RchiOBHm_Chr3g0484421

UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
30789051 .. 30794442
5392 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44913

Sequence Viewer

Length: 1311 bp
ATGGAGACACCACCAAAATCCGGCATAGCAGAGATGCATATCACTAATACCTGGGTCCCAAACAAGATTGAGCAGGAGCTCAGAAATTCGATTCTGATCAATGCCGCCCTCAGCCTCGCGGCGTTCTTCGTCACCGTTAAGATGATCCCTGTGGCTTCTAGATACGTTCTCAGGCGCAATCTGTTTGGCTACGATATTAACAAAAAGGGTACTCCTCAGGGTACTATTAAAGTGCCAGAGTCGTTGGGCATTGTTGTTGGAATTGTCTTCTTGGTCTTTTCGATATTATTTCAGTATTTCAACTTCACTGCAGATTCAAATTGGCTTGTTGAGTACAATGCAGCATTAGCCTCCATATGCTTTATGGTATTGCTGGGATTTGTAGATGATGTTCTTGATGGAGAGTGTGAGTATCCGGAAATTAATACTGCCATCAATTGCAGCTTTACCTCTGCTGATGGCTTATGCTGGACATACAACTATTATCATACCAAAGCCTCTTGTTCCATATGTTGGGCTACAGGTCTGGGATCTAGGTTCGCCATAGTGAAGCCCAAGGAATCAGGATGGATGTATAAACTATATATGGGACTTTTGGCGGTTTTCTGTACAAACTCAATTAATATTCATGCTGGATTGAATGGTCTTGAAGTTGGCCAGACAGTTGTAATTGCATCTGCTATTTTAATACACAATATCATGCAAATTGGAGCATCTGTAGATTTTGAGTACAAGATGGCACACGCATTCTCTATATATCTTGCCCAACCCTTACTGGCAACCTCCTTGGCATTGTTCTCTTACAACTGGTATCCTTCTTCAGCTTTTGTTGGAGATACTTACACATACTTTGCTGGGATGACTATGGCTGTAGTTGGGATTCTTGGCCATTTTAGTTATGGCTTCCTCCATAGACAATTCTCATACTCAGAGAATTTTCTGTATACATGGAACTTACATTCTTGCATGTGTAGAAGAATCTGGTGGAATTTCCTTGTTTTTCATTGCGCTGTATTTGGAACCTATGTTGAAACGCTCCTGATTTTCTTTCTCCCTCAAGTCTTGAACTTTCTCTTGTCACTGCCCCAGCTTGCTGGGATCATTCCATGTCCGCGCCATCGTCTCCCAAGGTTCGATCCTGAAACTGGACTGCTGACTGGGACAAATGATGGGACACTTGTAAACTTGTTCCTAAGACAATTTGGCAGGATGACAGAGAAGAAACTTTGTGTTTATCTTCTCGTTTTCCAGGCTCTAGCATGCTGCTTCTGTTTCCTGTTGAGATACTTCCTTGCTGGTTGGTATAAATGA

Protein Analysis

436

Amino Acids

49.3

Weight (kDa)

7.85

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 115 - 296 5.7e-17 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 513
AccI GTMKAC 1 cut(s) 944
AccII CGCG 2 cut(s) 119, 1114
AccIII TCCGGA 1 cut(s) 415
AciI CCGC 4 cut(s) 105, 119, 599, 1112
AclWI GGATC 4 cut(s) 139, 538, 1106, 1130
AcoI YGGCCR 2 cut(s) 655, 886
AcsI RAATTY 3 cut(s) 85, 934, 988
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 5 cut(s) 211, 223, 335, 610, 731
AfiI CCNNNNNNNGG 3 cut(s) 20, 513, 1145
AgsI TTSAA 6 cut(s) 301, 318, 640, 650, 1031, 1066
AjnI CCWGG 2 cut(s) 50, 1248
AluBI AGCT 4 cut(s) 79, 444, 824, 1090
AluI AGCT 4 cut(s) 79, 444, 824, 1090
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 1127
AlwI GGATC 4 cut(s) 139, 538, 1106, 1130
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 2 cut(s) 655, 886
ApeKI GCWGC 3 cut(s) 341, 441, 1263
ApoI RAATTY 3 cut(s) 85, 934, 988
AseI ATTAAT 2 cut(s) 423, 621
AspLEI GCGC 3 cut(s) 177, 1010, 1116
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 216
BalI TGGCCA 2 cut(s) 657, 888
BanII GRGCYC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 353, 453, 1250
BccI CCATC 7 cut(s) 392, 440, 452, 561, 730, 1125, 1163
BciT130I CCWGG 2 cut(s) 52, 1250
BciVI GTATCC 2 cut(s) 423, 822
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 1127
BfaI CTAG 3 cut(s) 159, 534, 1256
BfmI CTRYAG 4 cut(s) 309, 519, 717, 870
BfuI GTATCC 2 cut(s) 423, 822
BisI GCNGC 5 cut(s) 105, 120, 342, 442, 1264
BlsI GCNGC 5 cut(s) 106, 121, 343, 443, 1265
Bme1390I CCNGG 2 cut(s) 52, 1250
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 56, 57, 1021
BmrFI CCNGG 2 cut(s) 52, 1250
BmrI ACTGGG 1 cut(s) 1167
BmsI GCATC 3 cut(s) 24, 683, 722
BmuI ACTGGG 1 cut(s) 1167
BpiI GAAGAC 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 1041
BsaBI GATNNNNATC 2 cut(s) 38, 95
BsaJI CCNNGG 4 cut(s) 51, 555, 786, 1127
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 513, 1145
Bse1I ACTGG 4 cut(s) 780, 812, 1150, 1162
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 1003
Bse8I GATNNNNATC 2 cut(s) 38, 95
BseAI TCCGGA 1 cut(s) 415
BseBI CCWGG 2 cut(s) 52, 1250
BseDI CCNNGG 4 cut(s) 51, 555, 786, 1127
BseGI GGATG 4 cut(s) 572, 576, 864, 1215
BseJI GATNNNNATC 2 cut(s) 38, 95
BseLI CCNNNNNNNGG 3 cut(s) 20, 513, 1145
BseMI GCAATG 1 cut(s) 1003
BseMII CTCAG 5 cut(s) 94, 124, 184, 230, 942
BseNI ACTGG 4 cut(s) 780, 812, 1150, 1162
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 353, 453, 1250
BseYI CCCAGC 4 cut(s) 373, 854, 1086, 1094
Bsh1236I CGCG 2 cut(s) 119, 1114
BshFI GGCC 2 cut(s) 657, 888
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 21, 416
BslFI GGGAC 4 cut(s) 41, 603, 1174, 1186
BslI CCNNNNNNNGG 3 cut(s) 20, 513, 1145
BsmAI GTCTC 1 cut(s) 1127
BsmBI CGTCTC 1 cut(s) 1127
BsmFI GGGAC 4 cut(s) 41, 603, 1174, 1186
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 2 cut(s) 657, 888
Bsp1286I GDGCHC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 415
Bsp1407I TGTACA 1 cut(s) 608
Bsp143I GATC 5 cut(s) 96, 144, 530, 1098, 1135
BspACI CCGC 4 cut(s) 105, 119, 599, 1112
BspANI GGCC 2 cut(s) 657, 888
BspCNI CTCAG 5 cut(s) 93, 123, 183, 229, 941
BspEI TCCGGA 1 cut(s) 415
BspFNI CGCG 2 cut(s) 119, 1114
BspLI GGNNCC 3 cut(s) 56, 57, 1021
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 4 cut(s) 139, 538, 1106, 1130
BsrDI GCAATG 1 cut(s) 1003
BsrGI TGTACA 1 cut(s) 608
BsrI ACTGG 4 cut(s) 780, 812, 1150, 1162
BssECI CCNNGG 4 cut(s) 51, 555, 786, 1127
BssMI GATC 5 cut(s) 96, 144, 530, 1098, 1135
BssNAI GTATAC 1 cut(s) 945
BssT1I CCWWGG 3 cut(s) 555, 786, 1127
Bst1107I GTATAC 1 cut(s) 945
Bst2UI CCWGG 2 cut(s) 52, 1250
Bst4CI ACNGT 2 cut(s) 136, 664
BstAUI TGTACA 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 1092, 1261
BstDEI CTNAG 6 cut(s) 80, 110, 170, 216, 928, 1193
BstF5I GGATG 4 cut(s) 572, 576, 864, 1215
BstFNI CGCG 2 cut(s) 119, 1114
BstHHI GCGC 3 cut(s) 177, 1010, 1116
BstKTI GATC 5 cut(s) 99, 147, 533, 1101, 1138
BstMAI GTCTC 1 cut(s) 1127
BstMBI GATC 5 cut(s) 96, 144, 530, 1098, 1135
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 2 cut(s) 52, 1250
BstNSI RCATGY 2 cut(s) 970, 1263
BstSCI CCNGG 2 cut(s) 50, 1248
BstSFI CTRYAG 4 cut(s) 309, 519, 717, 870
BstUI CGCG 2 cut(s) 119, 1114
BstV1I GCAGC 3 cut(s) 353, 453, 1250
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 530
BstXI CCANNNNNNTGG 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 530
BstZ17I GTATAC 1 cut(s) 945
Bsu36I CCTNAGG 1 cut(s) 216
BsuI GTATCC 2 cut(s) 423, 822
BsuRI GGCC 2 cut(s) 657, 888
BtsCI GGATG 4 cut(s) 572, 576, 864, 1215
BtsI GCAGTG 2 cut(s) 306, 1079
BtsIMutI CAGTG 2 cut(s) 306, 1079
Cac8I GCNNGC 2 cut(s) 1092, 1261
CfoI GCGC 3 cut(s) 177, 1010, 1116
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 5 cut(s) 210, 222, 334, 609, 730
CviAII CATG 6 cut(s) 629, 700, 948, 967, 1107, 1260
CviQI GTAC 5 cut(s) 210, 222, 334, 609, 730
DdeI CTNAG 6 cut(s) 80, 110, 170, 216, 928, 1193
DpnI GATC 5 cut(s) 98, 146, 532, 1100, 1137
DpnII GATC 5 cut(s) 96, 144, 530, 1098, 1135
EaeI YGGCCR 2 cut(s) 655, 886
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 3 cut(s) 555, 786, 1127
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 804
Eco81I CCTNAGG 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 50, 1248
EcoT14I CCWWGG 3 cut(s) 555, 786, 1127
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 3 cut(s) 555, 786, 1127
Esp3I CGTCTC 1 cut(s) 1127
FaeI CATG 6 cut(s) 632, 703, 951, 970, 1110, 1263
FaqI GGGAC 4 cut(s) 41, 603, 1174, 1186
FatI CATG 6 cut(s) 628, 699, 947, 966, 1106, 1259
FauNDI CATATG 2 cut(s) 356, 509
FbaI TGATCA 1 cut(s) 96
FblI GTMKAC 1 cut(s) 944
Fnu4HI GCNGC 5 cut(s) 105, 120, 342, 442, 1264
FokI GGATG 4 cut(s) 579, 583, 871, 1222
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 5 cut(s) 105, 120, 342, 442, 1264
FspBI CTAG 3 cut(s) 159, 534, 1256
GlaI GCGC 3 cut(s) 176, 1009, 1115
GluI GCNGC 5 cut(s) 105, 120, 342, 442, 1264
GsaI CCCAGC 4 cut(s) 377, 858, 1090, 1098
HaeIII GGCC 2 cut(s) 657, 888
HapII CCGG 2 cut(s) 21, 416
HhaI GCGC 3 cut(s) 177, 1010, 1116
Hin1II CATG 6 cut(s) 632, 703, 951, 970, 1110, 1263
Hin6I GCGC 3 cut(s) 175, 1008, 1114
HinP1I GCGC 3 cut(s) 175, 1008, 1114
HinfI GANTC 6 cut(s) 91, 239, 314, 560, 880, 978
HpaII CCGG 2 cut(s) 21, 416
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 945, 1183
Hpy188I TCNGA 3 cut(s) 83, 96, 931
Hpy188III TCNNGA 8 cut(s) 159, 395, 416, 564, 647, 1039, 1063, 1139
Hpy8I GTNNAC 2 cut(s) 945, 1183
HpyAV CCTTC 1 cut(s) 825
HpyCH4III ACNGT 2 cut(s) 136, 664
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 7 cut(s) 37, 311, 341, 441, 674, 703, 966
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 6 cut(s) 80, 110, 170, 216, 928, 1193
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 6 cut(s) 632, 703, 951, 970, 1110, 1263
HspAI GCGC 3 cut(s) 175, 1008, 1114
KflI GGGWCCC 1 cut(s) 55
Kpn2I TCCGGA 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 5 cut(s) 96, 144, 530, 1098, 1135
LmnI GCTCC 3 cut(s) 76, 710, 1041
Lsp1109I GCAGC 3 cut(s) 353, 453, 1250
LweI GCATC 3 cut(s) 24, 683, 722
MaeI CTAG 3 cut(s) 159, 534, 1256
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 130, 1077
MalI GATC 5 cut(s) 98, 146, 532, 1100, 1137
MboI GATC 5 cut(s) 96, 144, 530, 1098, 1135
MboII GAAGA 6 cut(s) 118, 259, 810, 987, 1229, 1231
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 2 cut(s) 657, 888
MluNI TGGCCA 2 cut(s) 657, 888
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 238, 811
MnlI CCTC 9 cut(s) 119, 125, 225, 361, 460, 508, 793, 917, 1065
Mox20I TGGCCA 2 cut(s) 657, 888
Mph1103I ATGCAT 1 cut(s) 39
MroI TCCGGA 1 cut(s) 415
MscI TGGCCA 2 cut(s) 657, 888
MseI TTAA 6 cut(s) 138, 198, 228, 423, 621, 686
Msp20I TGGCCA 2 cut(s) 657, 888
MspI CCGG 2 cut(s) 21, 416
MspR9I CCNGG 2 cut(s) 52, 1250
MunI CAATTG 1 cut(s) 436
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 2 cut(s) 52, 1250
MvnI CGCG 2 cut(s) 119, 1114
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeI CATATG 2 cut(s) 356, 509
NdeII GATC 5 cut(s) 96, 144, 530, 1098, 1135
NlaIII CATG 6 cut(s) 632, 703, 951, 970, 1110, 1263
NlaIV GGNNCC 3 cut(s) 56, 57, 1021
NmuCI GTSAC 2 cut(s) 130, 1077
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 2 cut(s) 970, 1263
PaeI GCATGC 1 cut(s) 1263
PctI GAATGC 1 cut(s) 746
PfeI GAWTC 5 cut(s) 91, 314, 560, 880, 978
PflMI CCANNNNNTGG 1 cut(s) 513
PkrI GCNGC 5 cut(s) 106, 121, 343, 443, 1265
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 55
PshBI ATTAAT 2 cut(s) 423, 621
Psp124BI GAGCTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 50, 1248
PspFI CCCAGC 4 cut(s) 373, 854, 1086, 1094
PspGI CCWGG 2 cut(s) 50, 1248
PspN4I GGNNCC 3 cut(s) 56, 57, 1021
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 5 cut(s) 211, 223, 335, 610, 731
RsaNI GTAC 5 cut(s) 210, 222, 334, 609, 730
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 6 cut(s) 138, 198, 228, 423, 621, 686
SatI GCNGC 5 cut(s) 105, 120, 342, 442, 1264
Sau3AI GATC 5 cut(s) 96, 144, 530, 1098, 1135
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 52, 1250
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 3 cut(s) 24, 683, 722
SfcI CTRYAG 4 cut(s) 309, 519, 717, 870
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 1056
SmoI CTYRAG 1 cut(s) 1056
SphI GCATGC 1 cut(s) 1263
SsiI CCGC 4 cut(s) 105, 119, 599, 1112
SspI AATATT 1 cut(s) 625
SspMI CTAG 3 cut(s) 159, 534, 1256
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 50, 1248
StyI CCWWGG 3 cut(s) 555, 786, 1127
TaaI ACNGT 2 cut(s) 136, 664
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 89, 281, 1134
TatI WGTACW 3 cut(s) 333, 608, 729
TauI GCSGC 2 cut(s) 107, 122
TfiI GAWTC 5 cut(s) 91, 314, 560, 880, 978
Tru1I TTAA 6 cut(s) 138, 198, 228, 423, 621, 686
Tru9I TTAA 6 cut(s) 138, 198, 228, 423, 621, 686
TscAI CASTG 2 cut(s) 313, 1086
TseFI GTSAC 2 cut(s) 130, 1077
TseI GCWGC 3 cut(s) 341, 441, 1263
Tsp45I GTSAC 2 cut(s) 130, 1077
TspDTI ATGAA 2 cut(s) 617, 992
TspRI CASTG 2 cut(s) 313, 1086
Van91I CCANNNNNTGG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 55
VspI ATTAAT 2 cut(s) 423, 621
XapI RAATTY 3 cut(s) 85, 934, 988
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 2 cut(s) 970, 1263
XcmI CCANNNNNNNNNTGG 2 cut(s) 361, 896
XmiI GTMKAC 1 cut(s) 944
XspI CTAG 3 cut(s) 159, 534, 1256
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.