Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005009

Physical Location & Seq

Genomic Coordinates Forward (+)

18858545 .. 18859594

Gene Structure 1050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0211100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTGTCGTAGTCTCTGACCAAGATGCAGATGCAGGGGTTATCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTCTAAAGGTAGAGTCCTTTTCATTGCTGACGGATGATTCAATTGCGGAGACAAATGTTAAATGTGAATCGGGGGTCTTTGGAGCCGGAGGATACAATTGGAAACTCGTGTTCTATCCATATGGAAACAAGAAGAAGAATGTAGAAGACCACATCTCTCTCTACTTGGTAACCGCGGGAGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAGGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGATGCCAATACAAGAAACTTTTGCTTTCGAGGGGAGATGTCTGGTGCAGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTACTGATGCCTCCAATGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAAGCAGATTGTCTATCAATAAGGAAGACTACCTCAGAGAAGTACAAGCATACTTGGAAGGTTGGGAACTTTTCAAACTTAGCCGCTCAATGCTATGAAGAACGATTCACTGCTGGAGGCCAGAAATGGAAGATAGATCTCTATCCCTCGGGAGACGGTGATGGAAGGGGTACTCATCTCTCTCTTTATTTGTCATTAGCTGATCCAGAAGATCTTCGTGATGGCACCAAAATATCAACCAATTTCTGCCTGCGCATTGTAGATCAAGTACATGCAATGCACTATACTGGGAATGATAGTAATTGTCTTTTCACTGGCGCTACTTCGAATTTCGGTTGGGATCATTTCATTGCACTGGACGATTTCAGACGGGAAGACGGAGGGCTTTTGAGGGAGGATACTTGCATTGTGGAGGCAGAGGTCACGGTCAACAGAACTGCTATGGAACTAAGTACCTTAGGCCAAAATGACACTAATTCGGGAAGATGTAAATGTCGAAAGATTTGCTCAGGGATCGCGCAGTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003975 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006489 GO:0006490 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016780 GO:0019538 GO:0019637 GO:0031224 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046465 GO:0070085 GO:0071704 GO:0090407 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glycos_transf_4

Protein Analysis

349

Amino Acids

38.83

Weight (kDa)

5.05

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	25 - 163	4.7e-32	MATH domain
MATH	PF00917	44 - 165	2.7e-07	MATH domain
MATH_2	PF22486	189 - 314	2.9e-28	MATH domain
MATH	PF00917	195 - 316	1.6e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41490 AT3G57220
fragaria_vesca	FvH4_6g24760 FvH4_6g24760 FvH4_6g24760 FvH4_6g24760 FvH4_6g24760
malus_domestica	MD12G1086200.v1.1 MD14G1080600.v1.1
prunus_persica	Prupe.1G032300_v2.0.a1 Prupe.7G050100_v2.0.a1
pyrus_communis	pycom12g07300 pycom14g06990
rosa_chinensis	RchiOBHm_Chr3g0484361 RchiOBHm_Chr3g0484421 RchiOBHm_Chr3g0484511
rosa_laevigata	RLG00000023230
rosa_multiflora	Rmu_sc0002910.1_g000009
rosa_roxburghii	Rroxscaffold_6G00397750
rosa_rugosa	Rorug03G0211000 Rorug03G0211100 Rorug03G0211200
rosa_samantha	Rh3AG260100 Rh3AG260600 Rh3AG261100 Rh3AG261800 Rh3BG296800 Rh3CG294300 Rh3DG290400
rosa_wichuraiana	Rw3G023470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	773
AccB1I	GGYRCC	1 cut(s)	743
AccBSI	CCGCTC	1 cut(s)	605
AccII	CGCG	2 cut(s)	254, 1037
AciI	CCGC	4 cut(s)	125, 252, 254, 603
AclWI	GGATC	3 cut(s)	716, 867, 1040
AcsI	RAATTY	1 cut(s)	847
AfaI	GTAC	6 cut(s)	335, 516, 563, 691, 789, 973
AgsI	TTSAA	3 cut(s)	120, 347, 594
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	482, 719
AluI	AGCT	2 cut(s)	482, 719
Alw26I	GTCTC	4 cut(s)	19, 122, 421, 666
AlwI	GGATC	3 cut(s)	716, 867, 1040
Ama87I	CYCGRG	1 cut(s)	667
AoxI	GGCC	2 cut(s)	637, 979
ApoI	RAATTY	1 cut(s)	847
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	3 cut(s)	774, 839, 1039
AsuHPI	GGTGA	2 cut(s)	290, 689
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	667
AxyI	CCTNAGG	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	743
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	4 cut(s)	231, 514, 551, 900
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	674, 734
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	164, 910
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	4 cut(s)	19, 122, 421, 666
BfoI	RGCGCY	1 cut(s)	840
BfuI	GTATCC	2 cut(s)	164, 910
BglII	AGATCT	2 cut(s)	655, 730
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	163, 745
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	4 cut(s)	16, 22, 340, 427
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	4 cut(s)	231, 514, 551, 900
BpmI	CTGGAG	2 cut(s)	254, 654
Bpu10I	CCTNAGC	2 cut(s)	483, 1027
Bpu14I	TTCGAA	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	2 cut(s)	252, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse1I	ACTGG	3 cut(s)	811, 838, 879
Bse21I	CCTNAGG	1 cut(s)	976
Bse3DI	GCAATG	3 cut(s)	101, 801, 867
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	252, 666
BseGI	GGATG	1 cut(s)	118
BseJI	GATNNNNATC	1 cut(s)	660
BseMI	GCAATG	3 cut(s)	101, 801, 867
BseMII	CTCAG	3 cut(s)	474, 567, 1041
BseNI	ACTGG	3 cut(s)	811, 838, 879
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	254, 1037
BshFI	GGCC	2 cut(s)	639, 981
BshNI	GGYRCC	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	4 cut(s)	19, 122, 421, 666
BsmBI	CGTCTC	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	639, 981
BsoBI	CYCGRG	1 cut(s)	667
Bsp119I	TTCGAA	1 cut(s)	845
Bsp143I	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
BspACI	CCGC	4 cut(s)	125, 252, 254, 603
BspANI	GGCC	2 cut(s)	639, 981
BspCNI	CTCAG	3 cut(s)	475, 566, 1040
BspFNI	CGCG	2 cut(s)	254, 1037
BspLI	GGNNCC	2 cut(s)	163, 745
BspPI	GGATC	3 cut(s)	716, 867, 1040
BspT104I	TTCGAA	1 cut(s)	845
BspT107I	GGYRCC	1 cut(s)	743
BsrBI	CCGCTC	1 cut(s)	605
BsrDI	GCAATG	3 cut(s)	101, 801, 867
BsrI	ACTGG	3 cut(s)	811, 838, 879
BssECI	CCNNGG	2 cut(s)	252, 666
BssMI	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	677, 946
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	770
BstDEI	CTNAG	7 cut(s)	422, 483, 553, 598, 968, 976, 1027
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	254, 1037
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	3 cut(s)	774, 839, 1039
BstKTI	GATC	8 cut(s)	50, 319, 658, 724, 733, 784, 862, 1035
BstMAI	GTCTC	4 cut(s)	19, 122, 421, 666
BstMBI	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	794
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	274
BstUI	CGCG	2 cut(s)	254, 1037
BstV2I	GAAGAC	4 cut(s)	231, 514, 551, 900
BstX2I	RGATCY	2 cut(s)	655, 730
BstYI	RGATCY	2 cut(s)	655, 730
Bsu36I	CCTNAGG	1 cut(s)	976
BsuI	GTATCC	2 cut(s)	164, 910
BsuRI	GGCC	2 cut(s)	639, 981
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	3 cut(s)	627, 831, 872
Cac8I	GCNNGC	1 cut(s)	770
CfoI	GCGC	3 cut(s)	774, 839, 1039
Cfr42I	CCGCGG	1 cut(s)	255
Csp6I	GTAC	6 cut(s)	334, 515, 562, 690, 788, 972
CviAII	CATG	1 cut(s)	791
CviJI	RGCY	9 cut(s)	5, 164, 274, 482, 602, 639, 719, 904, 981
CviKI_1	RGCY	9 cut(s)	5, 164, 274, 482, 602, 639, 719, 904, 981
CviQI	GTAC	6 cut(s)	334, 515, 562, 690, 788, 972
DdeI	CTNAG	7 cut(s)	422, 483, 553, 598, 968, 976, 1027
DpnI	GATC	8 cut(s)	49, 318, 657, 723, 732, 783, 861, 1034
DpnII	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
Eco81I	CCTNAGG	1 cut(s)	976
Eco88I	CYCGRG	1 cut(s)	667
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	1 cut(s)	794
FaiI	YATR	9 cut(s)	199, 201, 289, 291, 570, 615, 792, 804, 962
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	1 cut(s)	790
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	603
FspI	TGCGCA	1 cut(s)	773
GlaI	GCGC	3 cut(s)	773, 838, 1038
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	254, 654
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	2 cut(s)	639, 981
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	3 cut(s)	774, 839, 1039
Hin1II	CATG	1 cut(s)	794
Hin6I	GCGC	3 cut(s)	772, 837, 1037
HinP1I	GCGC	3 cut(s)	772, 837, 1037
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	5 cut(s)	59, 92, 116, 146, 624
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	290, 689
Hpy166II	GTNNAC	1 cut(s)	949
Hpy188I	TCNGA	6 cut(s)	19, 47, 58, 321, 556, 887
Hpy188III	TCNNGA	4 cut(s)	669, 725, 737, 999
Hpy8I	GTNNAC	1 cut(s)	949
HpyAV	CCTTC	2 cut(s)	571, 678
HpyCH4III	ACNGT	2 cut(s)	677, 946
HpyCH4V	TGCA	7 cut(s)	29, 35, 395, 794, 799, 872, 924
HpyF3I	CTNAG	7 cut(s)	422, 483, 553, 598, 968, 976, 1027
Hsp92II	CATG	1 cut(s)	794
HspAI	GCGC	3 cut(s)	772, 837, 1037
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
LmnI	GCTCC	2 cut(s)	161, 479
LweI	GCATC	4 cut(s)	16, 22, 340, 427
MaeIII	GTNAC	3 cut(s)	74, 247, 940
MalI	GATC	8 cut(s)	49, 318, 657, 723, 732, 783, 861, 1034
MbiI	CCGCTC	1 cut(s)	605
MboI	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
MfeI	CAATTG	2 cut(s)	120, 175
MflI	RGATCY	2 cut(s)	655, 730
MluCI	AATT	7 cut(s)	120, 175, 456, 760, 820, 847, 994
MlyI	GAGTC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	120, 175
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	2 cut(s)	254, 1037
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	2 cut(s)	163, 745
NmuCI	GTSAC	1 cut(s)	940
NsbI	TGCGCA	1 cut(s)	773
NspI	RCATGY	1 cut(s)	794
NspV	TTCGAA	1 cut(s)	845
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	59, 116, 146, 624
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	163, 745
PsuI	RGATCY	2 cut(s)	655, 730
RsaI	GTAC	6 cut(s)	335, 516, 563, 691, 789, 973
RsaNI	GTAC	6 cut(s)	334, 515, 562, 690, 788, 972
SacII	CCGCGG	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	8 cut(s)	47, 316, 655, 721, 730, 781, 859, 1032
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	9 cut(s)	90, 305, 484, 489, 554, 582, 721, 942, 977
SfaNI	GCATC	4 cut(s)	16, 22, 340, 427
Sfr303I	CCGCGG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	845
SgrBI	CCGCGG	1 cut(s)	255
Sse9I	AATT	7 cut(s)	120, 175, 456, 760, 820, 847, 994
SsiI	CCGC	4 cut(s)	125, 252, 254, 603
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	677, 946
TaqI	TCGA	3 cut(s)	376, 845, 1015
TasI	AATT	7 cut(s)	120, 175, 456, 760, 820, 847, 994
TatI	WGTACW	3 cut(s)	333, 561, 787
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	4 cut(s)	59, 116, 146, 624
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	3 cut(s)	634, 838, 879
TseFI	GTSAC	1 cut(s)	940
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	3 cut(s)	90, 630, 856
TspGWI	ACGGA	2 cut(s)	125, 912
TspRI	CASTG	3 cut(s)	634, 838, 879
XapI	RAATTY	1 cut(s)	847
XceI	RCATGY	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	732
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.