FvH4_6g24760

UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
18759883 .. 18765816
5934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24760.t1

Sequence Viewer

Length: 1254 bp
ATGGCAGCTCGAAAGCGAGCTTCAACAAACTCGTCCTCGTCGACTCAAACCACCAAACCACCCAAAACCCAAGAAGCAGAGGCCCCAATTTCAGCACCCAAGTCAGGTCTAATCCTCAAGCTCGCCCTTTTCTTCTCAGTCCCATACTTTTACCTGGTGTTGTCCCATTACAAGATCGAGCCAGAGCTCCGCAACTCGATTCTGATCAATGCCGGCCTCAGCCTGGCGGCGTTCTTCGTCACCGTTAAAATGATCCCGGTGGCTTCCAGATACGTTCTCAGGCGCAATCTGTTTGGCTACGATATTAACAAAAAGGGCACTCCTCAGGGTACTCTCAAAGTGCCAGAGTCATTGGGCATTGTTGTTGGCGTTGTCTTCTTGGTCTTTTCAATATTATTTCAGTATTTCAACTTCACTGCAGATTCAAATTGGCTTGTTGAGTACAATGCAGCATTAGCCTCCATATGCTTTATGGTATTGCTGGGATTTGTAGATGATGTCCTTGATGTACCTTGGAGAGTGAAATTAATACTGCCATCAATTGCAGCTTTACCTCTGCTAATGGCTTATGCTGGACATACAACTATTATCATACCGAAGCCTCTTGTTCCATATGTTGGCCTAGAGGTCTGGGATCTAGGATGGATGTATAAACTATACATGGGACTTTTGGCGGTTTTCTGTACGAACTCAATTAATATTCATGCTGGATTGAATGGTCTTGAAGTTGGGCAGACAGTTGTAATTTCATATGCTATTTTAATACACAATATCATGCAAATTGGAGCATCTGCAGATTCTGAGTACAAGAAGGCACATGCATTCTCTATTTATCTTGCCCAACCCTTACTGGCGACCTCCTTGGCATTGTTCTCTTATAACTGGTATCCATCTTCAGCTTTTGTTGGAGATACTTACACATACTTTGCTGGGATGACTATGGCTGTGGTCGGGATTCTTGGCCATTTTAGTGAAACACTCCTGATTTTCTTTATCCCTCAAGTCTTGAACTTTCTCTTGTCACTACCCCAGCTTGCTGGGATCATTCCATGTCCACGGCATCGTCTCCCAAGGTTTGATCCCGACACTGGACTGCTGACTGGGACAAATGATGGGACGCTTGTAAACTTGTTCCTAAGACAATTTGGCAGGATGACAGAGAAGAGACTTTGTGTTTATCTTCTCGTTTTCCAGGCCCTAGCATGCGGCTTCTGTTTCCTGTTGAGATACTTTCTTGCTGGTTGGTATAAATGA

Protein Analysis

418

Amino Acids

46.35

Weight (kDa)

9.13

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 151 - 321 1.6e-27 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 1 cut(s) 41
AciI CCGC 4 cut(s) 190, 227, 674, 1206
AclWI GGATC 4 cut(s) 247, 642, 1049, 1073
AcoI YGGCCR 1 cut(s) 961
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 5 cut(s) 331, 443, 510, 685, 806
AfiI CCNNNNNNNGG 4 cut(s) 104, 223, 617, 1088
AgsI TTSAA 7 cut(s) 24, 390, 409, 426, 715, 725, 1009
AjnI CCWGG 3 cut(s) 153, 222, 1191
AluBI AGCT 7 cut(s) 8, 20, 121, 187, 548, 899, 1033
AluI AGCT 7 cut(s) 8, 20, 121, 187, 548, 899, 1033
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 1070, 1159
AlwI GGATC 4 cut(s) 247, 642, 1049, 1073
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 5 cut(s) 81, 214, 619, 961, 1194
ApeKI GCWGC 3 cut(s) 5, 449, 545
AseI ATTAAT 2 cut(s) 527, 696
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 82, 1195
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 963
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
BbsI GAAGAC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 17, 461, 557
BccI CCATC 4 cut(s) 544, 636, 898, 1106
BceAI ACGGC 1 cut(s) 1073
BciT130I CCWGG 3 cut(s) 155, 224, 1193
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 1070, 1159
BfaI CTAG 3 cut(s) 623, 638, 1199
BfmI CTRYAG 2 cut(s) 417, 792
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 5 cut(s) 6, 228, 450, 546, 1207
BlsI GCNGC 5 cut(s) 7, 229, 451, 547, 1208
Bme1390I CCNGG 4 cut(s) 155, 224, 257, 1193
BmgT120I GGNCC 2 cut(s) 82, 1195
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 4 cut(s) 155, 224, 257, 1193
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 2 cut(s) 797, 1069
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 1 cut(s) 367
Bpu10I CCTNAGC 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 101, 984
BpuMI CCSGG 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 512, 861, 1055, 1070
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 223, 617, 1088
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 4 cut(s) 855, 887, 1093, 1105
Bse21I CCTNAGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 3 cut(s) 155, 224, 1193
BseDI CCNNGG 4 cut(s) 512, 861, 1055, 1070
BseGI GGATG 4 cut(s) 647, 651, 939, 1158
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 4 cut(s) 104, 223, 617, 1088
BseMII CTCAG 5 cut(s) 150, 232, 292, 338, 792
BseNI ACTGG 4 cut(s) 855, 887, 1093, 1105
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 3 cut(s) 17, 461, 557
BseYI CCCAGC 4 cut(s) 481, 929, 1029, 1037
BshFI GGCC 5 cut(s) 83, 216, 621, 963, 1196
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 213, 257
BslFI GGGAC 5 cut(s) 125, 148, 678, 1117, 1129
BslI CCNNNNNNNGG 4 cut(s) 104, 223, 617, 1088
BsmAI GTCTC 2 cut(s) 1070, 1159
BsmBI CGTCTC 1 cut(s) 1070
BsmFI GGGAC 5 cut(s) 125, 148, 678, 1117, 1129
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 5 cut(s) 83, 216, 621, 963, 1196
Bsp1286I GDGCHC 2 cut(s) 189, 320
Bsp143I GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
BspACI CCGC 4 cut(s) 190, 227, 674, 1206
BspANI GGCC 5 cut(s) 83, 216, 621, 963, 1196
BspCNI CTCAG 5 cut(s) 149, 231, 291, 337, 793
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 2 cut(s) 421, 796
BspPI GGATC 4 cut(s) 247, 642, 1049, 1073
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 4 cut(s) 855, 887, 1093, 1105
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 512, 861, 1055, 1070
BssMI GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
BssT1I CCWWGG 3 cut(s) 512, 861, 1070
Bst2UI CCWGG 3 cut(s) 155, 224, 1193
Bst4CI ACNGT 2 cut(s) 244, 739
Bst6I CTCTTC 1 cut(s) 1157
BstC8I GCNNGC 5 cut(s) 18, 123, 214, 1035, 1204
BstDEI CTNAG 6 cut(s) 136, 218, 278, 324, 801, 1136
BstDSI CCRYGG 1 cut(s) 1055
BstF5I GGATG 4 cut(s) 647, 651, 939, 1158
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 6 cut(s) 177, 207, 255, 637, 1044, 1081
BstMAI GTCTC 2 cut(s) 1070, 1159
BstMBI GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 3 cut(s) 155, 224, 1193
BstNSI RCATGY 2 cut(s) 821, 1206
BstSCI CCNGG 4 cut(s) 153, 222, 255, 1191
BstSFI CTRYAG 2 cut(s) 417, 792
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 3 cut(s) 17, 461, 557
BstV2I GAAGAC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 1037
BstYI RGATCY 1 cut(s) 634
Bsu36I CCTNAGG 1 cut(s) 324
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 5 cut(s) 83, 216, 621, 963, 1196
BtgI CCRYGG 1 cut(s) 1055
BtsCI GGATG 4 cut(s) 647, 651, 939, 1158
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 414, 1086
Cac8I GCNNGC 5 cut(s) 18, 123, 214, 1035, 1204
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 82, 1195
CseI GACGC 1 cut(s) 1126
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 5 cut(s) 330, 442, 509, 684, 805
CviAII CATG 6 cut(s) 661, 704, 775, 818, 1050, 1203
CviQI GTAC 5 cut(s) 330, 442, 509, 684, 805
DdeI CTNAG 6 cut(s) 136, 218, 278, 324, 801, 1136
DpnI GATC 6 cut(s) 176, 206, 254, 636, 1043, 1080
DpnII GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
EaeI YGGCCR 1 cut(s) 961
Eam1104I CTCTTC 1 cut(s) 1157
EarI CTCTTC 1 cut(s) 1157
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 3 cut(s) 512, 861, 1070
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 879
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 2 cut(s) 82, 1195
EcoRII CCWGG 3 cut(s) 153, 222, 1191
EcoT14I CCWWGG 3 cut(s) 512, 861, 1070
EcoT22I ATGCAT 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 3 cut(s) 512, 861, 1070
Esp3I CGTCTC 1 cut(s) 1070
FaeI CATG 6 cut(s) 664, 707, 778, 821, 1053, 1206
FaqI GGGAC 5 cut(s) 125, 148, 678, 1117, 1129
FatI CATG 6 cut(s) 660, 703, 774, 817, 1049, 1202
FauNDI CATATG 3 cut(s) 464, 613, 751
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 5 cut(s) 6, 228, 450, 546, 1207
FokI GGATG 4 cut(s) 654, 658, 946, 1165
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 5 cut(s) 6, 228, 450, 546, 1207
FspBI CTAG 3 cut(s) 623, 638, 1199
GlaI GCGC 1 cut(s) 284
GluI GCNGC 5 cut(s) 6, 228, 450, 546, 1207
GsaI CCCAGC 4 cut(s) 485, 933, 1033, 1041
HaeIII GGCC 5 cut(s) 83, 216, 621, 963, 1196
HapII CCGG 2 cut(s) 213, 257
HgaI GACGC 1 cut(s) 1126
HhaI GCGC 1 cut(s) 285
Hin1II CATG 6 cut(s) 664, 707, 778, 821, 1053, 1206
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 6 cut(s) 43, 199, 347, 422, 797, 955
HpaII CCGG 2 cut(s) 213, 257
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 3 cut(s) 42, 1055, 1126
Hpy188I TCNGA 2 cut(s) 204, 802
Hpy188III TCNNGA 6 cut(s) 267, 722, 952, 982, 1006, 1082
Hpy8I GTNNAC 3 cut(s) 42, 1055, 1126
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 805
HpyCH4III ACNGT 2 cut(s) 244, 739
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 6 cut(s) 419, 449, 545, 778, 794, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 6 cut(s) 136, 218, 278, 324, 801, 1136
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 6 cut(s) 664, 707, 778, 821, 1053, 1206
HspAI GCGC 1 cut(s) 283
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
LmnI GCTCC 2 cut(s) 192, 785
Lsp1109I GCAGC 3 cut(s) 17, 461, 557
LweI GCATC 2 cut(s) 797, 1069
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 3 cut(s) 623, 638, 1199
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 238, 1020
MalI GATC 6 cut(s) 176, 206, 254, 636, 1043, 1080
MboI GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
MboII GAAGA 6 cut(s) 124, 226, 367, 885, 1172, 1174
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 1 cut(s) 634
MhlI GDGCHC 2 cut(s) 189, 320
MlsI TGGCCA 1 cut(s) 963
MluCI AATT 8 cut(s) 87, 427, 524, 540, 693, 744, 780, 1142
MluNI TGGCCA 1 cut(s) 963
MlyI GAGTC 2 cut(s) 37, 356
MmeI TCCRAC 1 cut(s) 886
Mox20I TGGCCA 1 cut(s) 963
Mph1103I ATGCAT 1 cut(s) 823
MroNI GCCGGC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 963
MseI TTAA 5 cut(s) 246, 306, 527, 696, 761
MslI CAYNNNNRTG 1 cut(s) 969
Msp20I TGGCCA 1 cut(s) 963
MspI CCGG 2 cut(s) 213, 257
MspR9I CCNGG 4 cut(s) 155, 224, 257, 1193
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 3 cut(s) 155, 224, 1193
MwoI GCNNNNNNNGC 1 cut(s) 455
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 257
NdeI CATATG 3 cut(s) 464, 613, 751
NdeII GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 6 cut(s) 664, 707, 778, 821, 1053, 1206
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 238, 1020
NsiI ATGCAT 1 cut(s) 823
NspI RCATGY 2 cut(s) 821, 1206
PaeI GCATGC 1 cut(s) 1206
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 1 cut(s) 821
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 4 cut(s) 199, 422, 797, 955
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 5 cut(s) 7, 229, 451, 547, 1208
PleI GAGTC 2 cut(s) 37, 355
PpsI GAGTC 2 cut(s) 37, 355
PshBI ATTAAT 2 cut(s) 527, 696
PsiI TTATAA 1 cut(s) 879
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 153, 222, 1191
PspFI CCCAGC 4 cut(s) 481, 929, 1029, 1037
PspGI CCWGG 3 cut(s) 153, 222, 1191
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 82, 1195
PstI CTGCAG 2 cut(s) 421, 796
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 5 cut(s) 331, 443, 510, 685, 806
RsaNI GTAC 5 cut(s) 330, 442, 509, 684, 805
RseI CAYNNNNRTG 1 cut(s) 969
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 40
SaqAI TTAA 5 cut(s) 246, 306, 527, 696, 761
SatI GCNGC 5 cut(s) 6, 228, 450, 546, 1207
Sau3AI GATC 6 cut(s) 174, 204, 252, 634, 1041, 1078
Sau96I GGNCC 2 cut(s) 82, 1195
SchI GAGTC 2 cut(s) 37, 356
ScrFI CCNGG 4 cut(s) 155, 224, 257, 1193
SduI GDGCHC 2 cut(s) 189, 320
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 2 cut(s) 797, 1069
SfcI CTRYAG 2 cut(s) 417, 792
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 2 cut(s) 116, 999
SmoI CTYRAG 2 cut(s) 116, 999
SphI GCATGC 1 cut(s) 1206
Sse9I AATT 8 cut(s) 87, 427, 524, 540, 693, 744, 780, 1142
SsiI CCGC 4 cut(s) 190, 227, 674, 1206
SspI AATATT 2 cut(s) 393, 700
SspMI CTAG 3 cut(s) 623, 638, 1199
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 4 cut(s) 153, 222, 255, 1191
StyI CCWWGG 3 cut(s) 512, 861, 1070
TaaI ACNGT 2 cut(s) 244, 739
TaiI ACGT 1 cut(s) 276
TaqI TCGA 4 cut(s) 10, 41, 177, 197
TasI AATT 8 cut(s) 87, 427, 524, 540, 693, 744, 780, 1142
TatI WGTACW 2 cut(s) 441, 804
TauI GCSGC 2 cut(s) 230, 1209
TfiI GAWTC 4 cut(s) 199, 422, 797, 955
Tru1I TTAA 5 cut(s) 246, 306, 527, 696, 761
Tru9I TTAA 5 cut(s) 246, 306, 527, 696, 761
TscAI CASTG 2 cut(s) 421, 1093
TseFI GTSAC 2 cut(s) 238, 1020
TseI GCWGC 3 cut(s) 5, 449, 545
Tsp45I GTSAC 2 cut(s) 238, 1020
TspDTI ATGAA 2 cut(s) 692, 738
TspRI CASTG 2 cut(s) 421, 1093
Van91I CCANNNNNTGG 1 cut(s) 617
VspI ATTAAT 2 cut(s) 527, 696
XceI RCATGY 2 cut(s) 821, 1206
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 3 cut(s) 623, 638, 1199
Zsp2I ATGCAT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.