Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005009

Physical Location & Seq

Genomic Coordinates Reverse (-)

29998570 .. 30006903

Gene Structure 8334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCAGCTCGGAAGCGAGCTTCAACAAACTCGTCCTCCTCGACTCAAACCAAACCAAGCGATCGCGAGCCACCCAAAACCCAAGAAGCAGCAGCAGAAGCGCCAATCTCAGCACCCAAGTCTGGTGTGATTCTGAAGCTGACGGCGTTGTTCTCCGTCCCCTACTTTTACCTGGTCTTGTACCATTACAAGATTGAGCAGGAGCTCAGAAATTCGATTCTGATCAATGCCGCCCTCAGCCTCGCGGCGTTCTTCGTCACCGTTAAGATGATCCCTGTGGCTTCTAGATACGTTCTCAGGCGCAATCTGTTTGGCTACGATATTAACAAAAAGGGTACTCCCCAGGGTACTATTAAAGTGCCAGAGTCGTTGGGCATTGTTGTTGGAATTGTCTTCTTGGTCTTTTCGATATTATTTCAGTATTTCAACTTCACTGCAGATTCAAATTGGCTTGTTGAGTACAATGCAGCATTAGCCTCCATATGCTTTATGGTATTGCTGGGATTTGTAGATGATGTTCTTGATGTACCGTGGAGAGTGAAATTAATACTGCCATCAATTGCAGCTTTACCTCTGCTGATGGCTTATGCTGGACATACAACTATTATCATACCGAAGCCTCTTGTTCCATATGTTGGGCTAGAGGTCTGGGATCTAGGATGGATGTATAAACTATATATGGGACTTTTGGCGGTTTTCTGTACAAACTCAATTAATATTCATGCTGGATTGAATGGTCTTGAAGTTGGCCAGACAGTTGTAATTGCATCTGCTATTTTAATACACAATATCATGCAAATTGGAGCATCTGTAGATTTTGAGTACAAGATGGCACATGCATTCTCTATATATCTTGCCCAACCCTTACTGGCAACCTCCTTGGCATTGTTCTCTTACAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003975 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006489 GO:0006490 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016780 GO:0019538 GO:0019637 GO:0031224 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046465 GO:0070085 GO:0071704 GO:0090407 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glycos_transf_4

Protein Analysis

301

Amino Acids

33.27

Weight (kDa)

8.9

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_4	PF00953	157 - 301	3.7e-17	Glycosyl transferase family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41490 AT3G57220
fragaria_vesca	FvH4_6g24760 FvH4_6g24760 FvH4_6g24760 FvH4_6g24760 FvH4_6g24760
malus_domestica	MD12G1086200.v1.1 MD14G1080600.v1.1
prunus_persica	Prupe.1G032300_v2.0.a1 Prupe.7G050100_v2.0.a1
pyrus_communis	pycom12g07300 pycom14g06990
rosa_chinensis	RchiOBHm_Chr3g0484361 RchiOBHm_Chr3g0484421 RchiOBHm_Chr3g0484511
rosa_laevigata	RLG00000023230
rosa_multiflora	Rmu_sc0002910.1_g000009
rosa_roxburghii	Rroxscaffold_6G00397750
rosa_rugosa	Rorug03G0211000 Rorug03G0211100 Rorug03G0211200
rosa_samantha	Rh3AG260100 Rh3AG260600 Rh3AG261100 Rh3AG261800 Rh3BG296800 Rh3CG294300 Rh3DG290400
rosa_wichuraiana	Rw3G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccII	CGCG	2 cut(s)	66, 245
AciI	CCGC	3 cut(s)	231, 245, 692
AclWI	GGATC	2 cut(s)	265, 660
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	7 cut(s)	182, 337, 349, 461, 528, 703, 824
AfiI	CCNNNNNNNGG	2 cut(s)	122, 635
AgsI	TTSAA	5 cut(s)	24, 427, 444, 733, 743
AjnI	CCWGG	2 cut(s)	171, 342
AluBI	AGCT	5 cut(s)	8, 20, 139, 205, 566
AluI	AGCT	5 cut(s)	8, 20, 139, 205, 566
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	265, 660
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	5 cut(s)	5, 89, 92, 467, 563
ApoI	RAATTY	1 cut(s)	211
AseI	ATTAAT	2 cut(s)	545, 714
AsiSI	GCGATCGC	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	103, 303
AsuHPI	GGTGA	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	5 cut(s)	17, 101, 104, 479, 575
BccI	CCATC	4 cut(s)	562, 574, 654, 823
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	2 cut(s)	173, 344
BclI	TGATCA	1 cut(s)	222
BfaI	CTAG	3 cut(s)	285, 641, 656
BfmI	CTRYAG	2 cut(s)	435, 810
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	7 cut(s)	6, 90, 93, 231, 246, 468, 564
BlsI	GCNGC	7 cut(s)	7, 91, 94, 232, 247, 469, 565
Bme1390I	CCNGG	2 cut(s)	173, 344
BmrFI	CCNGG	2 cut(s)	173, 344
BmsI	GCATC	2 cut(s)	776, 815
BpiI	GAAGAC	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	342, 343, 530, 879
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 635
Bse1I	ACTGG	2 cut(s)	873, 905
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	173, 344
BseDI	CCNNGG	4 cut(s)	342, 343, 530, 879
BseGI	GGATG	2 cut(s)	665, 669
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	122, 635
BseMII	CTCAG	4 cut(s)	123, 220, 250, 310
BseNI	ACTGG	2 cut(s)	873, 905
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	5 cut(s)	17, 101, 104, 479, 575
BseYI	CCCAGC	1 cut(s)	499
Bsh1236I	CGCG	2 cut(s)	66, 245
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	750
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	143, 696
BslI	CCNNNNNNNGG	2 cut(s)	122, 635
BsmFI	GGGAC	2 cut(s)	143, 696
BsmI	GAATGC	1 cut(s)	839
BsnI	GGCC	1 cut(s)	750
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	701
Bsp143I	GATC	4 cut(s)	61, 222, 270, 652
Bsp68I	TCGCGA	1 cut(s)	66
BspACI	CCGC	3 cut(s)	231, 245, 692
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	4 cut(s)	122, 219, 249, 309
BspFNI	CGCG	2 cut(s)	66, 245
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	2 cut(s)	265, 660
BsrGI	TGTACA	1 cut(s)	701
BsrI	ACTGG	2 cut(s)	873, 905
BssECI	CCNNGG	4 cut(s)	342, 343, 530, 879
BssMI	GATC	4 cut(s)	61, 222, 270, 652
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	2 cut(s)	173, 344
Bst4CI	ACNGT	3 cut(s)	262, 531, 757
BstAUI	TGTACA	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	18, 68
BstDEI	CTNAG	4 cut(s)	109, 206, 236, 296
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	2 cut(s)	665, 669
BstFNI	CGCG	2 cut(s)	66, 245
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 303
BstKTI	GATC	4 cut(s)	64, 225, 273, 655
BstMBI	GATC	4 cut(s)	61, 222, 270, 652
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 473
BstNI	CCWGG	2 cut(s)	173, 344
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	171, 342
BstSFI	CTRYAG	2 cut(s)	435, 810
BstUI	CGCG	2 cut(s)	66, 245
BstV1I	GCAGC	5 cut(s)	17, 101, 104, 479, 575
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	750
BtgI	CCRYGG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	665, 669
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	432
BtuMI	TCGCGA	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	18, 68
CfoI	GCGC	2 cut(s)	103, 303
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	7 cut(s)	181, 336, 348, 460, 527, 702, 823
CviAII	CATG	3 cut(s)	722, 793, 836
CviQI	GTAC	7 cut(s)	181, 336, 348, 460, 527, 702, 823
DdeI	CTNAG	4 cut(s)	109, 206, 236, 296
DpnI	GATC	4 cut(s)	63, 224, 272, 654
DpnII	GATC	4 cut(s)	61, 222, 270, 652
EaeI	YGGCCR	1 cut(s)	748
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	879
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	171, 342
EcoT14I	CCWWGG	1 cut(s)	879
EcoT22I	ATGCAT	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	3 cut(s)	725, 796, 839
FaqI	GGGAC	2 cut(s)	143, 696
FatI	CATG	3 cut(s)	721, 792, 835
FauNDI	CATATG	2 cut(s)	482, 631
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	7 cut(s)	6, 90, 93, 231, 246, 468, 564
FokI	GGATG	2 cut(s)	672, 676
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	7 cut(s)	6, 90, 93, 231, 246, 468, 564
FspBI	CTAG	3 cut(s)	285, 641, 656
GlaI	GCGC	2 cut(s)	102, 302
GluI	GCNGC	7 cut(s)	6, 90, 93, 231, 246, 468, 564
GsaI	CCCAGC	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	750
HhaI	GCGC	2 cut(s)	103, 303
Hin1II	CATG	3 cut(s)	725, 796, 839
Hin6I	GCGC	2 cut(s)	101, 301
HinP1I	GCGC	2 cut(s)	101, 301
HinfI	GANTC	5 cut(s)	43, 130, 217, 365, 440
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	12, 135, 209, 222
Hpy188III	TCNNGA	4 cut(s)	65, 285, 521, 740
HpyCH4III	ACNGT	3 cut(s)	262, 531, 757
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	6 cut(s)	437, 467, 563, 767, 796, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 473
HpyF3I	CTNAG	4 cut(s)	109, 206, 236, 296
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	725, 796, 839
HspAI	GCGC	2 cut(s)	101, 301
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	61, 222, 270, 652
LmnI	GCTCC	2 cut(s)	202, 803
Lsp1109I	GCAGC	5 cut(s)	17, 101, 104, 479, 575
LweI	GCATC	2 cut(s)	776, 815
MabI	ACCWGGT	1 cut(s)	171
MaeI	CTAG	3 cut(s)	285, 641, 656
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	63, 224, 272, 654
MboI	GATC	4 cut(s)	61, 222, 270, 652
MboII	GAAGA	2 cut(s)	244, 385
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	207
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	8 cut(s)	211, 387, 445, 542, 558, 711, 762, 798
MluNI	TGGCCA	1 cut(s)	750
MlyI	GAGTC	2 cut(s)	37, 374
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	9 cut(s)	46, 49, 245, 251, 487, 582, 630, 637, 886
Mox20I	TGGCCA	1 cut(s)	750
Mph1103I	ATGCAT	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	6 cut(s)	264, 324, 354, 545, 714, 779
Msp20I	TGGCCA	1 cut(s)	750
MspR9I	CCNGG	2 cut(s)	173, 344
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	2 cut(s)	173, 344
MvnI	CGCG	2 cut(s)	66, 245
MwoI	GCNNNNNNNGC	2 cut(s)	98, 473
NdeI	CATATG	2 cut(s)	482, 631
NdeII	GATC	4 cut(s)	61, 222, 270, 652
NlaIII	CATG	3 cut(s)	725, 796, 839
NmuCI	GTSAC	1 cut(s)	256
NruI	TCGCGA	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	1 cut(s)	839
PasI	CCCWGGG	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	839
PfeI	GAWTC	3 cut(s)	130, 217, 440
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	7 cut(s)	7, 91, 94, 232, 247, 469, 565
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	2 cut(s)	37, 373
PpsI	GAGTC	2 cut(s)	37, 373
PshBI	ATTAAT	2 cut(s)	545, 714
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	171, 342
PspFI	CCCAGC	1 cut(s)	499
PspGI	CCWGG	2 cut(s)	171, 342
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	652
PvuI	CGATCG	1 cut(s)	64
RgaI	GCGATCGC	1 cut(s)	64
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	7 cut(s)	182, 337, 349, 461, 528, 703, 824
RsaNI	GTAC	7 cut(s)	181, 336, 348, 460, 527, 702, 823
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	6 cut(s)	264, 324, 354, 545, 714, 779
SatI	GCNGC	7 cut(s)	6, 90, 93, 231, 246, 468, 564
Sau3AI	GATC	4 cut(s)	61, 222, 270, 652
SchI	GAGTC	2 cut(s)	37, 374
ScrFI	CCNGG	2 cut(s)	173, 344
SduI	GDGCHC	1 cut(s)	207
SexAI	ACCWGGT	1 cut(s)	171
SfaAI	GCGATCGC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	776, 815
SfcI	CTRYAG	2 cut(s)	435, 810
SgfI	GCGATCGC	1 cut(s)	64
Sse9I	AATT	8 cut(s)	211, 387, 445, 542, 558, 711, 762, 798
SsiI	CCGC	3 cut(s)	231, 245, 692
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	3 cut(s)	285, 641, 656
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	171, 342
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	3 cut(s)	262, 531, 757
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	41, 215, 407
TasI	AATT	8 cut(s)	211, 387, 445, 542, 558, 711, 762, 798
TatI	WGTACW	3 cut(s)	459, 701, 822
TauI	GCSGC	2 cut(s)	233, 248
TfiI	GAWTC	3 cut(s)	130, 217, 440
Tru1I	TTAA	6 cut(s)	264, 324, 354, 545, 714, 779
Tru9I	TTAA	6 cut(s)	264, 324, 354, 545, 714, 779
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	5 cut(s)	5, 89, 92, 467, 563
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	710
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	635
VspI	ATTAAT	2 cut(s)	545, 714
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	3 cut(s)	285, 641, 656
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.