Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

3983165 .. 3983895

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGGGGCGCTGATAACAACAACCGCGACGAGATATCAGTGGCCGCCGGCGAACAACAGGCGGCTTCGGGTTCAAGTTCGGCTCCGGCGCCAGCACCCTTACTGAAATCCAACGCCCCGCCGCCGTTCCTGTGTAAGACGTACGACATGGTGGACGACCCGGGTACCGACCCGGTCGTGTCGTGGACCCCCACCAACAATAGCTTTGTGGTTTGGAAACCGCCGGAGTTCGCCAGGGACCTCCTTCCCAAGTACTTCAAGCACAATAACTTCTCTAGCTTTGTTAGGCAGTTGAACACCTACCAATCAGATGGAGCAGAAGTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

110

Amino Acids

11.75

Weight (kDa)

4.68

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	2 cut(s)	88, 164
AccII	CGCG	1 cut(s)	27
AciI	CCGC	6 cut(s)	25, 45, 62, 119, 122, 221
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	3 cut(s)	143, 166, 254
AgsI	TTSAA	3 cut(s)	75, 259, 295
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	204, 279
AluI	AGCT	2 cut(s)	204, 279
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	11, 91
AspS9I	GGNCC	2 cut(s)	186, 238
AsuC2I	CCSGG	3 cut(s)	161, 162, 173
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	186, 238
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BanI	GGYRCC	2 cut(s)	88, 164
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	235
BcnI	CCSGG	3 cut(s)	161, 162, 173
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	2 cut(s)	12, 92
BisI	GCNGC	3 cut(s)	45, 63, 122
BlsI	GCNGC	3 cut(s)	46, 64, 123
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	4 cut(s)	161, 162, 173, 235
Bme18I	GGWCC	2 cut(s)	186, 238
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	186, 238
BmiI	GGNNCC	5 cut(s)	84, 90, 166, 188, 239
BmrFI	CCNGG	4 cut(s)	161, 162, 173, 235
BpuMI	CCSGG	3 cut(s)	161, 162, 173
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	160, 234
BsaXI	ACNNNNNCTCC	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	160, 234
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	88, 164
BsiEI	CGRYCG	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	5 cut(s)	48, 86, 161, 173, 224
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	160
BspACI	CCGC	6 cut(s)	25, 45, 62, 119, 122, 221
BspANI	GGCC	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	5 cut(s)	84, 90, 166, 188, 239
BspT107I	GGYRCC	2 cut(s)	88, 164
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	160, 234
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	49, 93
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	2 cut(s)	12, 92
BstHHI	GCGC	2 cut(s)	11, 91
BstMCI	CGRYCG	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	4 cut(s)	159, 160, 171, 233
BstUI	CGCG	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	49, 93
CfoI	GCGC	2 cut(s)	11, 91
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	186, 238
Cfr9I	CCCGGG	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	142, 165, 253
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	5 cut(s)	44, 65, 83, 204, 279
CviKI_1	RGCY	5 cut(s)	44, 65, 83, 204, 279
CviQI	GTAC	3 cut(s)	142, 165, 253
DinI	GGCGCC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	186, 238
Eco88I	CYCGRG	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	45, 63, 122
Fsp4HI	GCNGC	3 cut(s)	45, 63, 122
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	10, 90
GluI	GCNGC	3 cut(s)	45, 63, 122
HaeII	RGCGCY	2 cut(s)	12, 92
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	5 cut(s)	48, 86, 161, 173, 224
HhaI	GCGC	2 cut(s)	11, 91
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	9, 89
HinP1I	GCGC	2 cut(s)	9, 89
HpaII	CCGG	5 cut(s)	48, 86, 161, 173, 224
Hpy166II	GTNNAC	2 cut(s)	154, 186
Hpy188I	TCNGA	1 cut(s)	310
Hpy8I	GTNNAC	2 cut(s)	154, 186
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	9, 89
KasI	GGCGCC	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	88, 314
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	140
Mly113I	GGCGCC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	251
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	1 cut(s)	47
MspI	CCGG	5 cut(s)	48, 86, 161, 173, 224
MspR9I	CCNGG	4 cut(s)	161, 162, 173, 235
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	27
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	3 cut(s)	161, 162, 173
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	5 cut(s)	84, 90, 166, 188, 239
PdiI	GCCGGC	1 cut(s)	49
Pfl23II	CGTACG	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	46, 64, 123
PluTI	GGCGCC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	5 cut(s)	84, 90, 166, 188, 239
PspPI	GGNCC	2 cut(s)	186, 238
PspPPI	RGGWCCY	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	3 cut(s)	143, 166, 254
RsaNI	GTAC	3 cut(s)	142, 165, 253
SatI	GCNGC	3 cut(s)	45, 63, 122
Sau96I	GGNCC	2 cut(s)	186, 238
ScaI	AGTACT	1 cut(s)	254
ScrFI	CCNGG	4 cut(s)	161, 162, 173, 235
SetI	ASST	5 cut(s)	143, 206, 243, 281, 302
SfoI	GGCGCC	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	186, 238
SmaI	CCCGGG	1 cut(s)	162
SsiI	CCGC	6 cut(s)	25, 45, 62, 119, 122, 221
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	4 cut(s)	159, 160, 171, 233
TaiI	ACGT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	3 cut(s)	47, 65, 124
TscAI	CASTG	1 cut(s)	45
TspMI	CCCGGG	1 cut(s)	160
TspRI	CASTG	1 cut(s)	45
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	186, 238
XmaI	CCCGGG	1 cut(s)	160
XspI	CTAG	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.