Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005009

Physical Location & Seq

Genomic Coordinates Reverse (-)

18859771 .. 18861246

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAAGAAACCCACTTCCTCTCCACCTCAAACCCCAAACCCTTCTCCTCCATTCCCCTCCCCAACCCAAACCCAAACCCAAATCCCAAATCCCAATTCCAATCCTCCTCCTCCTCCTCCCACCATGACCCTTCTTTCCACTCCCCCAAAACCCCTCACTTCCCCATCCTCTCCACCAAAACCAAAACCAAAACCCCATCATCATCATCCCCCCAAATCCTCAAATCCCTCAAACCCCAAATCCCCCCTCCCCCCTCCGACTTCCACGACAAGGCCCTCTACCTCGACTCCATCGGCCTCGACCTCTTCTCCCTCCTCCACCACCACCCTCCCATCGTCTCCGCCTCCCTCCCCGACCTCAAATCCACCGTCCATTTCCTCACCTCCATGGGCTTCTCCACACCCGAGTTCCGCCGCCTCGTCGGCATGTGCCCCGAAATCCTCGCCTCCCGCGTCTCCGACATCATCCCCATCTTCACCTTCCTCCTCCGCGAGGCCCGCGTCAACGGCTCCGATCTCAAGCGCGTCATAAACCGACGACCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCGCCCCACCCTTTACTTCCTCCAGTCCATCGGCATAGCCGACGTCAACAAGCACACCTCTCTGCTCTCCTGCAGCGTCGAGGACAAGCTCCAGCCCCGCGTCGACTACCTCGAAAAAATCGGGTTTTCGCGGCGGGACGCATTGGCCATGTTCCGGCGGTTCCCGCAGCTGTTCTGCTACAGCATTGAGCATAATTTCGAGCCCAAGTTCAATTACTTTGTGGTGGAAATGGGGAGGGAGTTGAAGGAGCTCAAGGAGTTTCCGCACTACTTCTCGTTTAGCTTAGAGAATCGGATTCGGCCGAGGCATCAGAGGTGTGTGGAGAAGGGTGTCTGCTTTCCTTTGCCGATTTTGTTAAAGACCAGTGAGGCCAAGTTCCGGGAGAGATTGGAGGTTTGTTGTAATTCTTCCATCCCGTTGAGAAATTCTCCTTTGTGGTGTACAAATTCCATTTCTGGTGATTTAGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003975 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006489 GO:0006490 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016780 GO:0019538 GO:0019637 GO:0031224 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046465 GO:0070085 GO:0071704 GO:0090407 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glycos_transf_4

Protein Analysis

349

Amino Acids

39.86

Weight (kDa)

9.57

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	101 - 165	3.9e-06	mTERF
mTERF	PF02536	163 - 318	1.5e-33	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41490 AT3G57220
fragaria_vesca	FvH4_6g24760 FvH4_6g24760 FvH4_6g24760 FvH4_6g24760 FvH4_6g24760
malus_domestica	MD12G1086200.v1.1 MD14G1080600.v1.1
prunus_persica	Prupe.1G032300_v2.0.a1 Prupe.7G050100_v2.0.a1
pyrus_communis	pycom12g07300 pycom14g06990
rosa_chinensis	RchiOBHm_Chr3g0484361 RchiOBHm_Chr3g0484421 RchiOBHm_Chr3g0484511
rosa_laevigata	RLG00000023230
rosa_multiflora	Rmu_sc0002910.1_g000009
rosa_roxburghii	Rroxscaffold_6G00397750
rosa_rugosa	Rorug03G0211000 Rorug03G0211100 Rorug03G0211200
rosa_samantha	Rh3AG260100 Rh3AG260600 Rh3AG261100 Rh3AG261800 Rh3BG296800 Rh3CG294300 Rh3DG290400
rosa_wichuraiana	Rw3G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	6 cut(s)	453, 492, 501, 525, 675, 706
AcoI	YGGCCR	2 cut(s)	720, 875
AcsI	RAATTY	2 cut(s)	1000, 1021
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	4 cut(s)	271, 493, 729, 954
AgsI	TTSAA	2 cut(s)	787, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	4 cut(s)	664, 745, 826, 858
AluI	AGCT	4 cut(s)	664, 745, 826, 858
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	343, 460
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	6 cut(s)	273, 295, 495, 720, 875, 945
ApeKI	GCWGC	2 cut(s)	648, 742
ApoI	RAATTY	2 cut(s)	1000, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	274, 496
AsuC2I	CCSGG	1 cut(s)	956
AsuHPI	GGTGA	3 cut(s)	373, 469, 1046
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	780, 828
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	660, 754
BccI	CCATC	7 cut(s)	173, 205, 299, 341, 479, 611, 995
BceAI	ACGGC	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	956
BcoDI	GTCTC	2 cut(s)	343, 460
BfmI	CTRYAG	2 cut(s)	646, 754
BglI	GCCNNNNNGGC	1 cut(s)	423
BisI	GCNGC	4 cut(s)	415, 649, 707, 743
BlsI	GCNGC	4 cut(s)	416, 650, 708, 744
Bme1390I	CCNGG	1 cut(s)	956
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	274, 496
BmiI	GGNNCC	2 cut(s)	511, 737
BmrFI	CCNGG	1 cut(s)	956
BmsI	GCATC	1 cut(s)	892
BplI	GAGNNNNNCTC	2 cut(s)	988, 1020
BpmI	CTGGAG	3 cut(s)	541, 581, 650
BpuEI	CTTGAG	2 cut(s)	503, 812
BpuMI	CCSGG	1 cut(s)	956
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	387, 878
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 272, 293, 302, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	271, 493, 729, 954
Bse1I	ACTGG	2 cut(s)	598, 939
BseDI	CCNNGG	2 cut(s)	387, 878
BseGI	GGATG	4 cut(s)	165, 206, 465, 987
BseLI	CCNNNNNNNGG	4 cut(s)	271, 493, 729, 954
BseNI	ACTGG	2 cut(s)	598, 939
BseRI	GAGGAG	7 cut(s)	37, 97, 100, 103, 106, 305, 476
BseSI	GKGCMC	1 cut(s)	434
BseX3I	CGGCCG	1 cut(s)	875
BseXI	GCAGC	2 cut(s)	660, 754
Bsh1236I	CGCG	6 cut(s)	453, 492, 501, 525, 675, 706
Bsh1285I	CGRYCG	1 cut(s)	878
BshFI	GGCC	6 cut(s)	275, 297, 497, 722, 877, 947
BsiEI	CGRYCG	1 cut(s)	878
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	730, 955
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	4 cut(s)	271, 493, 729, 954
BsmAI	GTCTC	2 cut(s)	343, 460
BsmBI	CGTCTC	2 cut(s)	343, 460
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	6 cut(s)	275, 297, 497, 722, 877, 947
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	3 cut(s)	434, 780, 828
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp143I	GATC	1 cut(s)	514
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	6 cut(s)	275, 297, 497, 722, 877, 947
BspFNI	CGCG	6 cut(s)	453, 492, 501, 525, 675, 706
BspLI	GGNNCC	2 cut(s)	511, 737
BspMAI	CTGCAG	1 cut(s)	650
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	2 cut(s)	598, 939
BssECI	CCNNGG	2 cut(s)	387, 878
BssMI	GATC	1 cut(s)	514
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	618
BstAUI	TGTACA	1 cut(s)	1016
BstC8I	GCNNGC	2 cut(s)	499, 552
BstDEI	CTNAG	1 cut(s)	859
BstDSI	CCRYGG	1 cut(s)	387
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstF5I	GGATG	4 cut(s)	165, 206, 465, 987
BstFNI	CGCG	6 cut(s)	453, 492, 501, 525, 675, 706
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	2 cut(s)	343, 460
BstMBI	GATC	1 cut(s)	514
BstMCI	CGRYCG	1 cut(s)	878
BstMWI	GCNNNNNNNGC	4 cut(s)	423, 498, 507, 739
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	954
BstSFI	CTRYAG	2 cut(s)	646, 754
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	6 cut(s)	453, 492, 501, 525, 675, 706
BstV1I	GCAGC	2 cut(s)	660, 754
BstZI	CGGCCG	1 cut(s)	875
BsuRI	GGCC	6 cut(s)	275, 297, 497, 722, 877, 947
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	4 cut(s)	165, 206, 465, 987
BtsIMutI	CAGTG	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	499, 552
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	2 cut(s)	274, 496
CseI	GACGC	7 cut(s)	442, 490, 514, 550, 640, 664, 722
Csp6I	GTAC	1 cut(s)	1017
CviAII	CATG	4 cut(s)	125, 388, 427, 724
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	1 cut(s)	859
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EaeI	YGGCCR	2 cut(s)	720, 875
EagI	CGGCCG	1 cut(s)	875
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EciI	GGCGGA	3 cut(s)	331, 401, 566
Ecl136II	GAGCTC	1 cut(s)	826
EclXI	CGGCCG	1 cut(s)	875
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	780, 828
Eco52I	CGGCCG	1 cut(s)	875
Eco53kI	GAGCTC	1 cut(s)	826
Eco88I	CYCGRG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	826
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	2 cut(s)	780, 828
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	2 cut(s)	343, 460
FaeI	CATG	4 cut(s)	128, 391, 430, 727
FaiI	YATR	7 cut(s)	126, 389, 428, 530, 611, 725, 768
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	4 cut(s)	124, 387, 426, 723
FauI	CCCGC	5 cut(s)	458, 506, 680, 702, 747
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	4 cut(s)	415, 649, 707, 743
FokI	GGATG	4 cut(s)	152, 193, 452, 974
FriOI	GRGCYC	2 cut(s)	780, 828
Fsp4HI	GCNGC	4 cut(s)	415, 649, 707, 743
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	4 cut(s)	415, 649, 707, 743
GsuI	CTGGAG	3 cut(s)	541, 581, 650
HaeIII	GGCC	6 cut(s)	275, 297, 497, 722, 877, 947
HapII	CCGG	2 cut(s)	730, 955
HgaI	GACGC	7 cut(s)	442, 490, 514, 550, 640, 664, 722
HhaI	GCGC	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	4 cut(s)	128, 391, 430, 727
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	3 cut(s)	505, 622, 679
HindII	GTYRAC	3 cut(s)	505, 622, 679
HinfI	GANTC	3 cut(s)	287, 865, 871
HpaII	CCGG	2 cut(s)	730, 955
HphI	GGTGA	3 cut(s)	373, 469, 1046
Hpy166II	GTNNAC	4 cut(s)	505, 622, 679, 1017
Hpy188I	TCNGA	5 cut(s)	259, 460, 514, 870, 888
Hpy8I	GTNNAC	4 cut(s)	505, 622, 679, 1017
Hpy99I	CGWCG	5 cut(s)	425, 540, 620, 656, 680
HpyAV	CCTTC	5 cut(s)	52, 141, 490, 814, 895
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	2 cut(s)	4, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	423, 498, 507, 739
HpyF3I	CTNAG	1 cut(s)	859
HpySE526I	ACGT	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	4 cut(s)	128, 391, 430, 727
HspAI	GCGC	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	3 cut(s)	515, 669, 823
LpnPI	CCDG	9 cut(s)	556, 571, 611, 658, 680, 743, 952, 968, 1017
Lsp1109I	GCAGC	2 cut(s)	660, 754
LweI	GCATC	1 cut(s)	892
MaeII	ACGT	1 cut(s)	618
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	3 cut(s)	298, 466, 975
MhlI	GDGCHC	3 cut(s)	434, 780, 828
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	6 cut(s)	95, 769, 787, 979, 1000, 1021
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	282, 483
Mox20I	TGGCCA	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	1 cut(s)	932
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	745
MspI	CCGG	2 cut(s)	730, 955
MspR9I	CCNGG	1 cut(s)	956
MvnI	CGCG	6 cut(s)	453, 492, 501, 525, 675, 706
MwoI	GCNNNNNNNGC	4 cut(s)	423, 498, 507, 739
NciI	CCSGG	1 cut(s)	956
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	4 cut(s)	128, 391, 430, 727
NlaIV	GGNNCC	2 cut(s)	511, 737
NmeAIII	GCCGAG	1 cut(s)	903
NspI	RCATGY	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	4 cut(s)	450, 558, 612, 684
PfeI	GAWTC	2 cut(s)	865, 871
PfoI	TCCNGGA	1 cut(s)	954
PkrI	GCNGC	4 cut(s)	416, 650, 708, 744
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	828
PspN4I	GGNNCC	2 cut(s)	511, 737
PspPI	GGNCC	2 cut(s)	274, 496
PstI	CTGCAG	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	828
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	932
SatI	GCNGC	4 cut(s)	415, 649, 707, 743
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	2 cut(s)	274, 496
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	3 cut(s)	434, 780, 828
SfaNI	GCATC	1 cut(s)	892
SfcI	CTRYAG	2 cut(s)	646, 754
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	518, 827
SmoI	CTYRAG	2 cut(s)	518, 827
Sse9I	AATT	6 cut(s)	95, 769, 787, 979, 1000, 1021
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	1 cut(s)	954
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	6 cut(s)	285, 300, 654, 678, 687, 774
TasI	AATT	6 cut(s)	95, 769, 787, 979, 1000, 1021
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	2 cut(s)	417, 709
TfiI	GAWTC	2 cut(s)	865, 871
Tru1I	TTAA	1 cut(s)	932
Tru9I	TTAA	1 cut(s)	932
TscAI	CASTG	1 cut(s)	946
TseI	GCWGC	2 cut(s)	648, 742
TspRI	CASTG	1 cut(s)	946
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	2 cut(s)	1000, 1021
XceI	RCATGY	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.