Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005474

Physical Location & Seq

Genomic Coordinates Forward (+)

808640 .. 810621

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAAGGCCAAAGCAGTTACGCTCCACCTGCTTACATTCCGTTGGGAATGTCAGATTCTGATTCAGCGATTGTTTTGCGAAATGAAGACCCGCCCAATCAGCAGAACAGCATTGATGGGCCCAAACAATGGTCTTCTGGAATCTGCGCATGCTGTGACGATATGCAGAGCTGTTGTGTAGGTCTATTTTGTCCATGCTTTCTGTTTGGAAAGAATGCAGAATTTCTGGGTTCTGGGACATTATTAGGATCATGCATGACTCATTTTATTTTGTGGGCACTTGTTAATACCGCCTGCTGCTTATTGACTGAGGGCCTGTTTTTGGGCATACCGGGATGCTTTGTTGCATGTTATGCTTGTGGCTACCGCAGTGCCCTAAGAACAAAGTATAATCTTCAGGAAGCACCATGTGGAGACTTCGTCACTCATTTTTTCTGCCATCTGTGTGCACTTTGTCAAGAGTACCGGGAGATCCGTGAAAAGTCTGATTCCGGCGCTCCTGACCTGAGTCTGGCTGTAGTTACAGCCCCACCAGTCCAGACAATGGAACCAGGTCTCCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

189

Amino Acids

20.32

Weight (kDa)

4.9

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935
fragaria_vesca	FvH4_5g33900
malus_domestica	MD12G1015500.v1.1 MD12G1015600.v1.1 MD14G1013500.v1.1
prunus_persica	Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1
pyrus_communis	pycom12g01290 pycom14g01150
rosa_chinensis	RchiOBHm_Chr3g0495251
rosa_laevigata	RLG00000022634
rosa_multiflora	Rmu_sc0002433.1_g000013
rosa_roxburghii	Rroxscaffold_6G00390650
rosa_rugosa	Rorug03G0271500
rosa_samantha	Rh3AG320100 Rh3BG355100 Rh3CG352100 Rh3DG354100
rosa_wichuraiana	Rw3G027960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc16I	TGCGCA	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	37
AccB7I	CCANNNNNTGG	2 cut(s)	129, 544
AciI	CCGC	3 cut(s)	92, 291, 367
AclWI	GGATC	2 cut(s)	256, 466
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	4 cut(s)	129, 322, 511, 544
AjnI	CCWGG	1 cut(s)	550
AloI	GAACNNNNNNTCC	1 cut(s)	540
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	408, 560
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	256, 466
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	7, 119, 313
ApaI	GGGCCC	1 cut(s)	123
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	297
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	149, 497
AspS9I	GGNCC	3 cut(s)	119, 120, 313
AsuC2I	CCSGG	2 cut(s)	333, 467
BaeGI	GKGCMC	4 cut(s)	123, 280, 376, 451
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	93, 126
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	110, 447
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	552
BcnI	CCSGG	2 cut(s)	333, 467
BcoDI	GTCTC	2 cut(s)	408, 560
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	333, 467, 552
BmgT120I	GGNCC	3 cut(s)	119, 120, 313
BmiI	GGNNCC	2 cut(s)	121, 549
BmrFI	CCNGG	3 cut(s)	333, 467, 552
BmsI	GCATC	1 cut(s)	326
BoxI	GACNNNNGTC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	93, 126
BpuMI	CCSGG	2 cut(s)	333, 467
BsaI	GGTCTC	1 cut(s)	560
BsaXI	ACNNNNNCTCC	3 cut(s)	405, 435, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 322, 511, 544
Bse1I	ACTGG	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	4 cut(s)	129, 322, 511, 544
BseMII	CTCAG	2 cut(s)	300, 497
BseNI	ACTGG	1 cut(s)	533
BseSI	GKGCMC	4 cut(s)	123, 280, 376, 451
BseXI	GCAGC	1 cut(s)	284
BshFI	GGCC	3 cut(s)	9, 121, 315
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	3 cut(s)	332, 466, 492
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	4 cut(s)	129, 322, 511, 544
BsmAI	GTCTC	2 cut(s)	408, 560
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	9, 121, 315
Bso31I	GGTCTC	1 cut(s)	560
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	123, 280, 376, 451
Bsp143I	GATC	2 cut(s)	248, 471
BspACI	CCGC	3 cut(s)	92, 291, 367
BspANI	GGCC	3 cut(s)	9, 121, 315
BspCNI	CTCAG	2 cut(s)	301, 498
BspLI	GGNNCC	2 cut(s)	121, 549
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	256, 466
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	533
BssMI	GATC	2 cut(s)	248, 471
Bst2UI	CCWGG	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	151, 295
BstDEI	CTNAG	3 cut(s)	309, 377, 506
BstF5I	GGATG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	2 cut(s)	149, 497
BstKTI	GATC	2 cut(s)	251, 474
BstMAI	GTCTC	2 cut(s)	408, 560
BstMBI	GATC	2 cut(s)	248, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 100, 353
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	2 cut(s)	153, 351
BstPAI	GACNNNNGTC	1 cut(s)	507
BstSCI	CCNGG	3 cut(s)	331, 465, 550
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	4 cut(s)	123, 280, 376, 451
BstV1I	GCAGC	1 cut(s)	284
BstV2I	GAAGAC	2 cut(s)	93, 126
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	9, 121, 315
BtsCI	GGATG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	151, 295
CaiI	CAGNNNCTG	1 cut(s)	59
CfoI	GCGC	2 cut(s)	149, 497
Cfr13I	GGNCC	3 cut(s)	119, 120, 313
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	6 cut(s)	150, 195, 252, 256, 348, 408
CviJI	RGCY	7 cut(s)	9, 121, 171, 315, 363, 515, 527
CviKI_1	RGCY	7 cut(s)	9, 121, 171, 315, 363, 515, 527
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	309, 377, 506
DpnI	GATC	2 cut(s)	250, 473
DpnII	GATC	2 cut(s)	248, 471
DraIII	CACNNNGTG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	6 cut(s)	153, 198, 255, 259, 351, 411
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	6 cut(s)	149, 194, 251, 255, 347, 407
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	298
FspI	TGCGCA	1 cut(s)	148
GlaI	GCGC	2 cut(s)	148, 496
GluI	GCNGC	1 cut(s)	298
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	9, 121, 315
HapII	CCGG	3 cut(s)	332, 466, 492
HhaI	GCGC	2 cut(s)	149, 497
Hin1II	CATG	6 cut(s)	153, 198, 255, 259, 351, 411
Hin6I	GCGC	2 cut(s)	147, 495
HinP1I	GCGC	2 cut(s)	147, 495
HinfI	GANTC	6 cut(s)	56, 62, 141, 259, 488, 508
HpaII	CCGG	3 cut(s)	332, 466, 492
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	3 cut(s)	55, 61, 487
Hpy188III	TCNNGA	5 cut(s)	138, 398, 458, 500, 538
Hpy8I	GTNNAC	1 cut(s)	449
HpyCH4V	TGCA	5 cut(s)	166, 218, 255, 347, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 100, 353
HpyF3I	CTNAG	3 cut(s)	309, 377, 506
Hsp92II	CATG	6 cut(s)	153, 198, 255, 259, 351, 411
HspAI	GCGC	2 cut(s)	147, 495
Kzo9I	GATC	2 cut(s)	248, 471
LmnI	GCTCC	2 cut(s)	28, 502
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	326
MabI	ACCWGGT	1 cut(s)	550
MaeIII	GTNAC	4 cut(s)	17, 155, 421, 520
MalI	GATC	2 cut(s)	250, 473
MboI	GATC	2 cut(s)	248, 471
MboII	GAAGA	3 cut(s)	98, 126, 386
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	4 cut(s)	123, 280, 376, 451
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	253, 517
MnlI	CCTC	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	3 cut(s)	332, 466, 492
MspR9I	CCNGG	3 cut(s)	333, 467, 552
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	29, 100, 353
NciI	CCSGG	2 cut(s)	333, 467
NdeII	GATC	2 cut(s)	248, 471
NlaIII	CATG	6 cut(s)	153, 198, 255, 259, 351, 411
NlaIV	GGNNCC	2 cut(s)	121, 549
NmuCI	GTSAC	2 cut(s)	155, 421
NsbI	TGCGCA	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	2 cut(s)	153, 351
PaeI	GCATGC	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	56, 62, 141, 488
PflFI	GACNNNGTC	1 cut(s)	419
PflMI	CCANNNNNTGG	2 cut(s)	129, 544
PkrI	GCNGC	1 cut(s)	299
PleI	GAGTC	2 cut(s)	253, 516
PpsI	GAGTC	2 cut(s)	253, 516
PshAI	GACNNNNGTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	121, 549
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	3 cut(s)	119, 120, 313
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	471
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	248, 471
Sau96I	GGNCC	3 cut(s)	119, 120, 313
SchI	GAGTC	2 cut(s)	253, 517
ScrFI	CCNGG	3 cut(s)	333, 467, 552
SduI	GDGCHC	4 cut(s)	123, 280, 376, 451
SetI	ASST	5 cut(s)	31, 173, 184, 507, 556
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	444
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	92, 291, 367
StyD4I	CCNGG	3 cut(s)	331, 465, 550
TasI	AATT	1 cut(s)	221
TfiI	GAWTC	4 cut(s)	56, 62, 141, 488
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	155, 421
TseI	GCWGC	1 cut(s)	297
Tsp45I	GTSAC	2 cut(s)	155, 421
TspDTI	ATGAA	2 cut(s)	17, 99
TspGWI	ACGGA	2 cut(s)	30, 464
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	419
Van91I	CCANNNNNTGG	2 cut(s)	129, 544
VneI	GTGCAC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	2 cut(s)	153, 351
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.