AT3G57220

Glycosyl transferase family 4

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21174395 .. 21177194
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57220.1

Sequence Viewer

Length: 1281 bp
ATGACTGCTCGTAAGAGAACTCCTTCAGTGTCCAATTCGGAGAAACTAGCTCTACCTGAACCTGCATCTTCCCCGACGGTTCAGAAGACCTCTGTTTCCGGAGAGGATTTCCAGCTCGCGCCGCCGAAATTGGGCGTGATTTTCGTGATCTCTTCGCTTCTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGCTCAAGCGTCCGATCCTCATTAACGCTGGGCTTAGCTTGGTTGGATTCTTTGTCACACTCAAGTTGATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATCAACAAAAGAGGCACTCCTCAAGGAGAAGTTAGAGTGCCTGAGTCATTGGGAATTGTTGTCGGTATTGTCTTCTTGATAGTGGCGATTGTATTTCAGTTCTTTAATTTCACTGAAGATTCGGTGTGGCTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATATTGCTTGGATTTGTAGATGACGTCCTTGATGTGCCTTGGAGAGTGAAACTTCTCTTGCCATCTTTTGCAACCCTTCCACTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACCTTTAGTTTCTTATATTGGCTTGGAAGTGTTTGATCTAGGACGTATATATAAGTTATATATGGCGCTACTGGCTGTCTTTTGCACAAATTCTATTAACATTCACGCTGGTTTGAATGGCCTTGAAATCGGTCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACGTTATGCAAATCGGAGCATCTGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCAGCCATTGATGGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTTTGTTGGAGACACTTACACAGTCTTTGCTGGAATGACTATGGCAGTTGTTGGCATTCTCGGTCACTTCAGTGAAACCCTGTTAATCTTTTTTCTTCCTCAAGTGTTGAACTTTTTACTGTCACTTCCGCAGCTTGCTGGCATTGTCAAATGTCCACGACATCGTCTCCCCAAGTATGATCCTGCTACGGGACTGTTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACTTGAGGATTTTTGGTAGGAAAACAGAAAAGTCTCTATGTATTCATCTTCTTGTTTTCCAGGCTCTTGCTTGCGCATTTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAA

Protein Analysis

426

Amino Acids

47.17

Weight (kDa)

8.8

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 160 - 330 1.2e-26 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
Acc16I TGCGCA 1 cut(s) 1234
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 912
AccI GTMKAC 1 cut(s) 1158
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 98
AciI CCGC 2 cut(s) 122, 1055
AclI AACGTT 1 cut(s) 798
AclWI GGATC 2 cut(s) 220, 1100
AcsI RAATTY 1 cut(s) 715
AcuI CTGAAG 3 cut(s) 9, 465, 979
AcyI GRCGYC 2 cut(s) 485, 525
AfaI GTAC 2 cut(s) 914, 1274
AfiI CCNNNNNNNGG 3 cut(s) 131, 909, 1115
AgsI TTSAA 3 cut(s) 742, 752, 1036
AjnI CCWGG 1 cut(s) 1218
AleI CACNNNNGTG 1 cut(s) 996
AluBI AGCT 9 cut(s) 50, 115, 214, 249, 290, 779, 842, 1060, 1265
AluI AGCT 9 cut(s) 50, 115, 214, 249, 290, 779, 842, 1060, 1265
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 3 cut(s) 930, 1097, 1197
AlwI GGATC 2 cut(s) 220, 1100
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 1 cut(s) 745
ApeKI GCWGC 5 cut(s) 290, 476, 776, 779, 1057
ApoI RAATTY 1 cut(s) 715
Asp700I GAANNNNTTC 1 cut(s) 22
Asp718I GGTACC 1 cut(s) 912
AspLEI GCGC 3 cut(s) 121, 694, 1235
BanI GGYRCC 1 cut(s) 912
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 1148
BbsI GAAGAC 2 cut(s) 92, 394
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 5 cut(s) 277, 488, 766, 788, 1069
BccI CCATC 4 cut(s) 571, 583, 871, 1133
BciT130I CCWGG 1 cut(s) 1220
BcoDI GTCTC 3 cut(s) 930, 1097, 1197
BfaI CTAG 4 cut(s) 47, 294, 665, 1262
BfmI CTRYAG 2 cut(s) 285, 921
BfoI RGCGCY 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 6 cut(s) 122, 291, 477, 777, 780, 1058
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 6 cut(s) 123, 292, 478, 778, 781, 1059
Bme1390I CCNGG 1 cut(s) 1220
BmiI GGNNCC 1 cut(s) 914
BmrFI CCNGG 1 cut(s) 1220
BmsI GCATC 2 cut(s) 74, 824
BpiI GAAGAC 2 cut(s) 92, 394
Bpu10I CCTNAGC 1 cut(s) 1250
Bpu1102I GCTNAGC 1 cut(s) 245
BpuEI CTTGAG 5 cut(s) 200, 257, 336, 1011, 1183
BsaHI GRCGYC 2 cut(s) 485, 525
BsaJI CCNNGG 2 cut(s) 539, 888
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 4 cut(s) 804, 834, 1077, 1107
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 909, 1115
Bse1I ACTGG 2 cut(s) 486, 702
Bse3DI GCAATG 1 cut(s) 900
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 1220
BseDI CCNNGG 2 cut(s) 539, 888
BseGI GGATG 1 cut(s) 884
BseLI CCNNNNNNNGG 3 cut(s) 131, 909, 1115
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 4 cut(s) 296, 363, 819, 881
BseNI ACTGG 2 cut(s) 486, 702
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 5 cut(s) 277, 488, 766, 788, 1069
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 747
BshNI GGYRCC 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 1131, 1156
BslI CCNNNNNNNGG 3 cut(s) 131, 909, 1115
BsmAI GTCTC 3 cut(s) 930, 1097, 1197
BsmBI CGTCTC 1 cut(s) 1097
BsmFI GGGAC 2 cut(s) 1131, 1156
BsmI GAATGC 1 cut(s) 981
BsnI GGCC 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 98
Bsp143I GATC 4 cut(s) 147, 225, 661, 1105
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 2 cut(s) 122, 1055
BspANI GGCC 1 cut(s) 747
BspCNI CTCAG 4 cut(s) 297, 364, 820, 880
BspEI TCCGGA 1 cut(s) 98
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 914
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 220, 1100
BspT107I GGYRCC 1 cut(s) 912
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 2 cut(s) 486, 702
BssECI CCNNGG 2 cut(s) 539, 888
BssMI GATC 4 cut(s) 147, 225, 661, 1105
BssNI GRCGYC 2 cut(s) 485, 525
BssSI CACGAG 1 cut(s) 1148
BssT1I CCWWGG 2 cut(s) 539, 888
Bst2BI CACGAG 1 cut(s) 1148
Bst2UI CCWGG 1 cut(s) 1220
Bst4CI ACNGT 6 cut(s) 79, 585, 766, 949, 1047, 1122
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 2 cut(s) 485, 525
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 5 cut(s) 117, 900, 1062, 1066, 1231
BstDEI CTNAG 6 cut(s) 245, 305, 372, 828, 867, 1250
BstF5I GGATG 1 cut(s) 884
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 695
BstHHI GCGC 3 cut(s) 121, 694, 1235
BstKTI GATC 4 cut(s) 150, 228, 664, 1108
BstMAI GTCTC 3 cut(s) 930, 1097, 1197
BstMBI GATC 4 cut(s) 147, 225, 661, 1105
BstMWI GCNNNNNNNGC 4 cut(s) 121, 482, 698, 899
BstNI CCWGG 1 cut(s) 1220
BstSCI CCNGG 1 cut(s) 1218
BstSFI CTRYAG 2 cut(s) 285, 921
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 5 cut(s) 277, 488, 766, 788, 1069
BstV2I GAAGAC 2 cut(s) 92, 394
BsuRI GGCC 1 cut(s) 747
BtsCI GGATG 1 cut(s) 884
BtsIMutI CAGTG 5 cut(s) 33, 441, 479, 581, 1003
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 5 cut(s) 117, 900, 1062, 1066, 1231
CciI TCATGA 1 cut(s) 498
CfoI GCGC 3 cut(s) 121, 694, 1235
CseI GACGC 2 cut(s) 209, 474
Csp6I GTAC 2 cut(s) 913, 1273
CviAII CATG 3 cut(s) 499, 845, 1246
CviQI GTAC 2 cut(s) 913, 1273
DdeI CTNAG 6 cut(s) 245, 305, 372, 828, 867, 1250
DpnI GATC 4 cut(s) 149, 227, 663, 1107
DpnII GATC 4 cut(s) 147, 225, 661, 1105
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 539, 888
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 3 cut(s) 9, 465, 979
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 1218
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 539, 888
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 539, 888
Esp3I CGTCTC 1 cut(s) 1097
FaeI CATG 3 cut(s) 502, 848, 1249
FaqI GGGAC 2 cut(s) 1131, 1156
FatI CATG 3 cut(s) 498, 844, 1245
FblI GTMKAC 1 cut(s) 1158
Fnu4HI GCNGC 6 cut(s) 122, 291, 477, 777, 780, 1058
FokI GGATG 1 cut(s) 871
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 6 cut(s) 122, 291, 477, 777, 780, 1058
FspBI CTAG 4 cut(s) 47, 294, 665, 1262
FspI TGCGCA 1 cut(s) 1234
GlaI GCGC 3 cut(s) 120, 693, 1234
GluI GCNGC 6 cut(s) 122, 291, 477, 777, 780, 1058
GsaI CCCAGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 695
HaeIII GGCC 1 cut(s) 747
HapII CCGG 1 cut(s) 99
HgaI GACGC 2 cut(s) 209, 474
HhaI GCGC 3 cut(s) 121, 694, 1235
Hin1I GRCGYC 2 cut(s) 485, 525
Hin1II CATG 3 cut(s) 502, 848, 1249
Hin6I GCGC 3 cut(s) 119, 692, 1233
HinP1I GCGC 3 cut(s) 119, 692, 1233
HincII GTYRAC 2 cut(s) 205, 1125
HindII GTYRAC 2 cut(s) 205, 1125
HinfI GANTC 4 cut(s) 258, 280, 374, 449
HpaI GTTAAC 1 cut(s) 1125
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 5 cut(s) 205, 1082, 1125, 1153, 1159
Hpy188I TCNGA 6 cut(s) 40, 84, 225, 306, 789, 812
Hpy188III TCNNGA 5 cut(s) 99, 145, 406, 499, 1150
Hpy8I GTNNAC 5 cut(s) 205, 1082, 1125, 1153, 1159
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 5 cut(s) 33, 191, 587, 859, 927
HpyCH4III ACNGT 6 cut(s) 79, 585, 766, 949, 1047, 1122
HpyCH4IV ACGT 5 cut(s) 300, 525, 670, 798, 1155
HpyCH4V TGCA 7 cut(s) 65, 476, 572, 711, 776, 805, 923
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 482, 698, 899
HpyF3I CTNAG 6 cut(s) 245, 305, 372, 828, 867, 1250
HpySE526I ACGT 5 cut(s) 300, 525, 670, 798, 1155
Hsp92I GRCGYC 2 cut(s) 485, 525
Hsp92II CATG 3 cut(s) 502, 848, 1249
HspAI GCGC 3 cut(s) 119, 692, 1233
Kpn2I TCCGGA 1 cut(s) 98
KpnI GGTACC 1 cut(s) 916
KspAI GTTAAC 1 cut(s) 1125
Kzo9I GATC 4 cut(s) 147, 225, 661, 1105
LmnI GCTCC 1 cut(s) 812
Lsp1109I GCAGC 5 cut(s) 277, 488, 766, 788, 1069
LweI GCATC 2 cut(s) 74, 824
MaeI CTAG 4 cut(s) 47, 294, 665, 1262
MaeII ACGT 5 cut(s) 300, 525, 670, 798, 1155
MaeIII GTNAC 3 cut(s) 265, 989, 1047
MalI GATC 4 cut(s) 149, 227, 663, 1107
MboI GATC 4 cut(s) 147, 225, 661, 1105
MboII GAAGA 7 cut(s) 60, 97, 144, 394, 458, 1013, 1199
MfeI CAATTG 1 cut(s) 907
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 34, 128, 384, 436, 715, 907
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 235, 913
MnlI CCTC 8 cut(s) 97, 100, 239, 300, 335, 360, 1035, 1158
MroI TCCGGA 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 5 cut(s) 234, 435, 723, 1010, 1124
MslI CAYNNNNRTG 2 cut(s) 198, 996
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 1220
MunI CAATTG 1 cut(s) 907
Mva1269I GAATGC 1 cut(s) 981
MvaI CCWGG 1 cut(s) 1220
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 121, 482, 698, 899
NdeII GATC 4 cut(s) 147, 225, 661, 1105
NlaIII CATG 3 cut(s) 502, 848, 1249
NlaIV GGNNCC 1 cut(s) 914
NmuCI GTSAC 3 cut(s) 265, 989, 1047
NsbI TGCGCA 1 cut(s) 1234
OliI CACNNNNGTG 1 cut(s) 996
PagI TCATGA 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 258, 280, 449
PflFI GACNNNGTC 1 cut(s) 1089
PkrI GCNGC 6 cut(s) 123, 292, 478, 778, 781, 1059
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 1218
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 1218
PspN4I GGNNCC 1 cut(s) 914
PstI CTGCAG 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 1089
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 2 cut(s) 914, 1274
RsaNI GTAC 2 cut(s) 913, 1273
RseI CAYNNNNRTG 2 cut(s) 198, 996
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 5 cut(s) 234, 435, 723, 1010, 1124
SatI GCNGC 6 cut(s) 122, 291, 477, 777, 780, 1058
Sau3AI GATC 4 cut(s) 147, 225, 661, 1105
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 1220
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 74, 824
SfcI CTRYAG 2 cut(s) 285, 921
SmiMI CAYNNNNRTG 2 cut(s) 198, 996
SmlI CTYRAG 5 cut(s) 215, 272, 351, 1026, 1162
SmoI CTYRAG 5 cut(s) 215, 272, 351, 1026, 1162
Sse9I AATT 6 cut(s) 34, 128, 384, 436, 715, 907
SsiI CCGC 2 cut(s) 122, 1055
SspMI CTAG 4 cut(s) 47, 294, 665, 1262
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 1218
StyI CCWWGG 2 cut(s) 539, 888
TaaI ACNGT 6 cut(s) 79, 585, 766, 949, 1047, 1122
TaiI ACGT 5 cut(s) 303, 528, 673, 801, 1158
TaqII GACCGA 2 cut(s) 746, 977
TasI AATT 6 cut(s) 34, 128, 384, 436, 715, 907
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 3 cut(s) 258, 280, 449
Tru1I TTAA 5 cut(s) 234, 435, 723, 1010, 1124
Tru9I TTAA 5 cut(s) 234, 435, 723, 1010, 1124
TscAI CASTG 5 cut(s) 33, 448, 486, 588, 1003
TseFI GTSAC 3 cut(s) 265, 989, 1047
TseI GCWGC 5 cut(s) 290, 476, 776, 779, 1057
Tsp45I GTSAC 3 cut(s) 265, 989, 1047
TspDTI ATGAA 3 cut(s) 487, 1193, 1234
TspRI CASTG 5 cut(s) 33, 448, 486, 588, 1003
Tth111I GACNNNGTC 1 cut(s) 1089
XapI RAATTY 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 1158
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 4 cut(s) 47, 294, 665, 1262
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.