Rw3G023470

UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
29417101 .. 29422595
5495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023470.1

Sequence Viewer

Length: 1272 bp
ATGGCAGCTCGGAAGCGAGCTTCAACAAACTCGTCCTCCTCGACTCAAACCAAACCAAGCGATCGCGAGCCACCCAAAACCCAAGAAGCAGCAGCAGAAGCGCCAATCTCAGCACCCAAGTCTGGTGTGATTCTGAAGCTGACGGCGTTGTTCTCCGTCCCCTACTTTTACCTGGTCTTGTACCATTACAAGATTGAGCAGGAGCTCAGAAATTCGATTCTGATCAATGCCGCCCTCAGCCTCGCGGCGTTCTTCGTCACCGTTAAGATGATCCCTGTGGCTTCTAGATACGTTCTCAGGCGCAATCTGTTTGGCTACGATATTAACAAAAAGGGTACTCCTCAGGGTACTATTAAAGTGCCAGAGTCGTTGGGCATTGTTGTTGGAATTGTCTTCTTGGTCTTTTCGATATTGTTTCAGTATTTCAACTTCACTGCAGATTCAAATTGGCTTGTTGAGTACAATGCAGCATTAGCCTCCATATGCTTTATGGTATTGCTGGGATTTGTAGATGATGTTCTTGATGTACCGTGGAGAGTGAAATTAATACTGCCATCAATTGCAGCTTTACCTCTGCTGATGGCTTATGCTGGACATACAACTATTATCATACCGAAGCCTCTTGTTCCATATGTTGGGCTAGAGGTCTGGGATCTAGGATGGATGTATAAACTATATATGGGACTTTTGGCGGTTTTCTGTACAAACTCAATTAATATTCATGCTGGATTGAATGGTCTTGAAGTTGGCCAGACAGTTGTAATTGCATCTGCTATTTTAATACACAATATCATGCAAATTGGAGCATCTGTAGATTTTGAGTACAAGATGGCACACGCATTCTCTATATATCTTGCCCAACCCTTACTGGCAACCTCCTTGGCATTGTTCTCTTACAACTGGTATCCTTCTTCAGCTTTTGTTGGAGATACGTACACATACTTTGCTGGGATGACTATGGCTGTAGTTGGGATTCTTGGCCATTTTAGTGAAACGCTCCTGATTTTCTTTCTCCCTCAAGTCTTGAACTTTCTCTTGTCGCTGCCCCAGCTTGCTGGGATCATTCCATGTCCGCGCCATCGTCTCCCAAGGTTCAATCCTGAAACTGGACTGCTGACTGGGACAAATGATGGAACGCTTGTAAACTTGTTCCTAAGACAATTTGGCAGGATGACAGAGAAGAAACTTTGTGTTTATCTTCTCGTTTTCCAGGCTCTAGCATGCGGCTTCTGTTTCCTGTTGAGATACTTCCTTGCTGGTTGGTATAAATGA

Protein Analysis

423

Amino Acids

47.03

Weight (kDa)

9.05

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 157 - 327 9.9e-27 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 635
AccII CGCG 3 cut(s) 66, 245, 1075
AciI CCGC 5 cut(s) 231, 245, 692, 1073, 1224
AclWI GGATC 3 cut(s) 265, 660, 1067
AcoI YGGCCR 2 cut(s) 748, 979
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 155, 897
AfaI GTAC 8 cut(s) 182, 337, 349, 461, 528, 703, 824, 935
AfiI CCNNNNNNNGG 3 cut(s) 122, 635, 1106
AgsI TTSAA 7 cut(s) 24, 427, 444, 733, 743, 1027, 1096
AjnI CCWGG 2 cut(s) 171, 1209
AluBI AGCT 7 cut(s) 8, 20, 139, 205, 566, 917, 1051
AluI AGCT 7 cut(s) 8, 20, 139, 205, 566, 917, 1051
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 1088
AlwI GGATC 3 cut(s) 265, 660, 1067
AoxI GGCC 2 cut(s) 748, 979
ApeKI GCWGC 6 cut(s) 5, 89, 92, 467, 563, 1042
ApoI RAATTY 1 cut(s) 211
AseI ATTAAT 2 cut(s) 545, 714
AsiSI GCGATCGC 1 cut(s) 64
AspLEI GCGC 3 cut(s) 103, 303, 1077
AsuHPI GGTGA 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 342
BalI TGGCCA 2 cut(s) 750, 981
BanII GRGCYC 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 413, 445
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 6 cut(s) 17, 101, 104, 479, 575, 1029
BccI CCATC 6 cut(s) 562, 574, 654, 823, 1086, 1124
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 173, 1211
BciVI GTATCC 1 cut(s) 915
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 1088
BfaI CTAG 4 cut(s) 285, 641, 656, 1217
BfmI CTRYAG 3 cut(s) 435, 810, 963
BfoI RGCGCY 1 cut(s) 104
BfuI GTATCC 1 cut(s) 915
BisI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 564, 1043, 1225
BlsI GCNGC 9 cut(s) 7, 91, 94, 232, 247, 469, 565, 1044, 1226
Bme1390I CCNGG 2 cut(s) 173, 1211
BmrFI CCNGG 2 cut(s) 173, 1211
BmrI ACTGGG 1 cut(s) 1128
BmsI GCATC 2 cut(s) 776, 815
BmuI ACTGGG 1 cut(s) 1128
BpiI GAAGAC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 1002
BsaAI YACGTR 1 cut(s) 933
BsaBI GATNNNNATC 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 530, 879, 1088
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 795, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 635, 1106
Bse1I ACTGG 4 cut(s) 873, 905, 1111, 1123
Bse21I CCTNAGG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 2 cut(s) 173, 1211
BseDI CCNNGG 3 cut(s) 530, 879, 1088
BseGI GGATG 4 cut(s) 665, 669, 957, 1176
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 3 cut(s) 122, 635, 1106
BseMII CTCAG 5 cut(s) 123, 220, 250, 310, 356
BseNI ACTGG 4 cut(s) 873, 905, 1111, 1123
BseRI GAGGAG 2 cut(s) 28, 330
BseXI GCAGC 6 cut(s) 17, 101, 104, 479, 575, 1029
BseYI CCCAGC 4 cut(s) 499, 947, 1047, 1055
Bsh1236I CGCG 3 cut(s) 66, 245, 1075
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 750, 981
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 3 cut(s) 143, 696, 1135
BslI CCNNNNNNNGG 3 cut(s) 122, 635, 1106
BsmAI GTCTC 1 cut(s) 1088
BsmBI CGTCTC 1 cut(s) 1088
BsmFI GGGAC 3 cut(s) 143, 696, 1135
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 2 cut(s) 750, 981
Bsp1286I GDGCHC 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 701
Bsp143I GATC 5 cut(s) 61, 222, 270, 652, 1059
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 5 cut(s) 231, 245, 692, 1073, 1224
BspANI GGCC 2 cut(s) 750, 981
BspCNI CTCAG 5 cut(s) 122, 219, 249, 309, 355
BspFNI CGCG 3 cut(s) 66, 245, 1075
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 3 cut(s) 265, 660, 1067
BsrGI TGTACA 1 cut(s) 701
BsrI ACTGG 4 cut(s) 873, 905, 1111, 1123
BssECI CCNNGG 3 cut(s) 530, 879, 1088
BssMI GATC 5 cut(s) 61, 222, 270, 652, 1059
BssT1I CCWWGG 2 cut(s) 879, 1088
Bst2UI CCWGG 2 cut(s) 173, 1211
Bst4CI ACNGT 3 cut(s) 262, 531, 757
BstAUI TGTACA 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 933
BstC8I GCNNGC 4 cut(s) 18, 68, 1053, 1222
BstDEI CTNAG 6 cut(s) 109, 206, 236, 296, 342, 1154
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 4 cut(s) 665, 669, 957, 1176
BstFNI CGCG 3 cut(s) 66, 245, 1075
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 3 cut(s) 103, 303, 1077
BstKTI GATC 5 cut(s) 64, 225, 273, 655, 1062
BstMAI GTCTC 1 cut(s) 1088
BstMBI GATC 5 cut(s) 61, 222, 270, 652, 1059
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 3 cut(s) 98, 473, 1048
BstNI CCWGG 2 cut(s) 173, 1211
BstNSI RCATGY 1 cut(s) 1224
BstSCI CCNGG 2 cut(s) 171, 1209
BstSFI CTRYAG 3 cut(s) 435, 810, 963
BstSNI TACGTA 1 cut(s) 933
BstUI CGCG 3 cut(s) 66, 245, 1075
BstV1I GCAGC 6 cut(s) 17, 101, 104, 479, 575, 1029
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 1055
BstYI RGATCY 1 cut(s) 652
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 915
BsuRI GGCC 2 cut(s) 750, 981
BtgI CCRYGG 1 cut(s) 530
BtsCI GGATG 4 cut(s) 665, 669, 957, 1176
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 4 cut(s) 18, 68, 1053, 1222
CfoI GCGC 3 cut(s) 103, 303, 1077
CsiI ACCWGGT 1 cut(s) 171
Csp6I GTAC 8 cut(s) 181, 336, 348, 460, 527, 702, 823, 934
CviAII CATG 4 cut(s) 722, 793, 1068, 1221
CviQI GTAC 8 cut(s) 181, 336, 348, 460, 527, 702, 823, 934
DdeI CTNAG 6 cut(s) 109, 206, 236, 296, 342, 1154
DpnI GATC 5 cut(s) 63, 224, 272, 654, 1061
DpnII GATC 5 cut(s) 61, 222, 270, 652, 1059
EaeI YGGCCR 2 cut(s) 748, 979
Ecl136II GAGCTC 1 cut(s) 205
Eco105I TACGTA 1 cut(s) 933
Eco130I CCWWGG 2 cut(s) 879, 1088
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 155, 897
Eco81I CCTNAGG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 171, 1209
EcoT14I CCWWGG 2 cut(s) 879, 1088
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 879, 1088
Esp3I CGTCTC 1 cut(s) 1088
FaeI CATG 4 cut(s) 725, 796, 1071, 1224
FaqI GGGAC 3 cut(s) 143, 696, 1135
FatI CATG 4 cut(s) 721, 792, 1067, 1220
FauNDI CATATG 2 cut(s) 482, 631
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 564, 1043, 1225
FokI GGATG 4 cut(s) 672, 676, 964, 1183
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 564, 1043, 1225
FspBI CTAG 4 cut(s) 285, 641, 656, 1217
GlaI GCGC 3 cut(s) 102, 302, 1076
GluI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 564, 1043, 1225
GsaI CCCAGC 4 cut(s) 503, 951, 1051, 1059
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 750, 981
HhaI GCGC 3 cut(s) 103, 303, 1077
Hin1II CATG 4 cut(s) 725, 796, 1071, 1224
Hin6I GCGC 3 cut(s) 101, 301, 1075
HinP1I GCGC 3 cut(s) 101, 301, 1075
HinfI GANTC 6 cut(s) 43, 130, 217, 365, 440, 973
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 936, 1144
Hpy188I TCNGA 4 cut(s) 12, 135, 209, 222
Hpy188III TCNNGA 7 cut(s) 65, 285, 521, 740, 1000, 1024, 1100
Hpy8I GTNNAC 2 cut(s) 936, 1144
HpyAV CCTTC 1 cut(s) 918
HpyCH4III ACNGT 3 cut(s) 262, 531, 757
HpyCH4IV ACGT 2 cut(s) 291, 932
HpyCH4V TGCA 5 cut(s) 437, 467, 563, 767, 796
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 473, 1048
HpyF3I CTNAG 6 cut(s) 109, 206, 236, 296, 342, 1154
HpySE526I ACGT 2 cut(s) 291, 932
Hsp92II CATG 4 cut(s) 725, 796, 1071, 1224
HspAI GCGC 3 cut(s) 101, 301, 1075
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 5 cut(s) 61, 222, 270, 652, 1059
LmnI GCTCC 3 cut(s) 202, 803, 1002
Lsp1109I GCAGC 6 cut(s) 17, 101, 104, 479, 575, 1029
LweI GCATC 2 cut(s) 776, 815
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 4 cut(s) 285, 641, 656, 1217
MaeII ACGT 2 cut(s) 291, 932
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 63, 224, 272, 654, 1061
MboI GATC 5 cut(s) 61, 222, 270, 652, 1059
MboII GAAGA 5 cut(s) 244, 385, 903, 1190, 1192
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 2 cut(s) 750, 981
MluCI AATT 9 cut(s) 211, 387, 445, 542, 558, 711, 762, 798, 1160
MluNI TGGCCA 2 cut(s) 750, 981
MlyI GAGTC 2 cut(s) 37, 374
MmeI TCCRAC 2 cut(s) 364, 904
Mox20I TGGCCA 2 cut(s) 750, 981
MscI TGGCCA 2 cut(s) 750, 981
MseI TTAA 6 cut(s) 264, 324, 354, 545, 714, 779
MslI CAYNNNNRTG 1 cut(s) 987
Msp20I TGGCCA 2 cut(s) 750, 981
MspR9I CCNGG 2 cut(s) 173, 1211
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 2 cut(s) 173, 1211
MvnI CGCG 3 cut(s) 66, 245, 1075
MwoI GCNNNNNNNGC 3 cut(s) 98, 473, 1048
NdeI CATATG 2 cut(s) 482, 631
NdeII GATC 5 cut(s) 61, 222, 270, 652, 1059
NlaIII CATG 4 cut(s) 725, 796, 1071, 1224
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 66
NspI RCATGY 1 cut(s) 1224
PaeI GCATGC 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 1 cut(s) 839
PfeI GAWTC 4 cut(s) 130, 217, 440, 973
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 9 cut(s) 7, 91, 94, 232, 247, 469, 565, 1044, 1226
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 2 cut(s) 37, 373
PpsI GAGTC 2 cut(s) 37, 373
Ppu21I YACGTR 1 cut(s) 933
PshBI ATTAAT 2 cut(s) 545, 714
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 171, 1209
PspFI CCCAGC 4 cut(s) 499, 947, 1047, 1055
PspGI CCWGG 2 cut(s) 171, 1209
PsrI GAACNNNNNNTAC 2 cut(s) 501, 533
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 1 cut(s) 652
PvuI CGATCG 1 cut(s) 64
RgaI GCGATCGC 1 cut(s) 64
RruI TCGCGA 1 cut(s) 66
RsaI GTAC 8 cut(s) 182, 337, 349, 461, 528, 703, 824, 935
RsaNI GTAC 8 cut(s) 181, 336, 348, 460, 527, 702, 823, 934
RseI CAYNNNNRTG 1 cut(s) 987
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 6 cut(s) 264, 324, 354, 545, 714, 779
SatI GCNGC 9 cut(s) 6, 90, 93, 231, 246, 468, 564, 1043, 1225
Sau3AI GATC 5 cut(s) 61, 222, 270, 652, 1059
SchI GAGTC 2 cut(s) 37, 374
ScrFI CCNGG 2 cut(s) 173, 1211
SduI GDGCHC 1 cut(s) 207
SexAI ACCWGGT 1 cut(s) 171
SfaAI GCGATCGC 1 cut(s) 64
SfaNI GCATC 2 cut(s) 776, 815
SfcI CTRYAG 3 cut(s) 435, 810, 963
SgfI GCGATCGC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
SnaBI TACGTA 1 cut(s) 933
SphI GCATGC 1 cut(s) 1224
Sse9I AATT 9 cut(s) 211, 387, 445, 542, 558, 711, 762, 798, 1160
SsiI CCGC 5 cut(s) 231, 245, 692, 1073, 1224
SspI AATATT 1 cut(s) 718
SspMI CTAG 4 cut(s) 285, 641, 656, 1217
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 171, 1209
StyI CCWWGG 2 cut(s) 879, 1088
TaaI ACNGT 3 cut(s) 262, 531, 757
TaiI ACGT 2 cut(s) 294, 935
TaqI TCGA 3 cut(s) 41, 215, 407
TasI AATT 9 cut(s) 211, 387, 445, 542, 558, 711, 762, 798, 1160
TatI WGTACW 3 cut(s) 459, 701, 822
TauI GCSGC 3 cut(s) 233, 248, 1227
TfiI GAWTC 4 cut(s) 130, 217, 440, 973
Tru1I TTAA 6 cut(s) 264, 324, 354, 545, 714, 779
Tru9I TTAA 6 cut(s) 264, 324, 354, 545, 714, 779
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 6 cut(s) 5, 89, 92, 467, 563, 1042
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 635
VspI ATTAAT 2 cut(s) 545, 714
XapI RAATTY 1 cut(s) 211
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 1 cut(s) 1224
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 4 cut(s) 285, 641, 656, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.