RchiOBHm_Chr3g0484511

UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
30854779 .. 30860020
5242 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44922

Sequence Viewer

Length: 1263 bp
ATGGCAGCTCGGAAGCGAGCTTCAACAAACTCGTCCTCCTCGACTCAAACCAAACCAAGCGATCGCGAGCCACCCAAAACCCAAGAAGCAGCAGCAGAAGCGCCAATCTCAGCACCCAAGTCTGGTGTGATTCTGAAGCTGACGGCGTTGTTCTCCGTCCCCTACTTTTACCTGGTCTTGTACCATTACAAGATTGAGCAGGAGCTCAGAAATTCGATTCTGATCAATGCCGCCCTCAGCCTCGCGGCGTTCTTCGTCACCGTTAAGATGATCCCTGTGGCTTCTAGATACGTTCTCAGGCGCAATCTGTTTGGCTACGATATTAACAAAAAGGGTACTCCTCAGGGTACTATTAAAGTGCCAGAGTCGTTGGGCATTGTTGTTGGAATTGTCTTCTTGGTCTTTTCGATATTATTTCAGTATTTCAACTTCACTGCAGATTCAAATTGGCTTGTTGAGTACAATGCAGCATTAGCCTCCATATGCTTTATGGTATTGCTGGGATTTGTAGATGATGTTCTTGATGGAGAGAAATTAATACTGCCATCAATTGCAGCTTTACCTCTGCTGGTGGCTTATGCTGGACATACAACTATTATCATACCAAAGCCTCTTGTTCCATATGTTGGGCTAGAGGTCTGGGATCTAGGATGGATGTATAAACTATATATGGGACTTTTGGCGGTTTTCTGTACAAACTCAATTAATATTCATGCTGGATTGAATGGTCTTGAAGTTGGCCAGACAGTTGTAATTGCATCTGCTATTTTAATACACAATATCATGCAAATTGGAGCATCTGTAGATTTTGAGTACAAGATGGCACACGCATTCTCTATATATCTTGCCCAACCCTTACTGGCAACCTCCTTGGCATTGTTCTCTTACAACTGGTATCCTTCTTCAGCTTTTGTTGGAGATACTTACACATACTTTGCTGGGATGACTATGGCTGTAGTTGGGATTCTTGGCCATTTTAGTGAAACGCTCCTGATTTTCTTTCTCCCTCAAGTCTTGAACTTTCTCTTGTCGCTGCCCCAGCTTGCTGGGATCATTCCATGTCCGCGCCATCGTCTCCCAAGGTTCGATCCTGAAACTGGACTGCTGACTGGGACAAATGATGGGACGCTTGTAAACTTGTTCCTAAGACAATTTGGCAGGATGACAGAGAAGAAACTTTGTGTTTATCTTCTCGTTTTCCAGGCTCTAGCATGCTGCTTCTGTTTCCTGTTGAGATACTTCCTTGCTGGTTGGTATAAATGA

Protein Analysis

420

Amino Acids

46.6

Weight (kDa)

8.68

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 157 - 324 8.1e-22 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 3 cut(s) 66, 245, 1066
AciI CCGC 4 cut(s) 231, 245, 683, 1064
AclWI GGATC 4 cut(s) 265, 651, 1058, 1082
AcoI YGGCCR 2 cut(s) 739, 970
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 155, 888
AfaI GTAC 6 cut(s) 182, 337, 349, 461, 694, 815
AfiI CCNNNNNNNGG 3 cut(s) 122, 626, 1097
AgsI TTSAA 6 cut(s) 24, 427, 444, 724, 734, 1018
AjnI CCWGG 2 cut(s) 171, 1200
AluBI AGCT 7 cut(s) 8, 20, 139, 205, 557, 908, 1042
AluI AGCT 7 cut(s) 8, 20, 139, 205, 557, 908, 1042
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 1079
AlwI GGATC 4 cut(s) 265, 651, 1058, 1082
AoxI GGCC 2 cut(s) 739, 970
ApeKI GCWGC 7 cut(s) 5, 89, 92, 467, 554, 1033, 1215
ApoI RAATTY 1 cut(s) 211
AseI ATTAAT 2 cut(s) 536, 705
AsiSI GCGATCGC 1 cut(s) 64
AspLEI GCGC 3 cut(s) 103, 303, 1068
AsuHPI GGTGA 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 342
BalI TGGCCA 2 cut(s) 741, 972
BanII GRGCYC 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 413, 445
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 7 cut(s) 17, 101, 104, 479, 566, 1020, 1202
BccI CCATC 6 cut(s) 518, 553, 645, 814, 1077, 1115
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 173, 1202
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 1079
BfaI CTAG 4 cut(s) 285, 632, 647, 1208
BfmI CTRYAG 3 cut(s) 435, 801, 954
BfoI RGCGCY 1 cut(s) 104
BfuI GTATCC 1 cut(s) 906
BisI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 555, 1034, 1216
BlsI GCNGC 9 cut(s) 7, 91, 94, 232, 247, 469, 556, 1035, 1217
Bme1390I CCNGG 2 cut(s) 173, 1202
BmrFI CCNGG 2 cut(s) 173, 1202
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 2 cut(s) 767, 806
BmuI ACTGGG 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 870, 1079
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 786, 816
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 626, 1097
Bse1I ACTGG 4 cut(s) 864, 896, 1102, 1114
Bse21I CCTNAGG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 2 cut(s) 173, 1202
BseDI CCNNGG 2 cut(s) 870, 1079
BseGI GGATG 4 cut(s) 656, 660, 948, 1167
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 3 cut(s) 122, 626, 1097
BseMII CTCAG 5 cut(s) 123, 220, 250, 310, 356
BseNI ACTGG 4 cut(s) 864, 896, 1102, 1114
BseRI GAGGAG 2 cut(s) 28, 330
BseXI GCAGC 7 cut(s) 17, 101, 104, 479, 566, 1020, 1202
BseYI CCCAGC 4 cut(s) 499, 938, 1038, 1046
Bsh1236I CGCG 3 cut(s) 66, 245, 1066
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 741, 972
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 4 cut(s) 143, 687, 1126, 1138
BslI CCNNNNNNNGG 3 cut(s) 122, 626, 1097
BsmAI GTCTC 1 cut(s) 1079
BsmBI CGTCTC 1 cut(s) 1079
BsmFI GGGAC 4 cut(s) 143, 687, 1126, 1138
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 2 cut(s) 741, 972
Bsp1286I GDGCHC 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 692
Bsp143I GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 4 cut(s) 231, 245, 683, 1064
BspANI GGCC 2 cut(s) 741, 972
BspCNI CTCAG 5 cut(s) 122, 219, 249, 309, 355
BspFNI CGCG 3 cut(s) 66, 245, 1066
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 4 cut(s) 265, 651, 1058, 1082
BsrGI TGTACA 1 cut(s) 692
BsrI ACTGG 4 cut(s) 864, 896, 1102, 1114
BssECI CCNNGG 2 cut(s) 870, 1079
BssMI GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
BssT1I CCWWGG 2 cut(s) 870, 1079
Bst2UI CCWGG 2 cut(s) 173, 1202
Bst4CI ACNGT 2 cut(s) 262, 748
BstAUI TGTACA 1 cut(s) 692
BstC8I GCNNGC 4 cut(s) 18, 68, 1044, 1213
BstDEI CTNAG 6 cut(s) 109, 206, 236, 296, 342, 1145
BstF5I GGATG 4 cut(s) 656, 660, 948, 1167
BstFNI CGCG 3 cut(s) 66, 245, 1066
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 3 cut(s) 103, 303, 1068
BstKTI GATC 6 cut(s) 64, 225, 273, 646, 1053, 1090
BstMAI GTCTC 1 cut(s) 1079
BstMBI GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 3 cut(s) 98, 473, 1039
BstNI CCWGG 2 cut(s) 173, 1202
BstNSI RCATGY 1 cut(s) 1215
BstSCI CCNGG 2 cut(s) 171, 1200
BstSFI CTRYAG 3 cut(s) 435, 801, 954
BstUI CGCG 3 cut(s) 66, 245, 1066
BstV1I GCAGC 7 cut(s) 17, 101, 104, 479, 566, 1020, 1202
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 643
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 2 cut(s) 741, 972
BtsCI GGATG 4 cut(s) 656, 660, 948, 1167
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 4 cut(s) 18, 68, 1044, 1213
CfoI GCGC 3 cut(s) 103, 303, 1068
CseI GACGC 1 cut(s) 1135
CsiI ACCWGGT 1 cut(s) 171
Csp6I GTAC 6 cut(s) 181, 336, 348, 460, 693, 814
CviAII CATG 4 cut(s) 713, 784, 1059, 1212
CviQI GTAC 6 cut(s) 181, 336, 348, 460, 693, 814
DdeI CTNAG 6 cut(s) 109, 206, 236, 296, 342, 1145
DpnI GATC 6 cut(s) 63, 224, 272, 645, 1052, 1089
DpnII GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
EaeI YGGCCR 2 cut(s) 739, 970
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 870, 1079
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 155, 888
Eco81I CCTNAGG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 171, 1200
EcoT14I CCWWGG 2 cut(s) 870, 1079
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 870, 1079
Esp3I CGTCTC 1 cut(s) 1079
FaeI CATG 4 cut(s) 716, 787, 1062, 1215
FaqI GGGAC 4 cut(s) 143, 687, 1126, 1138
FatI CATG 4 cut(s) 712, 783, 1058, 1211
FauNDI CATATG 2 cut(s) 482, 622
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 555, 1034, 1216
FokI GGATG 4 cut(s) 663, 667, 955, 1174
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 555, 1034, 1216
FspBI CTAG 4 cut(s) 285, 632, 647, 1208
GlaI GCGC 3 cut(s) 102, 302, 1067
GluI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 555, 1034, 1216
GsaI CCCAGC 4 cut(s) 503, 942, 1042, 1050
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 741, 972
HgaI GACGC 1 cut(s) 1135
HhaI GCGC 3 cut(s) 103, 303, 1068
Hin1II CATG 4 cut(s) 716, 787, 1062, 1215
Hin6I GCGC 3 cut(s) 101, 301, 1066
HinP1I GCGC 3 cut(s) 101, 301, 1066
HinfI GANTC 6 cut(s) 43, 130, 217, 365, 440, 964
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 1135
Hpy188I TCNGA 4 cut(s) 12, 135, 209, 222
Hpy188III TCNNGA 7 cut(s) 65, 285, 521, 731, 991, 1015, 1091
Hpy8I GTNNAC 1 cut(s) 1135
HpyAV CCTTC 1 cut(s) 909
HpyCH4III ACNGT 2 cut(s) 262, 748
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 437, 467, 554, 758, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 473, 1039
HpyF3I CTNAG 6 cut(s) 109, 206, 236, 296, 342, 1145
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 716, 787, 1062, 1215
HspAI GCGC 3 cut(s) 101, 301, 1066
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
LmnI GCTCC 3 cut(s) 202, 794, 993
Lsp1109I GCAGC 7 cut(s) 17, 101, 104, 479, 566, 1020, 1202
LweI GCATC 2 cut(s) 767, 806
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 4 cut(s) 285, 632, 647, 1208
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 256
MalI GATC 6 cut(s) 63, 224, 272, 645, 1052, 1089
MboI GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
MboII GAAGA 5 cut(s) 244, 385, 894, 1181, 1183
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 2 cut(s) 741, 972
MluCI AATT 9 cut(s) 211, 387, 445, 533, 549, 702, 753, 789, 1151
MluNI TGGCCA 2 cut(s) 741, 972
MlyI GAGTC 2 cut(s) 37, 374
MmeI TCCRAC 2 cut(s) 364, 895
Mox20I TGGCCA 2 cut(s) 741, 972
MscI TGGCCA 2 cut(s) 741, 972
MseI TTAA 6 cut(s) 264, 324, 354, 536, 705, 770
MslI CAYNNNNRTG 1 cut(s) 978
Msp20I TGGCCA 2 cut(s) 741, 972
MspR9I CCNGG 2 cut(s) 173, 1202
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 2 cut(s) 173, 1202
MvnI CGCG 3 cut(s) 66, 245, 1066
MwoI GCNNNNNNNGC 3 cut(s) 98, 473, 1039
NdeI CATATG 2 cut(s) 482, 622
NdeII GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
NlaIII CATG 4 cut(s) 716, 787, 1062, 1215
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 66
NspI RCATGY 1 cut(s) 1215
PaeI GCATGC 1 cut(s) 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 4 cut(s) 130, 217, 440, 964
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 9 cut(s) 7, 91, 94, 232, 247, 469, 556, 1035, 1217
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 2 cut(s) 37, 373
PpsI GAGTC 2 cut(s) 37, 373
PshBI ATTAAT 2 cut(s) 536, 705
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 171, 1200
PspFI CCCAGC 4 cut(s) 499, 938, 1038, 1046
PspGI CCWGG 2 cut(s) 171, 1200
PsrI GAACNNNNNNTAC 2 cut(s) 501, 533
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 1 cut(s) 643
PvuI CGATCG 1 cut(s) 64
RgaI GCGATCGC 1 cut(s) 64
RruI TCGCGA 1 cut(s) 66
RsaI GTAC 6 cut(s) 182, 337, 349, 461, 694, 815
RsaNI GTAC 6 cut(s) 181, 336, 348, 460, 693, 814
RseI CAYNNNNRTG 1 cut(s) 978
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 6 cut(s) 264, 324, 354, 536, 705, 770
SatI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 555, 1034, 1216
Sau3AI GATC 6 cut(s) 61, 222, 270, 643, 1050, 1087
SchI GAGTC 2 cut(s) 37, 374
ScrFI CCNGG 2 cut(s) 173, 1202
SduI GDGCHC 1 cut(s) 207
SexAI ACCWGGT 1 cut(s) 171
SfaAI GCGATCGC 1 cut(s) 64
SfaNI GCATC 2 cut(s) 767, 806
SfcI CTRYAG 3 cut(s) 435, 801, 954
SgfI GCGATCGC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 978
SmlI CTYRAG 1 cut(s) 1008
SmoI CTYRAG 1 cut(s) 1008
SphI GCATGC 1 cut(s) 1215
Sse9I AATT 9 cut(s) 211, 387, 445, 533, 549, 702, 753, 789, 1151
SsiI CCGC 4 cut(s) 231, 245, 683, 1064
SspI AATATT 1 cut(s) 709
SspMI CTAG 4 cut(s) 285, 632, 647, 1208
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 171, 1200
StyI CCWWGG 2 cut(s) 870, 1079
TaaI ACNGT 2 cut(s) 262, 748
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 41, 215, 407, 1086
TasI AATT 9 cut(s) 211, 387, 445, 533, 549, 702, 753, 789, 1151
TatI WGTACW 3 cut(s) 459, 692, 813
TauI GCSGC 2 cut(s) 233, 248
TfiI GAWTC 4 cut(s) 130, 217, 440, 964
Tru1I TTAA 6 cut(s) 264, 324, 354, 536, 705, 770
Tru9I TTAA 6 cut(s) 264, 324, 354, 536, 705, 770
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 7 cut(s) 5, 89, 92, 467, 554, 1033, 1215
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 701
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 626
VspI ATTAAT 2 cut(s) 536, 705
XapI RAATTY 1 cut(s) 211
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 1 cut(s) 1215
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 4 cut(s) 285, 632, 647, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.