Rmu_sc0006065.1_g000026

Heat stress transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006065.1
OG0008651
Physical Location & Seq
Forward (+)
141864 .. 142145
282 bp
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UTR
Exon/CDS
Intron
Rmu_sc0006065.1_g000026.1.cds

Sequence Viewer

Length: 282 bp
atggaagacgcggcggcgatgatcaactcggcgacgagcatcccgccgtttctgaacaagacctacgacatggtcgacgacccctccaccgactacttggtctcatggaccgacgccaacaacagcttcgtcgtttggaacgacgcccagttcgccagggaccttttgcccaagttcttcaagcacaacaacttctccagcttcgtccgccagctcaatacttacgtgggtttcccctttcctcccttctttcccattttgatcttgtttgagttttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSF_DNA-bind

Protein Analysis

93

Amino Acids

10.74

Weight (kDa)

4.33

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 11, 14, 44, 208
AcyI GRCGYC 2 cut(s) 114, 144
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 3 cut(s) 126, 201, 214
AluI AGCT 3 cut(s) 126, 201, 214
Alw26I GTCTC 1 cut(s) 106
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspS9I GGNCC 2 cut(s) 108, 160
AvaII GGWCC 2 cut(s) 108, 160
BbsI GAAGAC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 157
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 106
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 2 cut(s) 108, 160
BmgT120I GGNCC 2 cut(s) 108, 160
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 2 cut(s) 114, 144
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 179, 209
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 21, 261
BspACI CCGC 4 cut(s) 11, 14, 44, 208
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 21, 261
BssNI GRCGYC 2 cut(s) 114, 144
Bst2UI CCWGG 1 cut(s) 157
BstACI GRCGYC 2 cut(s) 114, 144
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 212
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 2 cut(s) 24, 264
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 21, 261
BstMWI GCNNNNNNNGC 2 cut(s) 152, 207
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 108, 160
CseI GACGC 3 cut(s) 17, 122, 152
CviAII CATG 2 cut(s) 70, 105
CviJI RGCY 3 cut(s) 126, 201, 214
CviKI_1 RGCY 3 cut(s) 126, 201, 214
DpnI GATC 2 cut(s) 23, 263
DpnII GATC 2 cut(s) 21, 261
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 108, 160
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 155
FaeI CATG 2 cut(s) 73, 108
FaiI YATR 2 cut(s) 71, 106
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 69, 104
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 12, 15
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 12, 15
GluI GCNGC 2 cut(s) 12, 15
GsuI CTGGAG 1 cut(s) 181
HgaI GACGC 3 cut(s) 17, 122, 152
Hin1I GRCGYC 2 cut(s) 114, 144
Hin1II CATG 2 cut(s) 73, 108
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 5 cut(s) 37, 80, 116, 134, 146
HpyAV CCTTC 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 207
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 2 cut(s) 114, 144
Hsp92II CATG 2 cut(s) 73, 108
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 261
LpnPI CCDG 5 cut(s) 142, 161, 169, 211, 224
LweI GCATC 1 cut(s) 48
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 23, 263
MboI GATC 2 cut(s) 21, 261
MboII GAAGA 2 cut(s) 17, 169
MnlI CCTC 2 cut(s) 94, 252
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 152, 207
NdeII GATC 2 cut(s) 21, 261
NlaIII CATG 2 cut(s) 73, 108
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 8
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 138
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 13, 16
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 108, 160
PspPPI RGGWCCY 1 cut(s) 160
PsrI GAACNNNNNNTAC 2 cut(s) 47, 79
PsyI GACNNNGTC 1 cut(s) 71
SalI GTCGAC 1 cut(s) 74
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 2 cut(s) 21, 261
Sau96I GGNCC 2 cut(s) 108, 160
ScrFI CCNGG 1 cut(s) 157
SetI ASST 6 cut(s) 65, 128, 165, 203, 216, 228
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 2 cut(s) 108, 160
SsiI CCGC 4 cut(s) 11, 14, 44, 208
StyD4I CCNGG 1 cut(s) 155
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 75
TaqII GACCGA 1 cut(s) 125
TauI GCSGC 2 cut(s) 14, 17
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 108, 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.