTCATTTTTTCTGCCATCTGTGTGCCATTTGTCAAGAGTACCGGGAGATCCGTGAAAAGTCTGATTCCGTCCCTCCTGACCTGAGTCTGGCTGTAGTTACACCCCCATCAGTCCAGACAATGGAACCAGGTCTCCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

104

Amino Acids

11.45

Weight (kDa)

5.43

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935
fragaria_vesca	FvH4_5g33900
malus_domestica	MD12G1015500.v1.1 MD12G1015600.v1.1 MD14G1013500.v1.1
prunus_persica	Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1
pyrus_communis	pycom12g01290 pycom14g01150
rosa_chinensis	RchiOBHm_Chr3g0495251
rosa_laevigata	RLG00000022634
rosa_multiflora	Rmu_sc0002433.1_g000013
rosa_roxburghii	Rroxscaffold_6G00390650
rosa_rugosa	Rorug03G0271500
rosa_samantha	Rh3AG320100 Rh3BG355100 Rh3CG352100 Rh3DG354100
rosa_wichuraiana	Rw3G027960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	256, 289
AhdI	GACNNNNNGTC	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	295
AloI	GAACNNNNNNTCC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	153, 305
AlwI	GGATC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	151
AsuC2I	CCSGG	2 cut(s)	78, 212
BaeGI	GKGCMC	2 cut(s)	25, 121
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	2 cut(s)	192, 283
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	2 cut(s)	78, 212
BcoDI	GTCTC	2 cut(s)	153, 305
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	3 cut(s)	78, 212, 297
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	78, 212, 297
BmsI	GCATC	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	78, 212
BsaI	GGTCTC	1 cut(s)	305
BsaXI	ACNNNNNCTCC	3 cut(s)	150, 180, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 289
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	256, 289
BseMII	CTCAG	2 cut(s)	45, 242
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	2 cut(s)	25, 121
BseXI	GCAGC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	77, 211
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	256, 289
BsmAI	GTCTC	2 cut(s)	153, 305
BsmFI	GGGAC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	25, 121
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	46, 243
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	54, 122, 251
BstF5I	GGATG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	153, 305
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	96
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	76, 210, 295
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	2 cut(s)	25, 121
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	23, 121
CfoI	GCGC	1 cut(s)	151
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	2 cut(s)	108, 260
CviKI_1	RGCY	2 cut(s)	108, 260
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	54, 122, 251
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DriI	GACNNNNNGTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	96
FaiI	YATR	4 cut(s)	74, 94, 99, 135
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	43
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	152
HapII	CCGG	2 cut(s)	77, 211
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	4, 233, 253
HpaII	CCGG	2 cut(s)	77, 211
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	143, 203, 245, 283
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	54, 122, 251
Hsp92II	CATG	1 cut(s)	96
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	11, 90, 128, 224, 242, 258, 263, 282, 296
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	71
MabI	ACCWGGT	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	166, 265
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	25, 121
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	2 cut(s)	49, 252
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	2 cut(s)	77, 211
MspR9I	CCNGG	3 cut(s)	78, 212, 297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	78, 212
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PshAI	GACNNNNGTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	216
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	3 cut(s)	78, 212, 297
SduI	GDGCHC	2 cut(s)	25, 121
SetI	ASST	2 cut(s)	252, 301
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	189
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	76, 210, 295
TaaI	ACNGT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	30, 121
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	2 cut(s)	209, 226
TspRI	CASTG	2 cut(s)	30, 121
Tth111I	GACNNNGTC	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	289
XceI	RCATGY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.