AT2G42040

Has 154 Blast hits to 154 proteins in 12 species Archae - 0

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011978
Physical Location & Seq
Forward (+)
17543005 .. 17545532
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42040.1

Sequence Viewer

Length: 810 bp
ATGAGGATCCGGAAACGACAAGTGCCTCTTCCTTTATCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCTCACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAAAGACGGCGGTGATGATTTTGGTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCGCAGATTTCTGATCGGCTTATTCAAAGAGATTTGATAAAGAAGAAGGAGGAGGTCAAGGCTTTGGATGATGATAATGGTGATGTAGACGTCAAGAGTCGTACTGATGCATCGGGCAGCAAGAATGTTAATCCCCGAGGAGAATCCGTCTCTTCAATACAAGTTGTCGAGAAGAATGAAAAGGTTGTGTCTTTGAGGAAGAGAAGAGGCTTTATCAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTGGAGGCCGTATTAATAAAGGGAAAAAGAAAGCGAAAAAGAGCGGTGGTGGGTTAGAGGAAGGATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTGGTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTGGTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTAAAGCTTGGCATGGTAAAGGCACGTTCAATAAGTAGTTTGCTTGGACAAACCAGCACTAGTGGTGGTACTAGTGGTGATGTTGATCAGGGTGAGATAAGTGCACCTGCTGATCAGTTCGCTGCATGTGATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

269

Amino Acids

29.19

Weight (kDa)

9.59

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 165 - 204 2.8e-15 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42040
fragaria_vesca FvH4_6g22070
malus_domestica MD12G1056100.v1.1 MD14G1055800.v1.1
prunus_persica Prupe.7G079000_v2.0.a1 Prupe.7G079000_v2.0.a1
pyrus_communis pycom12g04900 pycom14g04590
rosa_chinensis RchiOBHm_Chr3g0479411
rosa_laevigata RLG00000023578
rosa_multiflora Rmu_sc0000107.1_g000002
rosa_roxburghii Rroxscaffold_6G00402300
rosa_rugosa Rorug03G0175000
rosa_samantha Rh3AG226200 Rh3BG258900 Rh3BG259000 Rh3CG255100 Rh3DG250600
rosa_wichuraiana Rw3G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AarI CACCTGC 1 cut(s) 787
AatII GACGTC 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 787
AccBSI CCGCTC 2 cut(s) 81, 477
AccI GTMKAC 1 cut(s) 258
AccII CGCG 2 cut(s) 98, 111
AccIII TCCGGA 1 cut(s) 9
AclWI GGATC 2 cut(s) 14, 505
AcoI YGGCCR 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 274, 742
AgsI TTSAA 3 cut(s) 197, 327, 702
AhlI ACTAGT 2 cut(s) 731, 743
AluBI AGCT 3 cut(s) 154, 425, 679
AluI AGCT 3 cut(s) 154, 425, 679
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 2 cut(s) 45, 325
Alw44I GTGCAC 1 cut(s) 774
AlwI GGATC 2 cut(s) 14, 505
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 2 cut(s) 90, 439
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 3 cut(s) 288, 507, 794
AseI ATTAAT 1 cut(s) 447
AsuHPI GGTGA 5 cut(s) 75, 143, 263, 761, 776
AvaI CYCGRG 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 778
BamHI GGATCC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 3 cut(s) 300, 519, 781
BccI CCATC 1 cut(s) 522
BceAI ACGGC 5 cut(s) 105, 142, 154, 426, 495
BclI TGATCA 2 cut(s) 757, 784
BcoDI GTCTC 2 cut(s) 45, 325
BcuI ACTAGT 2 cut(s) 731, 743
BfaI CTAG 3 cut(s) 426, 732, 744
BfuAI ACCTGC 1 cut(s) 787
BglII AGATCT 1 cut(s) 64
BisI GCNGC 5 cut(s) 167, 289, 508, 631, 795
BlsI GCNGC 5 cut(s) 168, 290, 509, 632, 796
BmeT110I CYCGRG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 8
BmsI GCATC 3 cut(s) 268, 290, 583
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 523, 553
Bse1I ACTGG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 244, 533
BseJI GATNNNNATC 1 cut(s) 756
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 236, 324
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 3 cut(s) 300, 519, 781
BsgI GTGCAG 1 cut(s) 526
Bsh1236I CGCG 2 cut(s) 98, 111
BshFI GGCC 2 cut(s) 92, 441
BsiHKAI GWGCWC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 2 cut(s) 45, 325
BsmBI CGTCTC 2 cut(s) 45, 325
BsnI GGCC 2 cut(s) 92, 441
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 778
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 6 cut(s) 6, 64, 184, 497, 757, 784
BspANI GGCC 2 cut(s) 92, 441
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 2 cut(s) 98, 111
BspLI GGNNCC 1 cut(s) 8
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 2 cut(s) 14, 505
BsrBI CCGCTC 2 cut(s) 81, 477
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 6 cut(s) 6, 64, 184, 497, 757, 784
BssNI GRCGYC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 504, 521
Bst6I CTCTTC 6 cut(s) 33, 153, 328, 365, 370, 662
BstACI GRCGYC 1 cut(s) 261
BstF5I GGATG 2 cut(s) 244, 533
BstFNI CGCG 2 cut(s) 98, 111
BstKTI GATC 6 cut(s) 9, 67, 187, 500, 760, 787
BstMAI GTCTC 2 cut(s) 45, 325
BstMBI GATC 6 cut(s) 6, 64, 184, 497, 757, 784
BstMWI GCNNNNNNNGC 3 cut(s) 166, 172, 438
BstNSI RCATGY 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 778
BstUI CGCG 2 cut(s) 98, 111
BstV1I GCAGC 3 cut(s) 300, 519, 781
BstX2I RGATCY 2 cut(s) 6, 64
BstYI RGATCY 2 cut(s) 6, 64
BsuRI GGCC 2 cut(s) 92, 441
BtsCI GGATG 2 cut(s) 244, 533
BveI ACCTGC 1 cut(s) 787
Csp6I GTAC 2 cut(s) 273, 741
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 3 cut(s) 604, 685, 798
CviJI RGCY 9 cut(s) 92, 154, 190, 233, 381, 425, 441, 510, 679
CviKI_1 RGCY 9 cut(s) 92, 154, 190, 233, 381, 425, 441, 510, 679
CviQI GTAC 2 cut(s) 273, 741
DpnI GATC 6 cut(s) 8, 66, 186, 499, 759, 786
DpnII GATC 6 cut(s) 6, 64, 184, 497, 757, 784
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 6 cut(s) 33, 153, 328, 365, 370, 662
EarI CTCTTC 6 cut(s) 33, 153, 328, 365, 370, 662
EciI GGCGGA 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 283
Esp3I CGTCTC 2 cut(s) 45, 325
FaeI CATG 3 cut(s) 607, 688, 801
FaiI YATR 4 cut(s) 120, 605, 686, 799
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 3 cut(s) 603, 684, 797
FbaI TGATCA 2 cut(s) 757, 784
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 5 cut(s) 167, 289, 508, 631, 795
FokI GGATG 2 cut(s) 251, 540
Fsp4HI GCNGC 5 cut(s) 167, 289, 508, 631, 795
FspBI CTAG 3 cut(s) 426, 732, 744
GluI GCNGC 5 cut(s) 167, 289, 508, 631, 795
HaeIII GGCC 2 cut(s) 92, 441
HapII CCGG 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 3 cut(s) 607, 688, 801
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 2 cut(s) 268, 314
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 1 cut(s) 10
HphI GGTGA 5 cut(s) 75, 143, 263, 761, 776
Hpy166II GTNNAC 3 cut(s) 259, 517, 776
Hpy188I TCNGA 2 cut(s) 64, 184
Hpy188III TCNNGA 3 cut(s) 10, 265, 340
Hpy8I GTNNAC 3 cut(s) 259, 517, 776
Hpy99I CGWCG 2 cut(s) 91, 175
HpyAV CCTTC 3 cut(s) 211, 488, 585
HpyCH4III ACNGT 2 cut(s) 504, 521
HpyCH4IV ACGT 2 cut(s) 261, 697
HpyCH4V TGCA 4 cut(s) 281, 507, 776, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 166, 172, 438
HpySE526I ACGT 2 cut(s) 261, 697
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 3 cut(s) 607, 688, 801
Kpn2I TCCGGA 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 757, 784
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 6 cut(s) 6, 64, 184, 497, 757, 784
LmnI GCTCC 1 cut(s) 600
LpnPI CCDG 5 cut(s) 23, 63, 739, 746, 792
Lsp1109I GCAGC 3 cut(s) 300, 519, 781
LweI GCATC 3 cut(s) 268, 290, 583
MaeI CTAG 3 cut(s) 426, 732, 744
MaeII ACGT 2 cut(s) 261, 697
MalI GATC 6 cut(s) 8, 66, 186, 499, 759, 786
MbiI CCGCTC 2 cut(s) 81, 477
MboI GATC 6 cut(s) 6, 64, 184, 497, 757, 784
MflI RGATCY 2 cut(s) 6, 64
MhlI GDGCHC 1 cut(s) 778
MlyI GAGTC 1 cut(s) 277
Mph1103I ATGCAT 1 cut(s) 283
MroI TCCGGA 1 cut(s) 9
MseI TTAA 4 cut(s) 75, 300, 447, 516
MspI CCGG 1 cut(s) 10
MvnI CGCG 2 cut(s) 98, 111
MwoI GCNNNNNNNGC 3 cut(s) 166, 172, 438
NdeII GATC 6 cut(s) 6, 64, 184, 497, 757, 784
NlaIII CATG 3 cut(s) 607, 688, 801
NlaIV GGNNCC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 801
PaqCI CACCTGC 1 cut(s) 787
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 508
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 5 cut(s) 168, 290, 509, 632, 796
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 8
PsuI RGATCY 2 cut(s) 6, 64
RsaI GTAC 2 cut(s) 274, 742
RsaNI GTAC 2 cut(s) 273, 741
SaqAI TTAA 4 cut(s) 75, 300, 447, 516
SatI GCNGC 5 cut(s) 167, 289, 508, 631, 795
Sau3AI GATC 6 cut(s) 6, 64, 184, 497, 757, 784
SchI GAGTC 1 cut(s) 277
SduI GDGCHC 1 cut(s) 778
SetI ASST 8 cut(s) 156, 228, 264, 357, 427, 681, 700, 781
SfaNI GCATC 3 cut(s) 268, 290, 583
SpeI ACTAGT 2 cut(s) 731, 743
SspMI CTAG 3 cut(s) 426, 732, 744
TaaI ACNGT 2 cut(s) 504, 521
TaiI ACGT 2 cut(s) 264, 700
TaqI TCGA 1 cut(s) 339
TauI GCSGC 2 cut(s) 169, 633
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 4 cut(s) 75, 300, 447, 516
Tru9I TTAA 4 cut(s) 75, 300, 447, 516
TseI GCWGC 3 cut(s) 288, 507, 794
TspDTI ATGAA 3 cut(s) 363, 432, 620
TspGWI ACGGA 1 cut(s) 307
VneI GTGCAC 1 cut(s) 774
VspI ATTAAT 1 cut(s) 447
XceI RCATGY 1 cut(s) 801
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 3 cut(s) 426, 732, 744
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.