Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002433.1

Orthogroup ID

OG0005474

Physical Location & Seq

Genomic Coordinates Forward (+)

83675 .. 87854

Gene Structure 4180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002433.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggagaagctatcggtggtggagtcgaagctggcgaagttgcttccaaaggagaagagtccgaataaggaggatccagggtgtgggctgatgttgaagctagactacgacgacgttttgagtgcttggtcagacaaagcgtcgtcgttttcggaggatttgcagggcggcgctgatggaaaccatgtctctatatgttccattacgaacaaagaagataagccagagtcctctgaggatgggtgggcggggaggattctagatcttgatgtccggcttcctctgagcacgctgatggtggcgggtactggatacagatcatttgttcgtcgcagaaagatgaagagccaaagcagttatgcacctccgtcttatattcccttgggccaatcagattcgggatcacctgttgttttacgcaatgaagaccatcccaagcagcaaaataatgtcgatcggccgatacaatggtcttctggaatttgcgcatgttgtgatgatacgcagagctgttgtataggtttattttgtccttgctatctgttcggaaagaatgcagagtttctgggctctgggacattaatgggctcctgcacgactcattttattctgtgggtacttgttaataccgtctgttgcttattaactgatggccttattttgggtataccgggatgctttgttgcatgttatgcttgtggctaccgcagggcactaagatcaaaatataatctccaggaagcaccgtgtggagactttattactcattttttctgccatctgtgtgcaatttgtcaagagtaccgggagatccgtgaaaagtctgctgaatctggccctggtgatctgaatctagccatagttacagccccagcagtccagacaatggaaccagggcttgacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

302

Amino Acids

33.02

Weight (kDa)

5.46

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935
fragaria_vesca	FvH4_5g33900
malus_domestica	MD12G1015500.v1.1 MD12G1015600.v1.1 MD14G1013500.v1.1
prunus_persica	Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1
pyrus_communis	pycom12g01290 pycom14g01150
rosa_chinensis	RchiOBHm_Chr3g0495251
rosa_laevigata	RLG00000022634
rosa_multiflora	Rmu_sc0002433.1_g000013
rosa_roxburghii	Rroxscaffold_6G00390650
rosa_rugosa	Rorug03G0271500
rosa_samantha	Rh3AG320100 Rh3BG355100 Rh3CG352100 Rh3DG354100
rosa_wichuraiana	Rw3G027960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	487
AccB7I	CCANNNNNTGG	2 cut(s)	83, 886
AccI	GTMKAC	1 cut(s)	667
AciI	CCGC	4 cut(s)	168, 248, 302, 706
AclWI	GGATC	4 cut(s)	68, 81, 409, 805
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	749
AfaI	GTAC	3 cut(s)	307, 618, 803
AfiI	CCNNNNNNNGG	3 cut(s)	83, 661, 886
AgsI	TTSAA	1 cut(s)	97
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	4 cut(s)	76, 735, 838, 892
AluBI	AGCT	4 cut(s)	10, 31, 100, 510
AluI	AGCT	4 cut(s)	10, 31, 100, 510
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	193, 747
AlwI	GGATC	4 cut(s)	68, 81, 409, 805
AoxI	GGCC	4 cut(s)	385, 458, 652, 835
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	1 cut(s)	480
AseI	ATTAAT	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	173, 488
AspS9I	GGNCC	2 cut(s)	385, 836
AsuC2I	CCSGG	2 cut(s)	672, 806
AsuHPI	GGTGA	2 cut(s)	396, 854
BaeGI	GKGCMC	1 cut(s)	715
BaeI	ACNNNNGTAYC	2 cut(s)	455, 488
BamHI	GGATCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	572, 590
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	2 cut(s)	432, 465
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	6 cut(s)	170, 233, 289, 438, 644, 786
BciT130I	CCWGG	4 cut(s)	78, 737, 840, 894
BciVI	GTATCC	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	672, 806
BcoDI	GTCTC	2 cut(s)	193, 747
BfaI	CTAG	3 cut(s)	101, 260, 854
BfoI	RGCGCY	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	2 cut(s)	169, 440
BlsI	GCNGC	2 cut(s)	170, 441
Bme1390I	CCNGG	6 cut(s)	78, 672, 737, 806, 840, 894
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	385, 836
BmiI	GGNNCC	3 cut(s)	75, 589, 891
BmrFI	CCNGG	6 cut(s)	78, 672, 737, 806, 840, 894
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	432, 465
BpmI	CTGGAG	1 cut(s)	719
BpuMI	CCSGG	2 cut(s)	672, 806
BsaBI	GATNNNNATC	2 cut(s)	316, 849
BsaJI	CCNNGG	4 cut(s)	77, 381, 838, 893
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 661, 886
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	427
Bse8I	GATNNNNATC	2 cut(s)	316, 849
BseBI	CCWGG	4 cut(s)	78, 737, 840, 894
BseDI	CCNNGG	4 cut(s)	77, 381, 838, 893
BseGI	GGATG	3 cut(s)	244, 430, 680
BseJI	GATNNNNATC	2 cut(s)	316, 849
BseLI	CCNNNNNNNGG	3 cut(s)	83, 661, 886
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	225, 275
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	715
BseX3I	CGGCCG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	871
BsgI	GTGCAG	1 cut(s)	577
Bsh1285I	CGRYCG	2 cut(s)	457, 461
BshFI	GGCC	4 cut(s)	387, 460, 654, 837
BsiEI	CGRYCG	2 cut(s)	457, 461
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	3 cut(s)	274, 671, 805
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	3 cut(s)	83, 661, 886
BsmAI	GTCTC	2 cut(s)	193, 747
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	4 cut(s)	387, 460, 654, 837
Bsp1286I	GDGCHC	4 cut(s)	290, 572, 590, 715
Bsp143I	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
BspACI	CCGC	4 cut(s)	168, 248, 302, 706
BspANI	GGCC	4 cut(s)	387, 460, 654, 837
BspCNI	CTCAG	2 cut(s)	226, 276
BspLI	GGNNCC	3 cut(s)	75, 589, 891
BspPI	GGATC	4 cut(s)	68, 81, 409, 805
BspQI	GCTCTTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	77, 381, 838, 893
BssMI	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
BssNAI	GTATAC	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	381
Bst1107I	GTATAC	1 cut(s)	668
Bst2UI	CCWGG	4 cut(s)	78, 737, 840, 894
Bst4CI	ACNGT	2 cut(s)	631, 747
Bst6I	CTCTTC	2 cut(s)	50, 338
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	33, 290
BstDEI	CTNAG	3 cut(s)	234, 284, 716
BstF5I	GGATG	3 cut(s)	244, 430, 680
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	173, 488
BstKTI	GATC	8 cut(s)	76, 265, 320, 404, 457, 722, 813, 847
BstMAI	GTCTC	2 cut(s)	193, 747
BstMBI	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
BstMCI	CGRYCG	2 cut(s)	457, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	4 cut(s)	78, 737, 840, 894
BstNSI	RCATGY	2 cut(s)	492, 690
BstSCI	CCNGG	6 cut(s)	76, 670, 735, 804, 838, 892
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	2 cut(s)	432, 465
BstX2I	RGATCY	3 cut(s)	73, 262, 810
BstYI	RGATCY	3 cut(s)	73, 262, 810
BstZ17I	GTATAC	1 cut(s)	668
BstZI	CGGCCG	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	387, 460, 654, 837
BtsCI	GGATG	3 cut(s)	244, 430, 680
Cac8I	GCNNGC	2 cut(s)	33, 290
CfoI	GCGC	2 cut(s)	173, 488
Cfr13I	GGNCC	2 cut(s)	385, 836
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	306, 617, 802
CviAII	CATG	3 cut(s)	185, 489, 687
CviQI	GTAC	3 cut(s)	306, 617, 802
DdeI	CTNAG	3 cut(s)	234, 284, 716
DpnI	GATC	8 cut(s)	75, 264, 319, 403, 456, 721, 812, 846
DpnII	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
DraIII	CACNNNGTG	1 cut(s)	749
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	458
EagI	CGGCCG	1 cut(s)	458
Eam1104I	CTCTTC	2 cut(s)	50, 338
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	2 cut(s)	50, 338
EclXI	CGGCCG	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	2 cut(s)	572, 590
Eco52I	CGGCCG	1 cut(s)	458
EcoRII	CCWGG	4 cut(s)	76, 735, 838, 892
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	572, 590
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	188, 492, 690
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	3 cut(s)	184, 488, 686
FauI	CCCGC	2 cut(s)	241, 295
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	169, 440
FokI	GGATG	3 cut(s)	251, 417, 687
FriOI	GRGCYC	2 cut(s)	572, 590
Fsp4HI	GCNGC	2 cut(s)	169, 440
FspBI	CTAG	3 cut(s)	101, 260, 854
FspI	TGCGCA	1 cut(s)	487
GlaI	GCGC	2 cut(s)	172, 487
GluI	GCNGC	2 cut(s)	169, 440
GsaI	CCCAGC	1 cut(s)	875
GsuI	CTGGAG	1 cut(s)	719
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	4 cut(s)	387, 460, 654, 837
HapII	CCGG	3 cut(s)	274, 671, 805
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	2 cut(s)	173, 488
Hin1II	CATG	3 cut(s)	188, 492, 690
Hin6I	GCGC	2 cut(s)	171, 486
HinP1I	GCGC	2 cut(s)	171, 486
HinfI	GANTC	8 cut(s)	23, 58, 227, 256, 395, 598, 830, 850
HpaII	CCGG	3 cut(s)	274, 671, 805
HphI	GGTGA	2 cut(s)	396, 854
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	8 cut(s)	63, 133, 154, 235, 285, 394, 548, 849
Hpy188III	TCNNGA	6 cut(s)	260, 266, 399, 477, 797, 880
Hpy8I	GTNNAC	1 cut(s)	668
Hpy99I	CGWCG	5 cut(s)	113, 116, 145, 148, 333
HpyCH4III	ACNGT	2 cut(s)	631, 747
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	6 cut(s)	163, 362, 557, 594, 686, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	3 cut(s)	234, 284, 716
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	188, 492, 690
HspAI	GCGC	2 cut(s)	171, 486
Kzo9I	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	101, 260, 854
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	862
MalI	GATC	8 cut(s)	75, 264, 319, 403, 456, 721, 812, 846
MboI	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
MboII	GAAGA	5 cut(s)	67, 227, 355, 437, 465
MflI	RGATCY	3 cut(s)	73, 262, 810
MhlI	GDGCHC	4 cut(s)	290, 572, 590, 715
MluCI	AATT	2 cut(s)	480, 789
MlyI	GAGTC	4 cut(s)	32, 67, 236, 592
MnlI	CCTC	7 cut(s)	64, 148, 229, 241, 246, 291, 375
MseI	TTAA	3 cut(s)	581, 624, 644
MslI	CAYNNNNRTG	2 cut(s)	293, 783
MspI	CCGG	3 cut(s)	274, 671, 805
MspR9I	CCNGG	6 cut(s)	78, 672, 737, 806, 840, 894
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	4 cut(s)	78, 737, 840, 894
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	2 cut(s)	672, 806
NdeII	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
NlaIII	CATG	3 cut(s)	188, 492, 690
NlaIV	GGNNCC	3 cut(s)	75, 589, 891
NsbI	TGCGCA	1 cut(s)	487
NspI	RCATGY	2 cut(s)	492, 690
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	256, 395, 830, 850
PflMI	CCANNNNNTGG	2 cut(s)	83, 886
PfoI	TCCNGGA	1 cut(s)	735
PkrI	GCNGC	2 cut(s)	170, 441
Ple19I	CGATCG	1 cut(s)	457
PleI	GAGTC	4 cut(s)	31, 66, 235, 592
PpsI	GAGTC	4 cut(s)	31, 66, 235, 592
PshBI	ATTAAT	1 cut(s)	581
Psp6I	CCWGG	4 cut(s)	76, 735, 838, 892
PspFI	CCCAGC	1 cut(s)	871
PspGI	CCWGG	4 cut(s)	76, 735, 838, 892
PspN4I	GGNNCC	3 cut(s)	75, 589, 891
PspPI	GGNCC	2 cut(s)	385, 836
PsuI	RGATCY	3 cut(s)	73, 262, 810
PvuI	CGATCG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	307, 618, 803
RsaNI	GTAC	3 cut(s)	306, 617, 802
RseI	CAYNNNNRTG	2 cut(s)	293, 783
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	581, 624, 644
SatI	GCNGC	2 cut(s)	169, 440
Sau3AI	GATC	8 cut(s)	73, 262, 317, 401, 454, 719, 810, 844
Sau96I	GGNCC	2 cut(s)	385, 836
SchI	GAGTC	4 cut(s)	32, 67, 236, 592
ScrFI	CCNGG	6 cut(s)	78, 672, 737, 806, 840, 894
SduI	GDGCHC	4 cut(s)	290, 572, 590, 715
SetI	ASST	8 cut(s)	12, 33, 102, 117, 367, 409, 512, 523
SfaNI	GCATC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	293, 783
Sse9I	AATT	2 cut(s)	480, 789
SsiI	CCGC	4 cut(s)	168, 248, 302, 706
SspMI	CTAG	3 cut(s)	101, 260, 854
StyD4I	CCNGG	6 cut(s)	76, 670, 735, 804, 838, 892
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	631, 747
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	26, 453
TasI	AATT	2 cut(s)	480, 789
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	4 cut(s)	256, 395, 830, 850
Tru1I	TTAA	3 cut(s)	581, 624, 644
Tru9I	TTAA	3 cut(s)	581, 624, 644
TseI	GCWGC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	356, 438
TspGWI	ACGGA	2 cut(s)	357, 803
Van91I	CCANNNNNTGG	2 cut(s)	83, 886
VspI	ATTAAT	1 cut(s)	581
XapI	RAATTY	1 cut(s)	480
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	2 cut(s)	492, 690
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	3 cut(s)	101, 260, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.