Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

9586418 .. 9588814

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G056700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGGTGTGTGTGACCAGAAGGGTTTGCTGGAATATGTGAGGAAGTCAAGCCCTCCACCTTTCTTGTTGAAGACCTACATGCTGGTGGAGGATCCCACCACCGACGACGTGATCTCGTGGAACGATGACGGGTCGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCCAGGGATCTCCTCCCAACACTCTTCAAGCACAGTAACTTCTCTAGCTTTGTCAGGCAGCTAAATACTTATGGATTCCGCAAAGTTTCAACAAGCAGGTGGGAGTTCTGCAACGACAAGTTCCGAAAGGGTGAAAAGGATCAGCTATGTGACATCCGCAGAAGAAAAGCATGGGCCAGCAAGCAACAGCCAATCAACAACATTGCCCTAAACCAAGCTGCACAAGCAATGCAAAATCAAGACGAGTTTGATGAAGACCAGAGATCAAACTCCTCAACCTCCTCCTCATCCGATTACAGCTCTCTCGTGGACGAAAACAAACGGCTGAAGCAGGAGAATGGGGTTTTAAGCTCAGAGCTCACCAGCATGAAGAGGAAATGCAAGGAGCTTCTTGACTTGGTGGCCAAGTATGGAGACTCAGCTGAGAAAGAAGAGCAGGAGAATAGTGAGAGGGTGCCCAAGTTGTTTGGGGTGAGATTGGAAGTGGAGGGAGAGACGGAGAGGAAGAGGAAGAGAGCTGAAATTAGTGAGAGCGCAAGCATTTTACTATCTCAAGCATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

245

Amino Acids

28.0

Weight (kDa)

5.75

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	622
AciI	CCGC	3 cut(s)	161, 247, 325
AclWI	GGATC	4 cut(s)	89, 102, 183, 315
AcoI	YGGCCR	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	73, 196, 258
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	576, 656
AlwI	GGATC	4 cut(s)	89, 102, 183, 315
AoxI	GGCC	2 cut(s)	342, 570
ApeKI	GCWGC	3 cut(s)	154, 226, 386
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	311, 520, 652
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	528
BauI	CACGAG	2 cut(s)	118, 473
BbsI	GAAGAC	2 cut(s)	80, 429
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	166, 238, 373
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	576, 656
BfaI	CTAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	3 cut(s)	155, 227, 387
BlsI	GCNGC	3 cut(s)	156, 228, 388
Bme1390I	CCNGG	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	96, 624
BmrFI	CCNGG	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	80, 429
BpuEI	CTTGAG	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	157
Bse3DI	GCAATG	2 cut(s)	369, 402
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	321, 455
BseMI	GCAATG	2 cut(s)	369, 402
BseMII	CTCAG	3 cut(s)	534, 582, 600
BseRI	GAGGAG	4 cut(s)	170, 430, 439, 442
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	166, 238, 373
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	344, 572
BshNI	GGYRCC	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	576, 656
BsmBI	CGTCTC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	344, 572
Bsp1286I	GDGCHC	2 cut(s)	528, 627
Bsp143I	GATC	5 cut(s)	94, 114, 175, 307, 431
BspACI	CCGC	3 cut(s)	161, 247, 325
BspANI	GGCC	2 cut(s)	344, 572
BspCNI	CTCAG	3 cut(s)	533, 583, 599
BspLI	GGNNCC	2 cut(s)	96, 624
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	4 cut(s)	89, 102, 183, 315
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	1 cut(s)	622
BsrDI	GCAATG	2 cut(s)	369, 402
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	5 cut(s)	94, 114, 175, 307, 431
BssSI	CACGAG	2 cut(s)	118, 473
Bst2BI	CACGAG	2 cut(s)	118, 473
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	5 cut(s)	197, 533, 594, 668, 674
BstC8I	GCNNGC	5 cut(s)	159, 346, 350, 706, 727
BstDEI	CTNAG	3 cut(s)	520, 586, 591
BstF5I	GGATG	2 cut(s)	321, 455
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	97, 117, 178, 310, 434
BstMAI	GTCTC	2 cut(s)	576, 656
BstMBI	GATC	5 cut(s)	94, 114, 175, 307, 431
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 392
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	2 cut(s)	85, 729
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	3 cut(s)	166, 238, 373
BstV2I	GAAGAC	2 cut(s)	80, 429
BstX2I	RGATCY	2 cut(s)	94, 175
BstYI	RGATCY	2 cut(s)	94, 175
BsuRI	GGCC	2 cut(s)	344, 572
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	321, 455
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	159, 346, 350, 706, 727
CfoI	GCGC	1 cut(s)	704
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	342
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	4 cut(s)	82, 339, 535, 726
DdeI	CTNAG	3 cut(s)	520, 586, 591
DpnI	GATC	5 cut(s)	96, 116, 177, 309, 433
DpnII	GATC	5 cut(s)	94, 114, 175, 307, 431
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	5 cut(s)	197, 533, 594, 668, 674
EarI	CTCTTC	5 cut(s)	197, 533, 594, 668, 674
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	4 cut(s)	85, 342, 538, 729
FaiI	YATR	8 cut(s)	39, 83, 240, 316, 340, 536, 579, 727
FatI	CATG	4 cut(s)	81, 338, 534, 725
Fnu4HI	GCNGC	3 cut(s)	155, 227, 387
FokI	GGATG	2 cut(s)	308, 442
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	3 cut(s)	155, 227, 387
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	3 cut(s)	155, 227, 387
HaeIII	GGCC	2 cut(s)	344, 572
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	704
Hin1II	CATG	4 cut(s)	85, 342, 538, 729
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	2 cut(s)	243, 584
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	3 cut(s)	311, 520, 652
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	3 cut(s)	293, 460, 523
Hpy188III	TCNNGA	2 cut(s)	407, 560
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	2 cut(s)	110, 113
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	5 cut(s)	279, 389, 400, 549, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 392
HpyF3I	CTNAG	3 cut(s)	520, 586, 591
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	85, 342, 538, 729
HspAI	GCGC	1 cut(s)	702
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	94, 114, 175, 307, 431
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	3 cut(s)	166, 238, 373
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	14, 203, 317
MalI	GATC	5 cut(s)	96, 116, 177, 309, 433
MboI	GATC	5 cut(s)	94, 114, 175, 307, 431
MboII	GAAGA	8 cut(s)	85, 184, 342, 434, 550, 611, 685, 691
MflI	RGATCY	2 cut(s)	94, 175
MhlI	GDGCHC	2 cut(s)	528, 627
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	1 cut(s)	690
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	578
Mox20I	TGGCCA	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	2 cut(s)	86, 533
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	167, 392
NaeI	GCCGGC	1 cut(s)	159
NdeII	GATC	5 cut(s)	94, 114, 175, 307, 431
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	4 cut(s)	85, 342, 538, 729
NlaIV	GGNNCC	2 cut(s)	96, 624
NmuCI	GTSAC	2 cut(s)	14, 317
NspI	RCATGY	2 cut(s)	85, 729
PaeI	GCATGC	1 cut(s)	729
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	594
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	156, 228, 388
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	96, 624
PspPI	GGNCC	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	94, 175
PvuII	CAGCTG	1 cut(s)	590
RseI	CAYNNNNRTG	2 cut(s)	86, 533
SacI	GAGCTC	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	3 cut(s)	155, 227, 387
Sau3AI	GATC	5 cut(s)	94, 114, 175, 307, 431
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	528, 627
SmiMI	CAYNNNNRTG	2 cut(s)	86, 533
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
SphI	GCATGC	1 cut(s)	729
Sse9I	AATT	1 cut(s)	690
SsiI	CCGC	3 cut(s)	161, 247, 325
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	114
TasI	AATT	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TseFI	GTSAC	2 cut(s)	14, 317
TseI	GCWGC	3 cut(s)	154, 226, 386
Tsp45I	GTSAC	2 cut(s)	14, 317
TspDTI	ATGAA	2 cut(s)	435, 551
TspGWI	ACGGA	1 cut(s)	680
XceI	RCATGY	2 cut(s)	85, 729
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.