Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008651

Physical Location & Seq

Genomic Coordinates Forward (+)

17545390 .. 17546948

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0199100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAATTATACGGTCCTTAGAACTCCGTCTTTTGCCTTTTCCTCTAATCTCAAGTACTTGCAGTTGACAAATGTTTATATAGAAGATGACAAGTTTTTCAAATGGATCTCATGTTCCTGCAAGTGCATTGGGGATTTGCATCTTAGTCATGTTCTTGGGATAGAGAACGTCACCATTTTCCGGTCATCTTTGGAAAGGTTTAGTTTGATTTGTGGTCCTCTGGATCATACGTGCCATTTAAATATCTCAAGTGAGAAACTTGTGGACATAGATCTTTACTGGACATTTGATTCACCTAGCAACAAATCCTTAACTATTGATGCCCCAAATCTTAAATCTTTCAAATGGATTGGGAATTTGATGAAATACCCAAATCTAGGAAAACTAGAATGCTTAGAAACAGCTGCACTTTTTTTGAAGCCTGAAGTAGAGGACTTAAACAAGGTACATGAGGTTCTTTGGAGTTTACGCAGGGCTCCAGGTCTTTTGCTAAATGACGTGGCGATTAAGGCTTCATTTATGGATGGATCTGTGCCAGCTTCATTGTATGATACTTCCGGTTTGTGTTTGATTATCGAAAGCTTTGTTGATGAGCTGGTCCCAGCATTGGTCTGTGTCTTCAGAAGAACACCTAATTTGAGTTTGTTATGCATAAAGTCTAAACCACCACATAACCCTCAATCTAATACATTCGGGTTTAATATGGAATACTGGAAGCTGCAAGAACTTGCTTTTACTAATCAGCTTAAGCATGTGACTATAGAGCTTTGCAGTGGGTCTAATGGAATTGATCTGACAAAGTATATGCTCAAGTATGCTCTCAATATGCAGAGAATGGTTGTGATTTGTTTGCCCATAGATTTGAAGAAGGTTACAAGGAAACTAAAGAAAATCAAGATGATTTCCAATGCTGTACTTGTTATTCAGAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

311

Amino Acids

35.38

Weight (kDa)

8.76

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41690
fragaria_vesca	FvH4_6g24120
malus_domestica	MD12G1079300.v1.1 MD14G1075200.v1.1 MD14G1075400.v1.1
prunus_persica	Prupe.7G056700_v2.0.a1
pyrus_communis	pycom06g03160 pycom12g06650 pycom14g06400
rosa_chinensis	RchiOBHm_Chr3g0482741
rosa_laevigata	RLG00000023332
rosa_multiflora	Rmu_sc0003927.1_g000001 Rmu_sc0006065.1_g000026 Rmu_sc0011602.1_g000003 Rmu_sc0012200.1_g000006
rosa_roxburghii	Rroxscaffold_6G00399000
rosa_rugosa	Rorug03G0199100
rosa_samantha	Rh3AG249600 Rh3BG285800 Rh3CG283600 Rh3DG279400 Rh7BG251200
rosa_wichuraiana	Rw3G022570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	113, 231, 535
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	2 cut(s)	444, 604
AfaI	GTAC	3 cut(s)	56, 447, 915
AfiI	CCNNNNNNNGG	3 cut(s)	180, 377, 607
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	4 cut(s)	100, 343, 418, 865
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	478
AloI	GAACNNNNNNTCC	2 cut(s)	97, 129
AluBI	AGCT	7 cut(s)	404, 539, 582, 595, 718, 745, 766
AluI	AGCT	7 cut(s)	404, 539, 582, 595, 718, 745, 766
AlwI	GGATC	3 cut(s)	113, 231, 535
ApeKI	GCWGC	2 cut(s)	404, 718
ApoI	RAATTY	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	13, 215, 598
AsuHPI	GGTGA	2 cut(s)	163, 285
AvaII	GGWCC	3 cut(s)	13, 215, 598
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	610
BbvI	GCAGC	2 cut(s)	391, 705
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	480
BfaI	CTAG	3 cut(s)	297, 377, 386
BfmI	CTRYAG	1 cut(s)	759
BfrI	CTTAAG	1 cut(s)	746
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	2 cut(s)	405, 719
BlsI	GCNGC	2 cut(s)	406, 720
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	3 cut(s)	13, 215, 598
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	3 cut(s)	13, 215, 598
BmiI	GGNNCC	2 cut(s)	477, 600
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	148, 310
BpiI	GAAGAC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	3 cut(s)	35, 232, 794
BsaAI	YACGTR	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	138
BsaWI	WCCGGW	2 cut(s)	180, 557
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 377, 607
Bse1I	ACTGG	2 cut(s)	284, 716
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	529
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	180, 377, 607
BseNI	ACTGG	2 cut(s)	284, 716
BseXI	GCAGC	2 cut(s)	391, 705
BseYI	CCCAGC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	181, 558
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	180, 377, 607
BsmFI	GGGAC	1 cut(s)	584
BsmI	GAATGC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	105, 223, 271, 527, 790
BspLI	GGNNCC	2 cut(s)	477, 600
BspPI	GGATC	3 cut(s)	113, 231, 535
BspTI	CTTAAG	1 cut(s)	746
BsrI	ACTGG	2 cut(s)	284, 716
BssMI	GATC	5 cut(s)	105, 223, 271, 527, 790
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	746
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	3 cut(s)	17, 143, 394
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	5 cut(s)	108, 226, 274, 530, 793
BstMBI	GATC	5 cut(s)	105, 223, 271, 527, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	2 cut(s)	391, 705
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	3 cut(s)	105, 271, 527
BstYI	RGATCY	3 cut(s)	105, 271, 527
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	537
Cfr13I	GGNCC	3 cut(s)	13, 215, 598
Csp6I	GTAC	3 cut(s)	55, 446, 914
CviAII	CATG	4 cut(s)	111, 149, 449, 752
CviQI	GTAC	3 cut(s)	55, 446, 914
DdeI	CTNAG	3 cut(s)	17, 143, 394
DpnI	GATC	5 cut(s)	107, 225, 273, 529, 792
DpnII	GATC	5 cut(s)	105, 223, 271, 527, 790
DraI	TTTAAA	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	13, 215, 598
Eco57I	CTGAAG	2 cut(s)	444, 604
EcoRII	CCWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	4 cut(s)	114, 152, 452, 755
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	4 cut(s)	110, 148, 448, 751
Fnu4HI	GCNGC	2 cut(s)	405, 719
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	2 cut(s)	405, 719
FspBI	CTAG	3 cut(s)	297, 377, 386
GluI	GCNGC	2 cut(s)	405, 719
GsaI	CCCAGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	462
HapII	CCGG	2 cut(s)	181, 558
Hin1II	CATG	4 cut(s)	114, 152, 452, 755
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	181, 558
HphI	GGTGA	2 cut(s)	163, 285
Hpy166II	GTNNAC	3 cut(s)	66, 265, 467
Hpy188I	TCNGA	3 cut(s)	623, 795, 927
Hpy188III	TCNNGA	2 cut(s)	221, 895
Hpy8I	GTNNAC	3 cut(s)	66, 265, 467
HpyAV	CCTTC	1 cut(s)	862
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	3 cut(s)	168, 230, 498
HpyCH4V	TGCA	9 cut(s)	61, 120, 126, 139, 407, 651, 721, 771, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	3 cut(s)	17, 143, 394
HpySE526I	ACGT	3 cut(s)	168, 230, 498
Hsp92II	CATG	4 cut(s)	114, 152, 452, 755
Kzo9I	GATC	5 cut(s)	105, 223, 271, 527, 790
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	2 cut(s)	391, 705
LweI	GCATC	2 cut(s)	148, 310
MaeI	CTAG	3 cut(s)	297, 377, 386
MaeII	ACGT	3 cut(s)	168, 230, 498
MaeIII	GTNAC	3 cut(s)	169, 754, 871
MalI	GATC	5 cut(s)	107, 225, 273, 529, 792
MboI	GATC	5 cut(s)	105, 223, 271, 527, 790
MboII	GAAGA	4 cut(s)	95, 610, 636, 877
MflI	RGATCY	3 cut(s)	105, 271, 527
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	4 cut(s)	4, 355, 634, 786
MnlI	CCTC	5 cut(s)	52, 228, 424, 445, 687
Mph1103I	ATGCAT	1 cut(s)	653
MseI	TTAA	7 cut(s)	239, 311, 333, 437, 507, 699, 747
MspA1I	CMGCKG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	2 cut(s)	181, 558
MspR9I	CCNGG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	5 cut(s)	105, 223, 271, 527, 790
NlaIII	CATG	4 cut(s)	114, 152, 452, 755
NlaIV	GGNNCC	2 cut(s)	477, 600
NmuCI	GTSAC	2 cut(s)	169, 754
NsiI	ATGCAT	1 cut(s)	653
NspI	RCATGY	1 cut(s)	755
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	406, 720
Ppu21I	YACGTR	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	478
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	477, 600
PspPI	GGNCC	3 cut(s)	13, 215, 598
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PsuI	RGATCY	3 cut(s)	105, 271, 527
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	3 cut(s)	56, 447, 915
RsaNI	GTAC	3 cut(s)	55, 446, 914
SaqAI	TTAA	7 cut(s)	239, 311, 333, 437, 507, 699, 747
SatI	GCNGC	2 cut(s)	405, 719
Sau3AI	GATC	5 cut(s)	105, 223, 271, 527, 790
Sau96I	GGNCC	3 cut(s)	13, 215, 598
ScaI	AGTACT	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	148, 310
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	3 cut(s)	13, 215, 598
SmiI	ATTTAAAT	1 cut(s)	240
SmlI	CTYRAG	4 cut(s)	50, 247, 746, 809
SmoI	CTYRAG	4 cut(s)	50, 247, 746, 809
Sse9I	AATT	4 cut(s)	4, 355, 634, 786
SspMI	CTAG	3 cut(s)	297, 377, 386
StyD4I	CCNGG	1 cut(s)	478
SwaI	ATTTAAAT	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	3 cut(s)	171, 233, 501
TaqI	TCGA	1 cut(s)	576
TasI	AATT	4 cut(s)	4, 355, 634, 786
TatI	WGTACW	2 cut(s)	54, 913
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	7 cut(s)	239, 311, 333, 437, 507, 699, 747
Tru9I	TTAA	7 cut(s)	239, 311, 333, 437, 507, 699, 747
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	2 cut(s)	169, 754
TseI	GCWGC	2 cut(s)	404, 718
Tsp45I	GTSAC	2 cut(s)	169, 754
TspDTI	ATGAA	4 cut(s)	17, 377, 504, 531
TspGWI	ACGGA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	3 cut(s)	13, 215, 598
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	3 cut(s)	297, 377, 386
ZrmI	AGTACT	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.