Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

17381647 .. 17382851

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAGATGCTGGTGAACATTTACGGTGTAACGATAACGTTAACGACGAGGAGCGTTTGCCATTGGAGTTTATGATCGGAAACTCAACATCCACGGCGGAGCTACAGCCGCCTCCACCGTTCTTGGTAAAGACATACAAAGTGGTGGAGGATCCGACGACGGACGGGGTTATATCTTGGAACGAATACGGAACTGGTTTCGTCGTGTGGCAGCCGGCAGAATTCGCTAGAGATCTGTTACCAACACTTTTCAAGCATTGCAACTTCTCTAGCTTCGTTCGCCAGCTCAATACTTACGGTTTTCGAAAAGTAACGACGATAAGATGGGAATTTAGTAATGAGATGTTTCGAAAGGGGCAAAGAGAGCTTATGAGCAATATCCGAAGAAGGAAGAGCCAACATTGGTCACACAACAAGTCTAATCACCAGGTTGTACCAACAACAACGATGGTGAATCAAGAAGGTCATCAACGGATTGGGATTGATCATCACCATGAGGATCAACAGTCTTCCGCCACTTCATCCTCTTTCGTATACACTGCATTACTCGACGAAAACAAATGCTTGAAGAATGAAAACGAGTTATTAAGCTGCGAACTTGGGAAAACCAAGAAGAAATGCAAGCAGCTTATGGAGTTGGTGGAGAGATACAGAGGAGAAGACGAAGATGCAACTGATGAAAGTGATGATGAAGAAGATGAAGGGCTTAAGTTGTTCGGAGTAAAACTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

244

Amino Acids

28.31

Weight (kDa)

5.28

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	41 - 130	5e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	3 cut(s)	98, 110, 513
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	3 cut(s)	146, 159, 507
AcsI	RAATTY	2 cut(s)	221, 329
AfaI	GTAC	1 cut(s)	435
AflII	CTTAAG	1 cut(s)	707
AgsI	TTSAA	3 cut(s)	253, 568, 731
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	6 cut(s)	103, 273, 286, 367, 591, 628
AluI	AGCT	6 cut(s)	103, 273, 286, 367, 591, 628
AlwI	GGATC	3 cut(s)	146, 159, 507
ApeKI	GCWGC	3 cut(s)	211, 591, 625
ApoI	RAATTY	2 cut(s)	221, 329
AsuHPI	GGTGA	4 cut(s)	26, 416, 463, 482
AsuII	TTCGAA	2 cut(s)	304, 349
BamHI	GGATCC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	501, 666
BbvI	GCAGC	3 cut(s)	223, 578, 637
BccI	CCATC	2 cut(s)	318, 442
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	484
BfaI	CTAG	2 cut(s)	228, 270
BfmI	CTRYAG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	707
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	4 cut(s)	110, 212, 592, 626
BlsI	GCNGC	4 cut(s)	111, 213, 593, 627
Bme1390I	CCNGG	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	2 cut(s)	501, 666
Bpu14I	TTCGAA	2 cut(s)	304, 349
BsaJI	CCNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	89, 521
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	65, 669
BseXI	GCAGC	3 cut(s)	223, 578, 637
BsiSI	CCGG	1 cut(s)	215
Bsp119I	TTCGAA	2 cut(s)	304, 349
Bsp143I	GATC	5 cut(s)	75, 151, 232, 484, 499
BspACI	CCGC	3 cut(s)	98, 110, 513
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	3 cut(s)	146, 159, 507
BspQI	GCTCTTC	1 cut(s)	386
BspT104I	TTCGAA	2 cut(s)	304, 349
BspTI	CTTAAG	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	5 cut(s)	75, 151, 232, 484, 499
BssNAI	GTATAC	1 cut(s)	535
Bst1107I	GTATAC	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	4 cut(s)	27, 120, 299, 507
Bst6I	CTCTTC	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	707
BstBI	TTCGAA	2 cut(s)	304, 349
BstC8I	GCNNGC	3 cut(s)	216, 284, 623
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	89, 521
BstKTI	GATC	5 cut(s)	78, 154, 235, 487, 502
BstMBI	GATC	5 cut(s)	75, 151, 232, 484, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 224, 279, 364
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	104
BstV1I	GCAGC	3 cut(s)	223, 578, 637
BstV2I	GAAGAC	2 cut(s)	501, 666
BstX2I	RGATCY	2 cut(s)	151, 232
BstYI	RGATCY	2 cut(s)	151, 232
BstZ17I	GTATAC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	89, 521
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	3 cut(s)	216, 284, 623
Cfr10I	RCCGGY	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	434
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	1 cut(s)	494
CviQI	GTAC	1 cut(s)	434
DpnI	GATC	5 cut(s)	77, 153, 234, 486, 501
DpnII	GATC	5 cut(s)	75, 151, 232, 484, 499
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EciI	GGCGGA	2 cut(s)	113, 502
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	497
FaiI	YATR	7 cut(s)	74, 136, 173, 371, 495, 535, 632
FatI	CATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	110, 212, 592, 626
FokI	GGATG	2 cut(s)	76, 508
Fsp4HI	GCNGC	4 cut(s)	110, 212, 592, 626
FspBI	CTAG	2 cut(s)	228, 270
GluI	GCNGC	4 cut(s)	110, 212, 592, 626
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	454
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	4 cut(s)	26, 416, 463, 482
Hpy166II	GTNNAC	3 cut(s)	17, 43, 535
Hpy188I	TCNGA	4 cut(s)	80, 156, 383, 719
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	3 cut(s)	17, 43, 535
Hpy99I	CGWCG	6 cut(s)	50, 160, 163, 206, 319, 554
HpyAV	CCTTC	3 cut(s)	381, 455, 695
HpyCH4III	ACNGT	4 cut(s)	27, 120, 299, 507
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	261, 542, 621, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 224, 279, 364
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	75, 151, 232, 484, 499
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	2 cut(s)	52, 100
LpnPI	CCDG	5 cut(s)	180, 228, 296, 413, 440
Lsp1109I	GCAGC	3 cut(s)	223, 578, 637
LweI	GCATC	1 cut(s)	658
MabI	ACCWGGT	1 cut(s)	426
MaeI	CTAG	2 cut(s)	228, 270
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	4 cut(s)	29, 237, 310, 405
MalI	GATC	5 cut(s)	77, 153, 234, 486, 501
MboI	GATC	5 cut(s)	75, 151, 232, 484, 499
MflI	RGATCY	2 cut(s)	151, 232
MluCI	AATT	2 cut(s)	221, 329
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	6 cut(s)	43, 123, 142, 490, 535, 647
MroNI	GCCGGC	1 cut(s)	214
MseI	TTAA	3 cut(s)	42, 587, 708
MslI	CAYNNNNRTG	1 cut(s)	492
MspCI	CTTAAG	1 cut(s)	707
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	4 cut(s)	109, 224, 279, 364
NaeI	GCCGGC	1 cut(s)	216
NdeII	GATC	5 cut(s)	75, 151, 232, 484, 499
NgoMIV	GCCGGC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	405
NspV	TTCGAA	2 cut(s)	304, 349
PciSI	GCTCTTC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	4 cut(s)	111, 213, 593, 627
Psp1406I	AACGTT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	151, 232
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	42, 587, 708
SatI	GCNGC	4 cut(s)	110, 212, 592, 626
Sau3AI	GATC	5 cut(s)	75, 151, 232, 484, 499
ScrFI	CCNGG	1 cut(s)	428
SetI	ASST	9 cut(s)	42, 105, 275, 288, 369, 432, 466, 593, 630
SexAI	ACCWGGT	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	104
SfuI	TTCGAA	2 cut(s)	304, 349
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	2 cut(s)	221, 329
SsiI	CCGC	3 cut(s)	98, 110, 513
SspMI	CTAG	2 cut(s)	228, 270
StyD4I	CCNGG	1 cut(s)	426
TaaI	ACNGT	4 cut(s)	27, 120, 299, 507
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	304, 349, 549
TasI	AATT	2 cut(s)	221, 329
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	3 cut(s)	42, 587, 708
Tru9I	TTAA	3 cut(s)	42, 587, 708
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	3 cut(s)	211, 591, 625
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	5 cut(s)	510, 588, 693, 705, 714
TspGWI	ACGGA	3 cut(s)	176, 204, 487
TspRI	CASTG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	707
XapI	RAATTY	2 cut(s)	221, 329
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	2 cut(s)	228, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.