Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005474

Physical Location & Seq

Genomic Coordinates Reverse (-)

3953976 .. 3957703

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G024900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGAGCCAAAGCAGTTATGCCCCACCGGCGTACATTCCTTTAGGGATGTCGGATTCTGAATCGGCAATTGTTTTGCGAAATGAAGAGCCTCCCAAGCAGCAAAACAGTGTTGATGGGCCTGTACAATGGTCTTCTGGAATCTGCGCATGCTGTGACGATATGCAGAGCTGTTGTGTAGGTCTATTTTGTCCTTGCTTTTTATTTGGAAAGAATGCAGAATTTCTGGGTTCTGGGACATTCATAGGATCATGCATGATGCATTTTATTTTGTGGGCACTCGTTAATACCGTCTGCTGCTTATTGACTGAGGGTCTTGTTTTGGGAGTACCGGGATGCTTTGTTGCATGTTATGCTTGTGGCTACCGCAGGACCCTAAGATCAAAGTATAATCTTCAGGAAGCACCATGTGGAGACTTTGTCACTCATTTTTTCTGCCATTTGTGTGCCATTTGTCAAGAGTACAGGGAGATCCGAGAAAAATCTGCTGATTCTGGCTTTCCTGACCTGAGTCTGGCCGTAGTTACAGCCCCACCAGTCCAGACAATGGAACCGGGTCTTGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

190

Amino Acids

20.62

Weight (kDa)

4.8

Isoelectric Point (pI)

70.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935 AT2G40935
fragaria_vesca	FvH4_5g33900
malus_domestica	MD12G1015500.v1.1 MD12G1015600.v1.1 MD14G1013500.v1.1
prunus_persica	Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1 Prupe.7G024900_v2.0.a1
pyrus_communis	pycom12g01290 pycom14g01150
rosa_chinensis	RchiOBHm_Chr3g0495251
rosa_laevigata	RLG00000022634
rosa_multiflora	Rmu_sc0002433.1_g000013
rosa_roxburghii	Rroxscaffold_6G00390650
rosa_rugosa	Rorug03G0271500
rosa_samantha	Rh3AG320100 Rh3BG355100 Rh3CG352100 Rh3DG354100
rosa_wichuraiana	Rw3G027960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	2 cut(s)	256, 466
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	4 cut(s)	35, 126, 330, 464
AfiI	CCNNNNNNNGG	2 cut(s)	514, 547
AgsI	TTSAA	1 cut(s)	563
AhdI	GACNNNNNGTC	1 cut(s)	312
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	256, 466
AoxI	GGCC	2 cut(s)	119, 516
ApeKI	GCWGC	2 cut(s)	100, 297
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	119, 372
AsuC2I	CCSGG	2 cut(s)	333, 555
AvaII	GGWCC	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	112, 284
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	333, 555
BcoDI	GTCTC	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	101, 298
BlsI	GCNGC	2 cut(s)	102, 299
Bme1390I	CCNGG	2 cut(s)	333, 555
Bme18I	GGWCC	1 cut(s)	372
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	119, 372
BmiI	GGNNCC	2 cut(s)	374, 552
BmrFI	CCNGG	2 cut(s)	333, 555
BmsI	GCATC	2 cut(s)	249, 326
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	333, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 547
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	536
BseGI	GGATG	2 cut(s)	54, 341
BseLI	CCNNNNNNNGG	2 cut(s)	514, 547
BseMII	CTCAG	2 cut(s)	300, 500
BseNI	ACTGG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	112, 284
BshFI	GGCC	2 cut(s)	121, 518
BsiSI	CCGG	3 cut(s)	29, 332, 554
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	514, 547
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	121, 518
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	248, 380, 471
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	2 cut(s)	121, 518
BspCNI	CTCAG	2 cut(s)	301, 501
BspLI	GGNNCC	2 cut(s)	374, 552
BspPI	GGATC	2 cut(s)	256, 466
BspQI	GCTCTTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	3 cut(s)	248, 380, 471
Bst4CI	ACNGT	2 cut(s)	110, 292
Bst6I	CTCTTC	2 cut(s)	81, 558
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	309, 377, 509
BstF5I	GGATG	2 cut(s)	54, 341
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	251, 383, 474
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	3 cut(s)	248, 380, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 97, 353
BstNSI	RCATGY	2 cut(s)	153, 351
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	331, 553
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	112, 284
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	121, 518
BtsCI	GGATG	2 cut(s)	54, 341
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	119, 372
Csp6I	GTAC	4 cut(s)	34, 125, 329, 463
CviAII	CATG	5 cut(s)	150, 252, 256, 348, 408
CviJI	RGCY	8 cut(s)	9, 91, 121, 171, 363, 498, 518, 530
CviKI_1	RGCY	8 cut(s)	9, 91, 121, 171, 363, 498, 518, 530
CviQI	GTAC	4 cut(s)	34, 125, 329, 463
DdeI	CTNAG	3 cut(s)	309, 377, 509
DpnI	GATC	3 cut(s)	250, 382, 473
DpnII	GATC	3 cut(s)	248, 380, 471
DraIII	CACNNNGTG	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	81, 558
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EarI	CTCTTC	2 cut(s)	81, 558
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	372
EcoT22I	ATGCAT	2 cut(s)	257, 264
FaeI	CATG	5 cut(s)	153, 255, 259, 351, 411
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	5 cut(s)	149, 251, 255, 347, 407
Fnu4HI	GCNGC	2 cut(s)	101, 298
FokI	GGATG	2 cut(s)	61, 348
Fsp4HI	GCNGC	2 cut(s)	101, 298
FspI	TGCGCA	1 cut(s)	148
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	101, 298
HaeIII	GGCC	2 cut(s)	121, 518
HapII	CCGG	3 cut(s)	29, 332, 554
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	153, 255, 259, 351, 411
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	5 cut(s)	56, 62, 141, 491, 511
HpaII	CCGG	3 cut(s)	29, 332, 554
Hpy188I	TCNGA	3 cut(s)	55, 61, 476
Hpy188III	TCNNGA	6 cut(s)	138, 398, 458, 503, 541, 560
HpyCH4III	ACNGT	2 cut(s)	110, 292
HpyCH4V	TGCA	5 cut(s)	166, 218, 255, 262, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 97, 353
HpyF3I	CTNAG	3 cut(s)	309, 377, 509
Hsp92II	CATG	5 cut(s)	153, 255, 259, 351, 411
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	248, 380, 471
LguI	GCTCTTC	1 cut(s)	81
Lsp1109I	GCAGC	2 cut(s)	112, 284
LweI	GCATC	2 cut(s)	249, 326
MaeIII	GTNAC	3 cut(s)	155, 421, 523
MalI	GATC	3 cut(s)	250, 382, 473
MboI	GATC	3 cut(s)	248, 380, 471
MboII	GAAGA	4 cut(s)	16, 98, 126, 386
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	2 cut(s)	69, 221
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	102, 304
Mph1103I	ATGCAT	2 cut(s)	257, 264
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	3 cut(s)	29, 332, 554
MspR9I	CCNGG	2 cut(s)	333, 555
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	3 cut(s)	29, 97, 353
NciI	CCSGG	2 cut(s)	333, 555
NdeII	GATC	3 cut(s)	248, 380, 471
NlaIII	CATG	5 cut(s)	153, 255, 259, 351, 411
NlaIV	GGNNCC	2 cut(s)	374, 552
NmuCI	GTSAC	2 cut(s)	155, 421
NsbI	TGCGCA	1 cut(s)	148
NsiI	ATGCAT	2 cut(s)	257, 264
NspI	RCATGY	2 cut(s)	153, 351
PaeI	GCATGC	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	56, 62, 141, 491
PflFI	GACNNNGTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	102, 299
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PpuMI	RGGWCCY	1 cut(s)	372
PshAI	GACNNNNGTC	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	374, 552
PspPI	GGNCC	2 cut(s)	119, 372
PspPPI	RGGWCCY	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	471
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	4 cut(s)	35, 126, 330, 464
RsaNI	GTAC	4 cut(s)	34, 125, 329, 463
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	101, 298
Sau3AI	GATC	3 cut(s)	248, 380, 471
Sau96I	GGNCC	2 cut(s)	119, 372
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	333, 555
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	3 cut(s)	173, 184, 510
SfaNI	GCATC	2 cut(s)	249, 326
SgrAI	CRCCGGYG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	444
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	2 cut(s)	69, 221
SsiI	CCGC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	331, 553
TaaI	ACNGT	2 cut(s)	110, 292
TasI	AATT	2 cut(s)	69, 221
TatI	WGTACW	2 cut(s)	124, 462
TfiI	GAWTC	4 cut(s)	56, 62, 141, 491
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	155, 421
TseI	GCWGC	2 cut(s)	100, 297
Tsp45I	GTSAC	2 cut(s)	155, 421
TspDTI	ATGAA	3 cut(s)	17, 99, 232
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	2 cut(s)	153, 351
Zsp2I	ATGCAT	2 cut(s)	257, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.