Rh3AG320100

Protein PLANT CADMIUM RESISTANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005474
Physical Location & Seq
Reverse (-)
44361740 .. 44365604
3865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG320100.1

Sequence Viewer

Length: 792 bp
ATGTTCAAAGCATTTAAGAAATGGCACGTGGATGTTACGTCTGCCCACTCCAAAAATATACTCGGGCCACGGAAGAGACCGGCCCAGAAAGTAAATCTAACAGGGACTCGGGACTGGCTCGTCTCTCGTCATTTTTCACTTTCTAACCACACAGACAAAAACGGAGAGGAAATTGTTGGTTTCTCCACCGACACAGACGGATCATTTGTTCGTCGCAGAAAGATGAAGAGCCAAAGCAGTTATGCACCTCCGTCTTATATTCCCTTGGGCCAATCAGATTCGGGATCACCTGTTGTTTTACGCAATGAAGACCCTCCCAAGCAGCAAAATAATGTCGATGGGCCGATACAATGGTCTTCTGGAATTTGCGCATGTTGTGATGATACGCAGAGCTGTTGTATAGGTTTATTTTGTCCTTGCTATCTGTTCGGAAAGAATGCAGAGTTTCTGGGCTCTGGGACATTAATGGGCTCCTGCACGACTCATTTTATTCTGTGGGTACTTGTTAATACCGTCTGCTGCTTATTAACTGATGGCCTTATTTTGGGTATACCGGGATGCTTTGTTGCATGTTATGCTTGTGGCTACCGCAGGGCACTAAGATCAAAATATAATCTCCAGGAAGCACCGTGTGGAGACTTTATTACTCATTTTTTCTGCCATCTGTGCGCAATTTGTCAAGAGTACAGGGAGATCCGTGAAAAGTCTGCTGAATCTGGCCCTGGTGATCTGAATCTAGCCATAGTTACAGCCCCAGCAGTCCAGACAATGGAACCAGGGCTTGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

263

Amino Acids

28.98

Weight (kDa)

8.09

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 118 - 231 2.3e-28 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
Acc16I TGCGCA 2 cut(s) 370, 670
AccB7I CCANNNNNTGG 1 cut(s) 769
AccI GTMKAC 1 cut(s) 550
AciI CCGC 1 cut(s) 589
AclWI GGATC 3 cut(s) 208, 292, 688
AcsI RAATTY 1 cut(s) 363
AcvI CACGTG 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 2 cut(s) 501, 686
AfiI CCNNNNNNNGG 2 cut(s) 544, 769
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 3 cut(s) 618, 721, 775
AloI GAACNNNNNNTCC 2 cut(s) 192, 224
AluBI AGCT 1 cut(s) 393
AluI AGCT 1 cut(s) 393
Alw26I GTCTC 3 cut(s) 70, 127, 630
AlwI GGATC 3 cut(s) 208, 292, 688
Ama87I CYCGRG 2 cut(s) 62, 108
AoxI GGCC 6 cut(s) 65, 81, 268, 341, 535, 718
ApeKI GCWGC 2 cut(s) 322, 519
ApoI RAATTY 1 cut(s) 363
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AseI ATTAAT 1 cut(s) 464
AspLEI GCGC 2 cut(s) 371, 671
AspS9I GGNCC 5 cut(s) 65, 82, 268, 341, 719
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 279, 737
AvaI CYCGRG 2 cut(s) 62, 108
BaeGI GKGCMC 1 cut(s) 598
BaeI ACNNNNGTAYC 2 cut(s) 338, 371
BanII GRGCYC 2 cut(s) 455, 473
BbrPI CACGTG 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 315, 348
BbvI GCAGC 2 cut(s) 334, 506
BccI CCATC 3 cut(s) 332, 527, 669
BciT130I CCWGG 3 cut(s) 620, 723, 777
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 70, 127, 630
BfaI CTAG 1 cut(s) 737
BisI GCNGC 2 cut(s) 323, 520
BlsI GCNGC 2 cut(s) 324, 521
Bme1390I CCNGG 4 cut(s) 555, 620, 723, 777
BmeT110I CYCGRG 2 cut(s) 62, 108
BmgT120I GGNCC 5 cut(s) 65, 82, 268, 341, 719
BmiI GGNNCC 2 cut(s) 472, 774
BmrFI CCNGG 4 cut(s) 555, 620, 723, 777
BmsI GCATC 1 cut(s) 548
BpiI GAAGAC 2 cut(s) 315, 348
BpmI CTGGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 68, 264, 721, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 769
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 3 cut(s) 620, 723, 777
BseDI CCNNGG 4 cut(s) 68, 264, 721, 776
BseGI GGATG 2 cut(s) 37, 563
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 544, 769
BseMI GCAATG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 2 cut(s) 334, 506
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 460
BshFI GGCC 6 cut(s) 67, 83, 270, 343, 537, 720
BsiHKCI CYCGRG 2 cut(s) 62, 108
BsiSI CCGG 2 cut(s) 80, 554
BslFI GGGAC 3 cut(s) 118, 125, 472
BslI CCNNNNNNNGG 2 cut(s) 544, 769
BsmAI GTCTC 3 cut(s) 70, 127, 630
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 3 cut(s) 118, 125, 472
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 6 cut(s) 67, 83, 270, 343, 537, 720
Bso31I GGTCTC 1 cut(s) 70
BsoBI CYCGRG 2 cut(s) 62, 108
Bsp1286I GDGCHC 3 cut(s) 455, 473, 598
Bsp143I GATC 5 cut(s) 200, 284, 602, 693, 727
BspACI CCGC 1 cut(s) 589
BspANI GGCC 6 cut(s) 67, 83, 270, 343, 537, 720
BspLI GGNNCC 2 cut(s) 472, 774
BspPI GGATC 3 cut(s) 208, 292, 688
BspQI GCTCTTC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 68, 264, 721, 776
BssMI GATC 5 cut(s) 200, 284, 602, 693, 727
BssNAI GTATAC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 264
Bst1107I GTATAC 1 cut(s) 551
Bst2UI CCWGG 3 cut(s) 620, 723, 777
Bst4CI ACNGT 2 cut(s) 514, 630
Bst6I CTCTTC 2 cut(s) 68, 221
BstAPI GCANNNNNTGC 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 599
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 37, 563
BstHHI GCGC 2 cut(s) 371, 671
BstKTI GATC 5 cut(s) 203, 287, 605, 696, 730
BstMAI GTCTC 3 cut(s) 70, 127, 630
BstMBI GATC 5 cut(s) 200, 284, 602, 693, 727
BstMWI GCNNNNNNNGC 2 cut(s) 575, 666
BstNI CCWGG 3 cut(s) 620, 723, 777
BstNSI RCATGY 2 cut(s) 375, 573
BstSCI CCNGG 4 cut(s) 553, 618, 721, 775
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 334, 506
BstV2I GAAGAC 2 cut(s) 315, 348
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
BstZ17I GTATAC 1 cut(s) 551
BsuRI GGCC 6 cut(s) 67, 83, 270, 343, 537, 720
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 37, 563
CfoI GCGC 2 cut(s) 371, 671
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 5 cut(s) 65, 82, 268, 341, 719
Csp6I GTAC 2 cut(s) 500, 685
CviAII CATG 2 cut(s) 372, 570
CviQI GTAC 2 cut(s) 500, 685
DdeI CTNAG 1 cut(s) 599
DpnI GATC 5 cut(s) 202, 286, 604, 695, 729
DpnII GATC 5 cut(s) 200, 284, 602, 693, 727
DraIII CACNNNGTG 1 cut(s) 632
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 68, 221
EarI CTCTTC 2 cut(s) 68, 221
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 2 cut(s) 455, 473
Eco31I GGTCTC 1 cut(s) 70
Eco72I CACGTG 1 cut(s) 28
Eco88I CYCGRG 2 cut(s) 62, 108
EcoRII CCWGG 3 cut(s) 618, 721, 775
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 2 cut(s) 455, 473
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 2 cut(s) 375, 573
FaqI GGGAC 3 cut(s) 118, 125, 472
FatI CATG 2 cut(s) 371, 569
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 323, 520
FokI GGATG 2 cut(s) 44, 570
FriOI GRGCYC 2 cut(s) 455, 473
Fsp4HI GCNGC 2 cut(s) 323, 520
FspBI CTAG 1 cut(s) 737
FspI TGCGCA 2 cut(s) 370, 670
GlaI GCGC 2 cut(s) 370, 670
GluI GCNGC 2 cut(s) 323, 520
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 6 cut(s) 67, 83, 270, 343, 537, 720
HapII CCGG 2 cut(s) 80, 554
HhaI GCGC 2 cut(s) 371, 671
Hin1II CATG 2 cut(s) 375, 573
Hin6I GCGC 2 cut(s) 369, 669
HinP1I GCGC 2 cut(s) 369, 669
HinfI GANTC 5 cut(s) 106, 278, 481, 713, 733
HpaII CCGG 2 cut(s) 80, 554
HphI GGTGA 2 cut(s) 279, 737
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 3 cut(s) 277, 431, 732
Hpy188III TCNNGA 5 cut(s) 110, 282, 360, 680, 763
Hpy8I GTNNAC 1 cut(s) 551
Hpy99I CGWCG 1 cut(s) 216
HpyCH4III ACNGT 2 cut(s) 514, 630
HpyCH4IV ACGT 2 cut(s) 27, 38
HpyCH4V TGCA 4 cut(s) 245, 440, 477, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 666
HpyF3I CTNAG 1 cut(s) 599
HpySE526I ACGT 2 cut(s) 27, 38
Hsp92II CATG 2 cut(s) 375, 573
HspAI GCGC 2 cut(s) 369, 669
Kzo9I GATC 5 cut(s) 200, 284, 602, 693, 727
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 2 cut(s) 334, 506
LweI GCATC 1 cut(s) 548
MaeI CTAG 1 cut(s) 737
MaeII ACGT 2 cut(s) 27, 38
MaeIII GTNAC 2 cut(s) 34, 745
MalI GATC 5 cut(s) 202, 286, 604, 695, 729
MboI GATC 5 cut(s) 200, 284, 602, 693, 727
MboII GAAGA 4 cut(s) 85, 238, 320, 348
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 3 cut(s) 455, 473, 598
MluCI AATT 3 cut(s) 171, 363, 672
MlyI GAGTC 2 cut(s) 100, 475
MnlI CCTC 3 cut(s) 160, 258, 324
MseI TTAA 4 cut(s) 15, 464, 507, 527
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 2 cut(s) 80, 554
MspR9I CCNGG 4 cut(s) 555, 620, 723, 777
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 3 cut(s) 620, 723, 777
MwoI GCNNNNNNNGC 2 cut(s) 575, 666
NciI CCSGG 1 cut(s) 555
NdeII GATC 5 cut(s) 200, 284, 602, 693, 727
NlaIII CATG 2 cut(s) 375, 573
NlaIV GGNNCC 2 cut(s) 472, 774
NsbI TGCGCA 2 cut(s) 370, 670
NspI RCATGY 2 cut(s) 375, 573
PciSI GCTCTTC 1 cut(s) 221
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 278, 713, 733
PflMI CCANNNNNTGG 1 cut(s) 769
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 2 cut(s) 324, 521
PleI GAGTC 2 cut(s) 100, 475
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
PpsI GAGTC 2 cut(s) 100, 475
Ppu21I YACGTR 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 618, 721, 775
PspCI CACGTG 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 618, 721, 775
PspN4I GGNNCC 2 cut(s) 472, 774
PspPI GGNCC 5 cut(s) 65, 82, 268, 341, 719
PsuI RGATCY 1 cut(s) 693
RsaI GTAC 2 cut(s) 501, 686
RsaNI GTAC 2 cut(s) 500, 685
RseI CAYNNNNRTG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 4 cut(s) 15, 464, 507, 527
SatI GCNGC 2 cut(s) 323, 520
Sau3AI GATC 5 cut(s) 200, 284, 602, 693, 727
Sau96I GGNCC 5 cut(s) 65, 82, 268, 341, 719
SchI GAGTC 2 cut(s) 100, 475
ScrFI CCNGG 4 cut(s) 555, 620, 723, 777
SduI GDGCHC 3 cut(s) 455, 473, 598
SetI ASST 6 cut(s) 30, 41, 250, 292, 395, 406
SfaNI GCATC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 171, 363, 672
SsiI CCGC 1 cut(s) 589
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 4 cut(s) 553, 618, 721, 775
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 514, 630
TaiI ACGT 2 cut(s) 30, 41
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 171, 363, 672
TatI WGTACW 1 cut(s) 684
TfiI GAWTC 3 cut(s) 278, 713, 733
Tru1I TTAA 4 cut(s) 15, 464, 507, 527
Tru9I TTAA 4 cut(s) 15, 464, 507, 527
TseI GCWGC 2 cut(s) 322, 519
TspDTI ATGAA 2 cut(s) 239, 321
TspGWI ACGGA 5 cut(s) 85, 177, 213, 240, 686
Van91I CCANNNNNTGG 1 cut(s) 769
VspI ATTAAT 1 cut(s) 464
XapI RAATTY 1 cut(s) 363
XceI RCATGY 2 cut(s) 375, 573
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.