Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012200.1

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Reverse (-)

17707 .. 19297

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012200.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggagggtgtgtgtgatcaaaagggtctgttggaatacgtgaggaagtcgagcccgccgcctttcttgttgaagacgtacatgctggtggaggatccggcaacggacgatgtcatatcgtggaacgaggacgggtctgcgttcgtggtgtggcagccggccgagtttgcccgagatctcctcccaactctcttcaagcacagtaacttctctagctttgtcaggcagctaaatacctacggatttcgaaaagttgcaacaagccggtgggagttttgcaacgataagtttcgaaagggtgaaaaggatcatctatgtgaaatccgacgtagaaaagcatgggcgaacaagcaacagccaaatgcggcgctagctcaaggccaagcagcagcagaagatgatcagtctgatgaagaccatgaaaggtcttcctcgacttcttcttcgtccgagtacagctctcttattgatgaaaacaaacggctaaagatggaaaatggagttttgagctgcgagcttacgagcatgaaaaacaagtgcaaggagcttctcgatttggtggccaagtatggccgggattcggagagaggtaaagaagaagacgaccaaaggccaaagctgtttggggtgagattggaggttgagggagagagggaaaggaagagaaagagggctgagatactcagtgagagcgcaagcattttactgtctcaagcatgcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

241

Amino Acids

27.61

Weight (kDa)

6.06

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 59, 365
AclWI	GGATC	3 cut(s)	89, 102, 315
AcoI	YGGCCR	3 cut(s)	159, 561, 571
AfaI	GTAC	2 cut(s)	80, 455
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	2 cut(s)	73, 196
AluBI	AGCT	8 cut(s)	216, 229, 374, 459, 510, 517, 547, 619
AluI	AGCT	8 cut(s)	216, 229, 374, 459, 510, 517, 547, 619
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	3 cut(s)	89, 102, 315
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	5 cut(s)	159, 379, 561, 571, 611
ApeKI	GCWGC	5 cut(s)	154, 226, 386, 389, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AspLEI	GCGC	2 cut(s)	370, 695
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	311, 640
AsuII	TTCGAA	2 cut(s)	247, 292
AsuNHI	GCTAGC	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	4 cut(s)	80, 420, 420, 606
BbvI	GCAGC	5 cut(s)	166, 238, 398, 401, 497
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	497
BclI	TGATCA	2 cut(s)	16, 400
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	2 cut(s)	213, 371
BfoI	RGCGCY	1 cut(s)	371
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	7 cut(s)	59, 155, 227, 366, 387, 390, 511
BlsI	GCNGC	7 cut(s)	60, 156, 228, 367, 388, 391, 512
Bme1390I	CCNGG	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	575
BmtI	GCTAGC	1 cut(s)	374
BpiI	GAAGAC	4 cut(s)	80, 420, 420, 606
BplI	GAGNNNNNCTC	4 cut(s)	165, 197, 443, 475
Bpu14I	TTCGAA	2 cut(s)	247, 292
BpuEI	CTTGAG	2 cut(s)	360, 696
BpuMI	CCSGG	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	40
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	2 cut(s)	157, 264
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	2 cut(s)	666, 697
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	5 cut(s)	166, 238, 398, 401, 497
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	5 cut(s)	161, 381, 563, 573, 613
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	98, 158, 265, 574
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	714
BsnI	GGCC	5 cut(s)	161, 381, 563, 573, 613
BsoBI	CYCGRG	1 cut(s)	171
Bsp119I	TTCGAA	2 cut(s)	247, 292
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	16, 94, 175, 307, 400
BspACI	CCGC	3 cut(s)	56, 59, 365
BspANI	GGCC	5 cut(s)	161, 381, 563, 573, 613
BspCNI	CTCAG	2 cut(s)	667, 696
BspLI	GGNNCC	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	3 cut(s)	89, 102, 315
BspT104I	TTCGAA	2 cut(s)	247, 292
BsrFI	RCCGGY	2 cut(s)	157, 264
BssAI	RCCGGY	2 cut(s)	157, 264
BssMI	GATC	5 cut(s)	16, 94, 175, 307, 400
Bst4CI	ACNGT	2 cut(s)	203, 708
Bst6I	CTCTTC	2 cut(s)	197, 656
BstBAI	YACGTR	1 cut(s)	40
BstBI	TTCGAA	2 cut(s)	247, 292
BstC8I	GCNNGC	6 cut(s)	56, 159, 372, 515, 697, 718
BstDEI	CTNAG	2 cut(s)	675, 683
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	2 cut(s)	370, 695
BstKTI	GATC	5 cut(s)	19, 97, 178, 310, 403
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	5 cut(s)	16, 94, 175, 307, 400
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 371
BstNSI	RCATGY	2 cut(s)	85, 720
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	5 cut(s)	166, 238, 398, 401, 497
BstV2I	GAAGAC	4 cut(s)	80, 420, 420, 606
BstX2I	RGATCY	2 cut(s)	94, 175
BstYI	RGATCY	2 cut(s)	94, 175
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	161, 381, 563, 573, 613
BtsIMutI	CAGTG	1 cut(s)	691
Cac8I	GCNNGC	6 cut(s)	56, 159, 372, 515, 697, 718
CfoI	GCGC	2 cut(s)	370, 695
Cfr10I	RCCGGY	2 cut(s)	157, 264
Csp6I	GTAC	2 cut(s)	79, 454
CviAII	CATG	5 cut(s)	82, 339, 419, 526, 717
CviQI	GTAC	2 cut(s)	79, 454
DdeI	CTNAG	2 cut(s)	675, 683
DpnI	GATC	5 cut(s)	18, 96, 177, 309, 402
DpnII	GATC	5 cut(s)	16, 94, 175, 307, 400
EaeI	YGGCCR	3 cut(s)	159, 561, 571
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	197, 656
EarI	CTCTTC	2 cut(s)	197, 656
EclXI	CGGCCG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	5 cut(s)	85, 342, 422, 529, 720
FaiI	YATR	8 cut(s)	83, 116, 316, 340, 420, 527, 570, 718
FatI	CATG	5 cut(s)	81, 338, 418, 525, 716
FauI	CCCGC	1 cut(s)	63
FbaI	TGATCA	2 cut(s)	16, 400
Fnu4HI	GCNGC	7 cut(s)	59, 155, 227, 366, 387, 390, 511
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	7 cut(s)	59, 155, 227, 366, 387, 390, 511
FspBI	CTAG	2 cut(s)	213, 371
GlaI	GCGC	2 cut(s)	369, 694
GluI	GCNGC	7 cut(s)	59, 155, 227, 366, 387, 390, 511
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	5 cut(s)	161, 381, 563, 573, 613
HapII	CCGG	4 cut(s)	98, 158, 265, 574
HhaI	GCGC	2 cut(s)	370, 695
Hin1II	CATG	5 cut(s)	85, 342, 422, 529, 720
Hin6I	GCGC	2 cut(s)	368, 693
HinP1I	GCGC	2 cut(s)	368, 693
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	4 cut(s)	98, 158, 265, 574
HphI	GGTGA	2 cut(s)	311, 640
Hpy188I	TCNGA	4 cut(s)	326, 409, 451, 583
Hpy188III	TCNNGA	1 cut(s)	551
Hpy99I	CGWCG	1 cut(s)	330
HpyCH4III	ACNGT	2 cut(s)	203, 708
HpyCH4IV	ACGT	3 cut(s)	39, 77, 328
HpyCH4V	TGCA	4 cut(s)	257, 279, 540, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 371
HpyF3I	CTNAG	2 cut(s)	675, 683
HpySE526I	ACGT	3 cut(s)	39, 77, 328
Hsp92II	CATG	5 cut(s)	85, 342, 422, 529, 720
HspAI	GCGC	2 cut(s)	368, 693
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Ksp22I	TGATCA	2 cut(s)	16, 400
Kzo9I	GATC	5 cut(s)	16, 94, 175, 307, 400
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	6 cut(s)	71, 111, 171, 208, 278, 587
Lsp1109I	GCAGC	5 cut(s)	166, 238, 398, 401, 497
MaeI	CTAG	2 cut(s)	213, 371
MaeII	ACGT	3 cut(s)	39, 77, 328
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	5 cut(s)	18, 96, 177, 309, 402
MboI	GATC	5 cut(s)	16, 94, 175, 307, 400
MflI	RGATCY	2 cut(s)	94, 175
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	563
MluNI	TGGCCA	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	12, 349
Mox20I	TGGCCA	1 cut(s)	563
MroNI	GCCGGC	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	563
MslI	CAYNNNNRTG	2 cut(s)	86, 315
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	4 cut(s)	98, 158, 265, 574
MspR9I	CCNGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	167, 371
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	5 cut(s)	16, 94, 175, 307, 400
NgoMIV	GCCGGC	1 cut(s)	157
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	5 cut(s)	85, 342, 422, 529, 720
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	1 cut(s)	187
NspI	RCATGY	2 cut(s)	85, 720
NspV	TTCGAA	2 cut(s)	247, 292
PaeI	GCATGC	1 cut(s)	720
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	578
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	7 cut(s)	60, 156, 228, 367, 388, 391, 512
Ppu21I	YACGTR	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	96
PsuI	RGATCY	2 cut(s)	94, 175
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	2 cut(s)	80, 455
RsaNI	GTAC	2 cut(s)	79, 454
RseI	CAYNNNNRTG	2 cut(s)	86, 315
SatI	GCNGC	7 cut(s)	59, 155, 227, 366, 387, 390, 511
Sau3AI	GATC	5 cut(s)	16, 94, 175, 307, 400
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	56
SfuI	TTCGAA	2 cut(s)	247, 292
SmiMI	CAYNNNNRTG	2 cut(s)	86, 315
SmlI	CTYRAG	2 cut(s)	375, 711
SmoI	CTYRAG	2 cut(s)	375, 711
SphI	GCATGC	1 cut(s)	720
SsiI	CCGC	3 cut(s)	56, 59, 365
SspMI	CTAG	2 cut(s)	213, 371
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	203, 708
TaiI	ACGT	3 cut(s)	42, 80, 331
TaqI	TCGA	5 cut(s)	50, 247, 292, 434, 552
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	2 cut(s)	61, 368
TfiI	GAWTC	1 cut(s)	578
TscAI	CASTG	1 cut(s)	691
TseI	GCWGC	5 cut(s)	154, 226, 386, 389, 510
TspDTI	ATGAA	4 cut(s)	426, 435, 486, 542
TspGWI	ACGGA	2 cut(s)	119, 255
TspRI	CASTG	1 cut(s)	691
Tth111I	GACNNNGTC	1 cut(s)	110
XceI	RCATGY	2 cut(s)	85, 720
XspI	CTAG	2 cut(s)	213, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.