Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

6877054 .. 6880815

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGGGTGTGTGTGATGAGCAGAAGGGTTTGTTAGAATATGTTAGGAAGTCAAGCCCGCCACCTTTCCTGTTGAAGACCTACATCCTGGTGGAGGATCCAGCAACGGACGACGTGATATCCTGGAACGACGATGGGTCGGCGTTCGTGGTGTGGCAGACGGCGGAATTTGCCCGGGATCTCCTCCCAACACTCTTCAAGCACAGTAACTTCTCTAGCTTTGTCAGGCAGCTAAATACTTATGGATTTCGCAAAGTTGCCACAAACAGGTGGGAGTTCTGCAACGACAAGTTCCGAAAGGGCGAAAAGGATCAGCTATGTGACATCCGTAGAAGAAAAGCATGGGCCACCAAGCCACAGCCGATTAACAATGCAGTAACCCAGAAAGCTGGAGCAGCTGCACTACTACCAAATGAGTTTGATGAAGACCAAAGGTCCTCCTCAACTTCATCATCATCTGAGTTTTGCTCTCTCGTTGATGAAAACAAACGGCTGAAGCAGGAGAATGGCGTTTTGAGCTCAGAGCTTACGAGCATGAAACGGAAGTGCAAGGAGCTTCTCCATTTGGTGGCAAGGTATGGAGACTCAGCTGAGAAAGAGGAGGAAGATAATGAAAGAGTTCCAAAGTTGTTTGGAGTGAGACTGGAGGTTGCGGGAGAGAGGGAGAGGAAGAGAAAGAGAACTGAAATTAGTAAAAACGCAAGCGTTTTACTATCTCAAGCATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

244

Amino Acids

27.78

Weight (kDa)

8.45

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	3 cut(s)	59, 164, 653
AclWI	GGATC	4 cut(s)	92, 105, 186, 318
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	515
AfiI	CCNNNNNNNGG	3 cut(s)	94, 267, 568
AgsI	TTSAA	2 cut(s)	76, 199
AhdI	GACNNNNNGTC	2 cut(s)	136, 433
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	87, 122
AluBI	AGCT	9 cut(s)	219, 232, 316, 389, 398, 519, 526, 556, 590
AluI	AGCT	9 cut(s)	219, 232, 316, 389, 398, 519, 526, 556, 590
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	2 cut(s)	576, 634
AlwI	GGATC	4 cut(s)	92, 105, 186, 318
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	229, 395, 398
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	345, 435
AsuC2I	CCSGG	2 cut(s)	175, 176
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	521
BbsI	GAAGAC	2 cut(s)	83, 432
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	241, 385, 407
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	2 cut(s)	177, 506
BciT130I	CCWGG	2 cut(s)	89, 124
BcnI	CCSGG	2 cut(s)	175, 176
BcoDI	GTCTC	2 cut(s)	576, 634
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	230, 396, 399
BlsI	GCNGC	3 cut(s)	231, 397, 400
Bme1390I	CCNGG	4 cut(s)	89, 124, 175, 176
Bme18I	GGWCC	1 cut(s)	435
BmeRI	GACNNNNNGTC	2 cut(s)	136, 433
BmeT110I	CYCGRG	1 cut(s)	174
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	345, 435
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	4 cut(s)	89, 124, 175, 176
BpiI	GAAGAC	2 cut(s)	83, 432
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	2 cut(s)	411, 665
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	2 cut(s)	175, 176
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 267, 568
Bse1I	ACTGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	89, 124
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	84, 324
BseLI	CCNNNNNNNGG	3 cut(s)	94, 267, 568
BseMII	CTCAG	4 cut(s)	450, 534, 582, 600
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	3 cut(s)	173, 430, 614
BseXI	GCAGC	3 cut(s)	241, 385, 407
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	94, 267, 568
BsmAI	GTCTC	2 cut(s)	576, 634
BsnI	GGCC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	97, 178, 310
BspACI	CCGC	3 cut(s)	59, 164, 653
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	4 cut(s)	451, 533, 583, 599
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	4 cut(s)	92, 105, 186, 318
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	97, 178, 310
Bst2UI	CCWGG	2 cut(s)	89, 124
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	200, 665
BstC8I	GCNNGC	3 cut(s)	59, 703, 724
BstDEI	CTNAG	4 cut(s)	459, 520, 586, 591
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	84, 324
BstKTI	GATC	3 cut(s)	100, 181, 313
BstMAI	GTCTC	2 cut(s)	576, 634
BstMBI	GATC	3 cut(s)	97, 178, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 395, 516
BstNI	CCWGG	2 cut(s)	89, 124
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	4 cut(s)	87, 122, 173, 174
BstV1I	GCAGC	3 cut(s)	241, 385, 407
BstV2I	GAAGAC	2 cut(s)	83, 432
BstX2I	RGATCY	2 cut(s)	97, 178
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	2 cut(s)	97, 178
BsuRI	GGCC	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	84, 324
Cac8I	GCNNGC	3 cut(s)	59, 703, 724
Cfr13I	GGNCC	2 cut(s)	345, 435
Cfr9I	CCCGGG	1 cut(s)	174
CviAII	CATG	3 cut(s)	342, 535, 723
DdeI	CTNAG	4 cut(s)	459, 520, 586, 591
DpnI	GATC	3 cut(s)	99, 180, 312
DpnII	GATC	3 cut(s)	97, 178, 310
DriI	GACNNNNNGTC	2 cut(s)	136, 433
Eam1104I	CTCTTC	2 cut(s)	200, 665
Eam1105I	GACNNNNNGTC	2 cut(s)	136, 433
EarI	CTCTTC	2 cut(s)	200, 665
EciI	GGCGGA	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	87, 122
EcoRV	GATATC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	3 cut(s)	345, 538, 726
FaiI	YATR	7 cut(s)	42, 243, 319, 343, 536, 579, 724
FatI	CATG	3 cut(s)	341, 534, 722
FauI	CCCGC	2 cut(s)	66, 646
Fnu4HI	GCNGC	3 cut(s)	230, 396, 399
FokI	GGATG	2 cut(s)	71, 311
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	3 cut(s)	230, 396, 399
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	3 cut(s)	230, 396, 399
GsuI	CTGGAG	2 cut(s)	411, 665
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	3 cut(s)	345, 538, 726
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	296, 460, 523
Hpy99I	CGWCG	2 cut(s)	116, 134
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	282, 374, 401, 549, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 395, 516
HpyF3I	CTNAG	4 cut(s)	459, 520, 586, 591
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	345, 538, 726
Kzo9I	GATC	3 cut(s)	97, 178, 310
LmnI	GCTCC	2 cut(s)	392, 553
Lsp1109I	GCAGC	3 cut(s)	241, 385, 407
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	206, 320, 376
MalI	GATC	3 cut(s)	99, 180, 312
MboI	GATC	3 cut(s)	97, 178, 310
MboII	GAAGA	6 cut(s)	88, 187, 345, 437, 617, 682
MflI	RGATCY	2 cut(s)	97, 178
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	2 cut(s)	167, 687
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	9 cut(s)	88, 194, 448, 451, 592, 595, 640, 654, 660
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	398, 590
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	4 cut(s)	89, 124, 175, 176
MvaI	CCWGG	2 cut(s)	89, 124
MwoI	GCNNNNNNNGC	3 cut(s)	170, 395, 516
NciI	CCSGG	2 cut(s)	175, 176
NdeII	GATC	3 cut(s)	97, 178, 310
NlaIII	CATG	3 cut(s)	345, 538, 726
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	726
PaeI	GCATGC	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	618
PflMI	CCANNNNNTGG	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	231, 397, 400
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	87, 122
PspGI	CCWGG	2 cut(s)	87, 122
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	345, 435
PspPPI	RGGWCCY	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	97, 178
PvuII	CAGCTG	2 cut(s)	398, 590
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	230, 396, 399
Sau3AI	GATC	3 cut(s)	97, 178, 310
Sau96I	GGNCC	2 cut(s)	345, 435
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	4 cut(s)	89, 124, 175, 176
SduI	GDGCHC	1 cut(s)	521
SinI	GGWCC	1 cut(s)	435
SmaI	CCCGGG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	2 cut(s)	167, 687
SsiI	CCGC	3 cut(s)	59, 164, 653
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	4 cut(s)	87, 122, 173, 174
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	117
TasI	AATT	2 cut(s)	167, 687
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	3 cut(s)	229, 395, 398
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	5 cut(s)	438, 438, 495, 551, 627
TspGWI	ACGGA	3 cut(s)	122, 317, 556
TspMI	CCCGGG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	726
XmaI	CCCGGG	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.