Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003927.1

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

831 .. 1214

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaattacttgtacccagtgaaggaagagtacccgggcgggtcgagttcatcgcagtggagcggggatcctctgatgacggtggctccaccgcagccgatggaggggctgaatgacaccgggcctcctccatttctgaacaagacttatgacatggtggatgacccgagtactaatcggatagtctcgtggagcagaggagggggcagctttgtggtttgggaccctcattcgtttgtgatgaacctcctgcctagatacttcaagcacaataatttctccagctttgtcaggcagcttaacacttacgtaagtgtctttactccccaaagctcaaattggttagtagagatcttcttcttcagaaaagttcagatggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

6.04

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	3 cut(s)	39, 63, 92
AclWI	GGATC	2 cut(s)	62, 75
AcuI	CTGAAG	1 cut(s)	346
AfaI	GTAC	3 cut(s)	14, 32, 172
AfiI	CCNNNNNNNGG	2 cut(s)	22, 104
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	4 cut(s)	210, 285, 298, 333
AluI	AGCT	4 cut(s)	210, 285, 298, 333
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	62, 75
Ama87I	CYCGRG	2 cut(s)	34, 166
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	94, 207, 295
AspS9I	GGNCC	2 cut(s)	122, 223
AsuC2I	CCSGG	3 cut(s)	35, 36, 121
AvaI	CYCGRG	2 cut(s)	34, 166
AvaII	GGWCC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BauI	CACGAG	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	106, 219, 307
BccI	CCATC	2 cut(s)	94, 370
BcnI	CCSGG	3 cut(s)	35, 36, 121
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	3 cut(s)	95, 208, 296
BlsI	GCNGC	3 cut(s)	96, 209, 297
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	35, 36, 121
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	34, 166
BmgT120I	GGNCC	2 cut(s)	122, 223
BmiI	GGNNCC	4 cut(s)	69, 87, 224, 225
BmrFI	CCNGG	3 cut(s)	35, 36, 121
BmrI	ACTGGG	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	265
BpuMI	CCSGG	3 cut(s)	35, 36, 121
BsaAI	YACGTR	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 104
Bse1I	ACTGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	22, 104
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	117, 213
BseXI	GCAGC	3 cut(s)	106, 219, 307
BshFI	GGCC	1 cut(s)	124
BsiHKCI	CYCGRG	2 cut(s)	34, 166
BsiSI	CCGG	2 cut(s)	35, 120
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	22, 104
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	124
BsoBI	CYCGRG	2 cut(s)	34, 166
Bsp143I	GATC	2 cut(s)	67, 351
BspACI	CCGC	3 cut(s)	39, 63, 92
BspANI	GGCC	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	69, 87, 224, 225
BspPI	GGATC	2 cut(s)	62, 75
BsrBI	CCGCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	2 cut(s)	67, 351
BssSI	CACGAG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	70, 354
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	67, 351
BstSCI	CCNGG	3 cut(s)	33, 34, 119
BstSNI	TACGTA	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	106, 219, 307
BstX2I	RGATCY	2 cut(s)	67, 351
BstYI	RGATCY	2 cut(s)	67, 351
BsuRI	GGCC	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	24, 62
Cfr13I	GGNCC	2 cut(s)	122, 223
Cfr9I	CCCGGG	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	13, 31, 171
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	8 cut(s)	86, 97, 109, 124, 210, 285, 298, 333
CviKI_1	RGCY	8 cut(s)	86, 97, 109, 124, 210, 285, 298, 333
CviQI	GTAC	3 cut(s)	13, 31, 171
DpnI	GATC	2 cut(s)	69, 353
DpnII	GATC	2 cut(s)	67, 351
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco105I	TACGTA	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	346
Eco88I	CYCGRG	2 cut(s)	34, 166
EcoO109I	RGGNCCY	1 cut(s)	223
FaeI	CATG	1 cut(s)	157
FaiI	YATR	2 cut(s)	150, 155
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	153
FauI	CCCGC	2 cut(s)	32, 56
Fnu4HI	GCNGC	3 cut(s)	95, 208, 296
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	95, 208, 296
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	3 cut(s)	95, 208, 296
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	35, 120
Hin1II	CATG	1 cut(s)	157
HpaII	CCGG	2 cut(s)	35, 120
Hpy188I	TCNGA	5 cut(s)	75, 138, 180, 365, 375
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	157
KflI	GGGWCCC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	67, 351
LmnI	GCTCC	3 cut(s)	60, 91, 192
LpnPI	CCDG	6 cut(s)	30, 48, 133, 263, 277, 295
Lsp1109I	GCAGC	3 cut(s)	106, 219, 307
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	309
MalI	GATC	2 cut(s)	69, 353
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	2 cut(s)	67, 351
MboII	GAAGA	4 cut(s)	38, 346, 349, 352
MflI	RGATCY	2 cut(s)	67, 351
MluCI	AATT	3 cut(s)	4, 274, 337
MnlI	CCTC	8 cut(s)	81, 97, 135, 138, 191, 194, 237, 257
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	55
MspI	CCGG	2 cut(s)	35, 120
MspR9I	CCNGG	3 cut(s)	35, 36, 121
NciI	CCSGG	3 cut(s)	35, 36, 121
NdeII	GATC	2 cut(s)	67, 351
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	4 cut(s)	69, 87, 224, 225
PkrI	GCNGC	3 cut(s)	96, 209, 297
Ppu21I	YACGTR	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
PspN4I	GGNNCC	4 cut(s)	69, 87, 224, 225
PspPI	GGNCC	2 cut(s)	122, 223
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	67, 351
RsaI	GTAC	3 cut(s)	14, 32, 172
RsaNI	GTAC	3 cut(s)	13, 31, 171
RseI	CAYNNNNRTG	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	95, 208, 296
Sau3AI	GATC	2 cut(s)	67, 351
Sau96I	GGNCC	2 cut(s)	122, 223
ScaI	AGTACT	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	35, 36, 121
SetI	ASST	6 cut(s)	212, 249, 287, 300, 312, 335
SinI	GGWCC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	55
SnaBI	TACGTA	1 cut(s)	310
Sse9I	AATT	3 cut(s)	4, 274, 337
SsiI	CCGC	3 cut(s)	39, 63, 92
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	33, 34, 119
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	4, 274, 337
TatI	WGTACW	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	24, 62
TseI	GCWGC	3 cut(s)	94, 207, 295
TspDTI	ATGAA	3 cut(s)	17, 39, 257
TspMI	CCCGGG	1 cut(s)	34
TspRI	CASTG	2 cut(s)	24, 62
VpaK11BI	GGWCC	1 cut(s)	223
XmaI	CCCGGG	1 cut(s)	34
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.