Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

8532704 .. 8534732

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1075400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGATTTCGCAAAGTTGCCACAAACAGGTGGGAGTTCTGCAACGACAAGTTCCGAAAGGGCGAAAAGGATCAGCTATGTGACATCCGTAGAAGAAAAGCATGGGCCACCAAACAACAGCCGATCAACAATGCAGTAACCCAACAAGCTGGAGCAGCTGCACTACTACCAAATGAGTTTGATGAAGACCAAAGGTCCTCCTCAACTTCATCATCATCCGAGTTCAGCTCTCTCGTCGACGAAAACAAAAGGCTGAAGCAGGAGAACGGGGTTTTGAGCTCGGAGCTGACGAGCATGAAACGGAAGTGCAAGGAGCTTCTTGACTTGGTGGCAAAGTATGGAGACTCGGCTGAGAAAGAGGAGGAAGATAATGAAAGAGTGCTAAAGTTGTTTGGAGTGAGATTGGAGGTTACTGGAGAGAGGGAGAGGAAGAGAAAGAGAGCTGAAATTAGTGCAACCGCAAACGTTTTACTATCTCAAGCATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

164

Amino Acids

18.58

Weight (kDa)

9.06

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	1 cut(s)	459
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	27
AhdI	GACNNNNNGTC	1 cut(s)	193
AluBI	AGCT	8 cut(s)	76, 149, 158, 228, 279, 286, 316, 443
AluI	AGCT	8 cut(s)	76, 149, 158, 228, 279, 286, 316, 443
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	155, 158
AspS9I	GGNCC	2 cut(s)	105, 195
AvaII	GGWCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	145, 167
BcoDI	GTCTC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	156, 159
BlsI	GCNGC	2 cut(s)	157, 160
Bme18I	GGWCC	1 cut(s)	195
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	105, 195
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	2 cut(s)	171, 435
BpuEI	CTTGAG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	418
BseGI	GGATG	2 cut(s)	84, 215
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	190, 374
BseXI	GCAGC	2 cut(s)	145, 167
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	70, 123
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	343
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	70, 123
Bst6I	CTCTTC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	84, 215
BstKTI	GATC	2 cut(s)	73, 126
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	70, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	145, 167
BstV2I	GAAGAC	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	84, 215
Cac8I	GCNNGC	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	105, 195
CviAII	CATG	3 cut(s)	102, 295, 483
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	72, 125
DpnII	GATC	2 cut(s)	70, 123
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	425
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	281
FaeI	CATG	3 cut(s)	105, 298, 486
FaiI	YATR	5 cut(s)	79, 103, 296, 339, 484
FatI	CATG	3 cut(s)	101, 294, 482
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	156, 159
FokI	GGATG	2 cut(s)	71, 202
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	156, 159
GluI	GCNGC	2 cut(s)	156, 159
GsuI	CTGGAG	2 cut(s)	171, 435
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	105, 298, 486
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	56, 220, 283
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	239, 242
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	42, 134, 161, 309, 455, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	3 cut(s)	105, 298, 486
Kzo9I	GATC	2 cut(s)	70, 123
LmnI	GCTCC	3 cut(s)	152, 283, 313
LpnPI	CCDG	4 cut(s)	13, 135, 245, 399
Lsp1109I	GCAGC	2 cut(s)	145, 167
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	3 cut(s)	80, 136, 409
MalI	GATC	2 cut(s)	72, 125
MboI	GATC	2 cut(s)	70, 123
MboII	GAAGA	4 cut(s)	105, 197, 377, 442
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	7 cut(s)	208, 211, 352, 355, 400, 414, 420
MspA1I	CMGCKG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	70, 123
NlaIII	CATG	3 cut(s)	105, 298, 486
NmeAIII	GCCGAG	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	486
PaeI	GCATGC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	157, 160
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	281
Psp1406I	AACGTT	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	105, 195
PspPPI	RGGWCCY	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	236
SatI	GCNGC	2 cut(s)	156, 159
Sau3AI	GATC	2 cut(s)	70, 123
Sau96I	GGNCC	2 cut(s)	105, 195
SchI	GAGTC	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	281
SgrDI	CGTCGACG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SphI	GCATGC	1 cut(s)	486
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	281
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	155, 158
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	198, 198, 311, 387
TspGWI	ACGGA	2 cut(s)	77, 316
VpaK11BI	GGWCC	1 cut(s)	195
XceI	RCATGY	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.