AT2G41490

Glycosyl transferase family 4

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
17301572 .. 17304211
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41490.1

Sequence Viewer

Length: 1296 bp
ATGGCAGCTCGTAAGAGAGCTTCATCGATCTCAATTCCCAACAAACCGGACCCGTCGGAACCCAACTCAGCGCCATCGGAGCAGAAGATGACCCGAAAGACGGTTTCTGCTTCCGGTGAGGAATTTCGTCTCGCGCCGCCGAAATTAGGAGTGATCTTCGTGATCTCTACTCTTCTCTGTTCGCTCTATCTATACCTTCTCTGTTTTCACTACAAGGTTGATAATGAGCTCAAGCGATCGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTTTTTCGTCACTCTCAAAATGATTCCTGTTACTGCCAGATACGTTCTGAGACGTAACATGTTTGGTTTTGATATCAACAAAAGAGGCACGCCTCAAGGAGATATTAAAGTGCCAGAGTCATTGGGTATTGTTGTTGGTATTGTCTTTTTGATCGTGGCGATAATATTTCAGTATTTTAACTTCACTGAAGATTCTAATTGGCTTGTGGAGTATAATGCAGCACTAGCATCTATTTGCTTCATGATTTTGCTTGGATTTGTAGATGATGTCCTTGATGTGCCTTGGAGAGTAAAGCTTGTCCTGCCATCTTTTGCTACCCTTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCAAAACCTCTTGTTGCTTATATTGGCTTGGAAGTGCTTAATCTAGGAAGGATATATAAGTTATATATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCTTGAAATCGGTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAATCGGAGCATCTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCAACCGCTGATGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTTTGTTGGAGACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCTGGGTCACTTCAGTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGTTCTGAACTTTCTATTATCGCTTCCTCAGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGGTATGATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAG

Protein Analysis

431

Amino Acids

47.72

Weight (kDa)

9.07

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 165 - 335 6.2e-27 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 134, 254, 1099
AciI CCGC 5 cut(s) 137, 254, 792, 887, 1097
AclI AACGTT 1 cut(s) 813
AclWI GGATC 2 cut(s) 833, 1115
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 3 cut(s) 480, 921, 994
AfaI GTAC 1 cut(s) 727
AfiI CCNNNNNNNGG 3 cut(s) 100, 146, 1130
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 1 cut(s) 767
AjnI CCWGG 1 cut(s) 1233
AleI CACNNNNGTG 1 cut(s) 1011
AluBI AGCT 7 cut(s) 8, 20, 229, 264, 568, 857, 1075
AluI AGCT 7 cut(s) 8, 20, 229, 264, 568, 857, 1075
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 5 cut(s) 134, 316, 945, 1112, 1212
AlwI GGATC 2 cut(s) 833, 1115
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 2 cut(s) 760, 894
ApeKI GCWGC 3 cut(s) 5, 491, 794
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 4 cut(s) 73, 136, 1101, 1250
AspS9I GGNCC 2 cut(s) 49, 1190
AsuHPI GGTGA 2 cut(s) 128, 842
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 2 cut(s) 49, 1190
BalI TGGCCA 1 cut(s) 896
BanII GRGCYC 1 cut(s) 231
BarI GAAGNNNNNNTAC 3 cut(s) 36, 437, 469
BbsI GAAGAC 1 cut(s) 958
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 1071
BbvI GCAGC 3 cut(s) 17, 503, 781
BccI CCATC 7 cut(s) 82, 586, 598, 886, 1110, 1148, 1227
BciT130I CCWGG 1 cut(s) 1235
BciVI GTATCC 1 cut(s) 939
BcoDI GTCTC 5 cut(s) 134, 316, 945, 1112, 1212
BfaI CTAG 3 cut(s) 497, 680, 1241
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 5 cut(s) 6, 137, 492, 792, 795
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 5 cut(s) 7, 138, 493, 793, 796
Bme1390I CCNGG 1 cut(s) 1235
Bme18I GGWCC 2 cut(s) 49, 1190
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 49, 1190
BmiI GGNNCC 2 cut(s) 51, 60
BmrFI CCNGG 1 cut(s) 1235
BmsI GCATC 3 cut(s) 509, 839, 1224
BoxI GACNNNNGTC 1 cut(s) 1163
BpiI GAAGAC 1 cut(s) 958
Bpu10I CCTNAGC 1 cut(s) 1071
Bpu1102I GCTNAGC 1 cut(s) 260
BpuEI CTTGAG 4 cut(s) 215, 351, 1026, 1198
Bsa29I ATCGAT 2 cut(s) 26, 239
BsaJI CCNNGG 3 cut(s) 554, 903, 1112
BsaWI WCCGGW 3 cut(s) 46, 113, 1130
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 146, 1130
Bse118I RCCGGY 1 cut(s) 1142
Bse3DI GCAATG 1 cut(s) 915
BseBI CCWGG 1 cut(s) 1235
BseCI ATCGAT 2 cut(s) 26, 239
BseDI CCNNGG 3 cut(s) 554, 903, 1112
BseGI GGATG 3 cut(s) 741, 899, 1215
BseLI CCNNNNNNNGG 3 cut(s) 100, 146, 1130
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 3 cut(s) 81, 311, 1085
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 3 cut(s) 17, 503, 781
BseYI CCCAGC 1 cut(s) 1079
Bsh1236I CGCG 3 cut(s) 134, 254, 1099
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 2 cut(s) 762, 896
BshVI ATCGAT 2 cut(s) 26, 239
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 5 cut(s) 47, 114, 972, 1131, 1143
BslFI GGGAC 1 cut(s) 1171
BslI CCNNNNNNNGG 3 cut(s) 100, 146, 1130
BsmAI GTCTC 5 cut(s) 134, 316, 945, 1112, 1212
BsmBI CGTCTC 3 cut(s) 134, 316, 1112
BsmFI GGGAC 1 cut(s) 1171
BsnI GGCC 2 cut(s) 762, 896
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 725
Bsp143I GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 5 cut(s) 137, 254, 792, 887, 1097
BspANI GGCC 2 cut(s) 762, 896
BspCNI CTCAG 3 cut(s) 80, 312, 1084
BspDI ATCGAT 2 cut(s) 26, 239
BspFNI CGCG 3 cut(s) 134, 254, 1099
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 51, 60
BspPI GGATC 2 cut(s) 833, 1115
BsrDI GCAATG 1 cut(s) 915
BsrFI RCCGGY 1 cut(s) 1142
BsrGI TGTACA 1 cut(s) 725
BssAI RCCGGY 1 cut(s) 1142
BssECI CCNNGG 3 cut(s) 554, 903, 1112
BssMI GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
BssT1I CCWWGG 3 cut(s) 554, 903, 1112
Bst2UI CCWGG 1 cut(s) 1235
Bst4CI ACNGT 3 cut(s) 103, 781, 964
Bst6I CTCTTC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 914
BstAUI TGTACA 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 362, 915, 1077, 1246
BstDEI CTNAG 4 cut(s) 67, 260, 320, 1071
BstF5I GGATG 3 cut(s) 741, 899, 1215
BstFNI CGCG 3 cut(s) 134, 254, 1099
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 4 cut(s) 73, 136, 1101, 1250
BstKTI GATC 7 cut(s) 30, 156, 165, 239, 426, 841, 1123
BstMAI GTCTC 5 cut(s) 134, 316, 945, 1112, 1212
BstMBI GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 6 cut(s) 79, 497, 574, 914, 1072, 1254
BstNI CCWGG 1 cut(s) 1235
BstNSI RCATGY 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 1163
BstSCI CCNGG 1 cut(s) 1233
BstUI CGCG 3 cut(s) 134, 254, 1099
BstV1I GCAGC 3 cut(s) 17, 503, 781
BstV2I GAAGAC 1 cut(s) 958
BstXI CCANNNNNNTGG 1 cut(s) 904
Bsu15I ATCGAT 2 cut(s) 26, 239
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 2 cut(s) 762, 896
BsuTUI ATCGAT 2 cut(s) 26, 239
BtsCI GGATG 3 cut(s) 741, 899, 1215
BtsIMutI CAGTG 2 cut(s) 456, 1018
Cac8I GCNNGC 4 cut(s) 362, 915, 1077, 1246
CciI TCATGA 1 cut(s) 513
CfoI GCGC 4 cut(s) 73, 136, 1101, 1250
Cfr10I RCCGGY 1 cut(s) 1142
Cfr13I GGNCC 2 cut(s) 49, 1190
ClaI ATCGAT 2 cut(s) 26, 239
Csp6I GTAC 1 cut(s) 726
CviAII CATG 3 cut(s) 331, 514, 860
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 4 cut(s) 67, 260, 320, 1071
DpnI GATC 7 cut(s) 29, 155, 164, 238, 425, 840, 1122
DpnII GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 554, 903, 1112
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 49, 1190
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 3 cut(s) 480, 921, 994
Eco88I CYCGRG 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 1233
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 554, 903, 1112
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 3 cut(s) 554, 903, 1112
Esp3I CGTCTC 3 cut(s) 134, 316, 1112
FaeI CATG 3 cut(s) 334, 517, 863
FaqI GGGAC 1 cut(s) 1171
FatI CATG 3 cut(s) 330, 513, 859
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 6, 137, 492, 792, 795
FokI GGATG 3 cut(s) 728, 886, 1202
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 6, 137, 492, 792, 795
FspBI CTAG 3 cut(s) 497, 680, 1241
GlaI GCGC 4 cut(s) 72, 135, 1100, 1249
GluI GCNGC 5 cut(s) 6, 137, 492, 792, 795
GsaI CCCAGC 1 cut(s) 1083
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 762, 896
HapII CCGG 5 cut(s) 47, 114, 972, 1131, 1143
HhaI GCGC 4 cut(s) 73, 136, 1101, 1250
Hin1II CATG 3 cut(s) 334, 517, 863
Hin6I GCGC 4 cut(s) 71, 134, 1099, 1248
HinP1I GCGC 4 cut(s) 71, 134, 1099, 1248
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 4 cut(s) 241, 295, 389, 464
HpaII CCGG 5 cut(s) 47, 114, 972, 1131, 1143
HphI GGTGA 2 cut(s) 128, 842
Hpy166II GTNNAC 1 cut(s) 1174
Hpy188I TCNGA 7 cut(s) 58, 79, 321, 756, 827, 1050, 1201
Hpy188III TCNNGA 5 cut(s) 160, 514, 802, 842, 868
Hpy8I GTNNAC 1 cut(s) 1174
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 6 cut(s) 206, 602, 678, 874, 942, 1261
HpyCH4III ACNGT 3 cut(s) 103, 781, 964
HpyCH4IV ACGT 3 cut(s) 315, 325, 813
HpyCH4V TGCA 3 cut(s) 491, 820, 1215
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 497, 574, 914, 1072, 1254
HpyF3I CTNAG 4 cut(s) 67, 260, 320, 1071
HpySE526I ACGT 3 cut(s) 315, 325, 813
Hsp92II CATG 3 cut(s) 334, 517, 863
HspAI GCGC 4 cut(s) 71, 134, 1099, 1248
Kzo9I GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
LmnI GCTCC 2 cut(s) 79, 827
Lsp1109I GCAGC 3 cut(s) 17, 503, 781
LweI GCATC 3 cut(s) 509, 839, 1224
MaeI CTAG 3 cut(s) 497, 680, 1241
MaeII ACGT 3 cut(s) 315, 325, 813
MaeIII GTNAC 4 cut(s) 280, 301, 326, 1004
MalI GATC 7 cut(s) 29, 155, 164, 238, 425, 840, 1122
MboI GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
MboII GAAGA 9 cut(s) 97, 148, 164, 473, 927, 958, 1021, 1028, 1214
MfeI CAATTG 1 cut(s) 922
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 6 cut(s) 33, 122, 143, 246, 469, 922
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 36, 928
MnlI CCTC 9 cut(s) 112, 350, 375, 654, 1031, 1034, 1050, 1080, 1173
Mox20I TGGCCA 1 cut(s) 896
MscI TGGCCA 1 cut(s) 896
MseI TTAA 5 cut(s) 249, 378, 450, 675, 738
MslI CAYNNNNRTG 1 cut(s) 1011
Msp20I TGGCCA 1 cut(s) 896
MspA1I CMGCKG 2 cut(s) 794, 889
MspI CCGG 5 cut(s) 47, 114, 972, 1131, 1143
MspR9I CCNGG 1 cut(s) 1235
MunI CAATTG 1 cut(s) 922
MvaI CCWGG 1 cut(s) 1235
MvnI CGCG 3 cut(s) 134, 254, 1099
MwoI GCNNNNNNNGC 6 cut(s) 79, 497, 574, 914, 1072, 1254
NdeII GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
NlaIII CATG 3 cut(s) 334, 517, 863
NlaIV GGNNCC 2 cut(s) 51, 60
NmuCI GTSAC 2 cut(s) 280, 1004
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 1011
PagI TCATGA 1 cut(s) 513
PciI ACATGT 1 cut(s) 330
PfeI GAWTC 3 cut(s) 241, 295, 464
PkrI GCNGC 5 cut(s) 7, 138, 493, 793, 796
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 330
PshAI GACNNNNGTC 1 cut(s) 1163
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 1233
PspFI CCCAGC 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1233
PspN4I GGNNCC 2 cut(s) 51, 60
PspPI GGNCC 2 cut(s) 49, 1190
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
RseI CAYNNNNRTG 1 cut(s) 1011
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 5 cut(s) 249, 378, 450, 675, 738
SatI GCNGC 5 cut(s) 6, 137, 492, 792, 795
Sau3AI GATC 7 cut(s) 27, 153, 162, 236, 423, 838, 1120
Sau96I GGNCC 2 cut(s) 49, 1190
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 1235
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 3 cut(s) 509, 839, 1224
SinI GGWCC 2 cut(s) 49, 1190
SmiMI CAYNNNNRTG 1 cut(s) 1011
SmlI CTYRAG 4 cut(s) 230, 366, 1041, 1177
SmoI CTYRAG 4 cut(s) 230, 366, 1041, 1177
Sse9I AATT 6 cut(s) 33, 122, 143, 246, 469, 922
SsiI CCGC 5 cut(s) 137, 254, 792, 887, 1097
SspI AATATT 1 cut(s) 438
SspMI CTAG 3 cut(s) 497, 680, 1241
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 1233
StyI CCWWGG 3 cut(s) 554, 903, 1112
TaaI ACNGT 3 cut(s) 103, 781, 964
TaiI ACGT 3 cut(s) 318, 328, 816
TaqI TCGA 4 cut(s) 26, 239, 869, 1267
TaqII GACCGA 1 cut(s) 761
TasI AATT 6 cut(s) 33, 122, 143, 246, 469, 922
TatI WGTACW 1 cut(s) 725
TauI GCSGC 2 cut(s) 139, 794
TfiI GAWTC 3 cut(s) 241, 295, 464
Tru1I TTAA 5 cut(s) 249, 378, 450, 675, 738
Tru9I TTAA 5 cut(s) 249, 378, 450, 675, 738
TscAI CASTG 2 cut(s) 463, 1018
TseFI GTSAC 2 cut(s) 280, 1004
TseI GCWGC 3 cut(s) 5, 491, 794
Tsp45I GTSAC 2 cut(s) 280, 1004
TspDTI ATGAA 3 cut(s) 12, 502, 1249
TspRI CASTG 2 cut(s) 463, 1018
VpaK11BI GGWCC 2 cut(s) 49, 1190
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 334
XspI CTAG 3 cut(s) 497, 680, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.