Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

22819184 .. 22822485

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG251200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCGGTGCTAATAGCAACGCCGGCGAGGCAGCAGCCGGCGGTGGGGCCCAGCCGGCTCAGGCTGCTGCGGCGGCGGCGGGGGGAGGTTTGGAATCGGCTCCGGCGCCGACGCCGTTACTGAACTCGAACGCGCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTGGACGACCCGGCGACCGACCCGATTGTGTCGTGGAGCGCCACCAACAACAGCTTCGTGGTTTGGAACCCGCCGGAGTTCGCCAGGGACCTTCTGCCCAAGTACTTCAAGCACAATAACTTCTCCAGTTTCGTCAGGCAGTTGAACACTTATTTCTCTTTGCCTTTTGTTATGGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

116

Amino Acids

12.12

Weight (kDa)

4.7

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	49 - 107	2.5e-21	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	134
AciI	CCGC	8 cut(s)	42, 71, 74, 77, 80, 137, 140, 239
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	107, 113
AfaI	GTAC	2 cut(s)	161, 272
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	277, 313
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
AoxI	GGCC	2 cut(s)	3, 48
ApaI	GGGCCC	1 cut(s)	52
ApeKI	GCWGC	4 cut(s)	32, 35, 65, 68
AspLEI	GCGC	3 cut(s)	109, 136, 209
AspS9I	GGNCC	3 cut(s)	48, 49, 256
AsuC2I	CCSGG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	52
BbvI	GCAGC	4 cut(s)	44, 47, 52, 55
BceAI	ACGGC	2 cut(s)	100, 127
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	179
BfoI	RGCGCY	2 cut(s)	110, 210
BglI	GCCNNNNNGGC	2 cut(s)	29, 56
BisI	GCNGC	9 cut(s)	33, 36, 66, 69, 72, 75, 78, 137, 140
BlsI	GCNGC	9 cut(s)	34, 37, 67, 70, 73, 76, 79, 138, 141
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	179, 253
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	48, 49, 256
BmiI	GGNNCC	6 cut(s)	49, 50, 102, 108, 236, 257
BmrFI	CCNGG	2 cut(s)	179, 253
BpmI	CTGGAG	1 cut(s)	277
Bpu10I	CCTNAGC	2 cut(s)	60, 149
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	2 cut(s)	107, 113
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	4 cut(s)	5, 23, 38, 55
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	74, 140
BseNI	ACTGG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	44, 47, 52, 55
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	5, 50
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	7 cut(s)	6, 24, 39, 56, 104, 179, 242
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	5, 50
Bsp120I	GGGCCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	52
BspACI	CCGC	8 cut(s)	42, 71, 74, 77, 80, 137, 140, 239
BspANI	GGCC	2 cut(s)	5, 50
BspCNI	CTCAG	2 cut(s)	73, 141
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	6 cut(s)	49, 50, 102, 108, 236, 257
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	4 cut(s)	5, 23, 38, 55
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	4 cut(s)	5, 23, 38, 55
BssECI	CCNNGG	1 cut(s)	252
BssNI	GRCGYC	2 cut(s)	107, 113
Bst2UI	CCWGG	1 cut(s)	253
BstACI	GRCGYC	2 cut(s)	107, 113
BstC8I	GCNNGC	3 cut(s)	25, 40, 57
BstDEI	CTNAG	2 cut(s)	60, 149
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	2 cut(s)	110, 210
BstHHI	GCGC	3 cut(s)	109, 136, 209
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 29, 56, 65, 71, 74, 77
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	177, 251
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	44, 47, 52, 55
BsuRI	GGCC	2 cut(s)	5, 50
Cac8I	GCNNGC	3 cut(s)	25, 40, 57
CfoI	GCGC	3 cut(s)	109, 136, 209
Cfr10I	RCCGGY	4 cut(s)	5, 23, 38, 55
Cfr13I	GGNCC	3 cut(s)	48, 49, 256
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	160, 271
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	8 cut(s)	5, 38, 50, 55, 59, 65, 101, 222
CviKI_1	RGCY	8 cut(s)	5, 38, 50, 55, 59, 65, 101, 222
CviQI	GTAC	2 cut(s)	160, 271
DdeI	CTNAG	2 cut(s)	60, 149
DinI	GGCGCC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	256
EcoO109I	RGGNCCY	2 cut(s)	48, 256
EcoRII	CCWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
FaeI	CATG	1 cut(s)	169
FaiI	YATR	2 cut(s)	167, 341
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	165
FauI	CCCGC	2 cut(s)	73, 246
Fnu4HI	GCNGC	9 cut(s)	33, 36, 66, 69, 72, 75, 78, 137, 140
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	9 cut(s)	33, 36, 66, 69, 72, 75, 78, 137, 140
GlaI	GCGC	3 cut(s)	108, 135, 208
GluI	GCNGC	9 cut(s)	33, 36, 66, 69, 72, 75, 78, 137, 140
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	277
HaeII	RGCGCY	2 cut(s)	110, 210
HaeIII	GGCC	2 cut(s)	5, 50
HapII	CCGG	7 cut(s)	6, 24, 39, 56, 104, 179, 242
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	3 cut(s)	109, 136, 209
Hin1I	GRCGYC	2 cut(s)	107, 113
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	3 cut(s)	107, 134, 207
HinP1I	GCGC	3 cut(s)	107, 134, 207
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	7 cut(s)	6, 24, 39, 56, 104, 179, 242
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 29, 56, 65, 71, 74, 77
HpyF3I	CTNAG	2 cut(s)	60, 149
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	2 cut(s)	107, 113
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	3 cut(s)	107, 134, 207
KasI	GGCGCC	1 cut(s)	106
KroI	GCCGGC	3 cut(s)	23, 38, 55
KroNI	GCCGGC	3 cut(s)	25, 40, 57
LmnI	GCTCC	2 cut(s)	106, 204
Lsp1109I	GCAGC	4 cut(s)	44, 47, 52, 55
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	52
Mly113I	GGCGCC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	22, 80
MreI	CGCCGGCG	1 cut(s)	23
MroNI	GCCGGC	3 cut(s)	23, 38, 55
MseI	TTAA	1 cut(s)	349
MspI	CCGG	7 cut(s)	6, 24, 39, 56, 104, 179, 242
MspR9I	CCNGG	2 cut(s)	179, 253
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	7 cut(s)	24, 29, 56, 65, 71, 74, 77
NaeI	GCCGGC	3 cut(s)	25, 40, 57
NarI	GGCGCC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	179
NgoMIV	GCCGGC	3 cut(s)	23, 38, 55
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	6 cut(s)	49, 50, 102, 108, 236, 257
PdiI	GCCGGC	3 cut(s)	25, 40, 57
PfeI	GAWTC	1 cut(s)	95
Pfl23II	CGTACG	1 cut(s)	159
PkrI	GCNGC	9 cut(s)	34, 37, 67, 70, 73, 76, 79, 138, 141
PluTI	GGCGCC	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	251
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	6 cut(s)	49, 50, 102, 108, 236, 257
PspOMI	GGGCCC	1 cut(s)	48
PspPI	GGNCC	3 cut(s)	48, 49, 256
PspPPI	RGGWCCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	161, 272
RsaNI	GTAC	2 cut(s)	160, 271
SaqAI	TTAA	1 cut(s)	349
SatI	GCNGC	9 cut(s)	33, 36, 66, 69, 72, 75, 78, 137, 140
Sau96I	GGNCC	3 cut(s)	48, 49, 256
ScaI	AGTACT	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	179, 253
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	4 cut(s)	91, 161, 224, 261
SfoI	GGCGCC	1 cut(s)	108
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	256
SsiI	CCGC	8 cut(s)	42, 71, 74, 77, 80, 137, 140, 239
SspDI	GGCGCC	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	177, 251
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	128
TaqII	GACCGA	1 cut(s)	200
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	5 cut(s)	74, 77, 80, 139, 142
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TseI	GCWGC	4 cut(s)	32, 35, 65, 68
VpaK11BI	GGWCC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.