Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000107.1

Orthogroup ID

OG0011978

Physical Location & Seq

Genomic Coordinates Forward (+)

15309 .. 17090

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000107.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgaggatccggaaaagacaggtgccgttgcccctctcttctctctctcccgtgcctctaccagatccccacctcctcaacctcaaccactgctcatcatcacctcccctggtgcaacaacaacaacaacaacaacaacgtatccaccacgatccaaaaccctcccaacgacttgatcatgtgggccctctccctcatcctcagccgtctgatcatcacaatcgcccccggccgattggagcagcgagcgacgacggctgtgatttttccggggagctgaagaagagaaattactgctcggagacattgaaagggggagacgaagagggatcaagagatcaggcagaggagaagggtaatgataccaggaagggaagcacattgggtgcagaaactgtatctgggtttccttcagaatcaagttcttctcatcgagttcttgggagatggtttgagggagagaaagcgttcccattcaagaagcgaagagggagcttcggggaggcgacgagaatggagaaggagaagaaattaacgcagaccaagatggaccagaaatgtgatggtcaacaaagtgatgataagaagcaagaagatagagtaattacgaaagaaagcctcgaccatactgttggtagtggtacgagtccaaagaagagagcaagaggcaatgcaataatggagggatcgaggtgcagtcgagttaacggaagaggatggaggtgttgtcaacagacacttgtcgggtactctctttgcgagcatcacttgggcaaaggaaggcttaggagcttgaacagcgtccgaagtcgctcttttgcgagttctgttggatccattgagaccaagtccaagcaattatcaaaaccctcgtgtttggagctgccaaaggaagaagagcgtaaacctgatatgctactagatgtcaatcatcatggtgaagatcaacgacgtgaaaatgaatacggtgaagagaaaaagccgttggtggttacgaagaagagaatgaaactcggtattgtaaaggcacgatccatgagcagcttgcttgggcaaacgaacagtgcaactgcagtggatgatgagaataacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRC

Protein Analysis

365

Amino Acids

40.84

Weight (kDa)

9.41

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42040
fragaria_vesca	FvH4_6g22070
malus_domestica	MD12G1056100.v1.1 MD14G1055800.v1.1
prunus_persica	Prupe.7G079000_v2.0.a1 Prupe.7G079000_v2.0.a1
pyrus_communis	pycom12g04900 pycom14g04590
rosa_chinensis	RchiOBHm_Chr3g0479411
rosa_laevigata	RLG00000023578
rosa_multiflora	Rmu_sc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_6G00402300
rosa_rugosa	Rorug03G0175000
rosa_samantha	Rh3AG226200 Rh3BG258900 Rh3BG259000 Rh3CG255100 Rh3DG250600
rosa_wichuraiana	Rw3G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	9
AclWI	GGATC	8 cut(s)	14, 59, 146, 337, 694, 828, 841, 1026
AcoI	YGGCCR	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	299, 396
AfaI	GTAC	2 cut(s)	643, 749
AgsI	TTSAA	3 cut(s)	310, 478, 796
AjiI	CACGTC	1 cut(s)	953
AjnI	CCWGG	2 cut(s)	108, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
AluBI	AGCT	5 cut(s)	277, 495, 792, 883, 1044
AluI	AGCT	5 cut(s)	277, 495, 792, 883, 1044
Alw26I	GTCTC	3 cut(s)	296, 312, 836
AlwI	GGATC	8 cut(s)	14, 59, 146, 337, 694, 828, 841, 1026
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	2 cut(s)	184, 230
ApaI	GGGCCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	242, 883, 1041
Asp700I	GAANNNNTTC	1 cut(s)	467
AspS9I	GGNCC	3 cut(s)	184, 185, 550
AsuC2I	CCSGG	2 cut(s)	229, 271
AsuHPI	GGTGA	3 cut(s)	93, 950, 980
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	188
BamHI	GGATCC	2 cut(s)	6, 833
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	1 cut(s)	871
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	254, 870, 1053
BccI	CCATC	4 cut(s)	441, 541, 557, 711
BceAI	ACGGC	4 cut(s)	10, 190, 271, 967
BciT130I	CCWGG	2 cut(s)	110, 367
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	2 cut(s)	175, 211
BcnI	CCSGG	2 cut(s)	229, 271
BcoDI	GTCTC	3 cut(s)	296, 312, 836
BfaI	CTAG	1 cut(s)	920
BfmI	CTRYAG	1 cut(s)	1071
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	243, 884, 1042
BlsI	GCNGC	3 cut(s)	244, 885, 1043
Bme1390I	CCNGG	4 cut(s)	110, 229, 271, 367
Bme18I	GGWCC	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	3 cut(s)	184, 185, 550
BmiI	GGNNCC	4 cut(s)	8, 24, 186, 835
BmrFI	CCNGG	4 cut(s)	110, 229, 271, 367
BmsI	GCATC	1 cut(s)	772
BoxI	GACNNNNGTC	1 cut(s)	740
Bpu10I	CCTNAGC	2 cut(s)	201, 785
BpuMI	CCSGG	2 cut(s)	229, 271
BsaBI	GATNNNNATC	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	3 cut(s)	108, 227, 270
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bse3DI	GCAATG	1 cut(s)	676
Bse8I	GATNNNNATC	1 cut(s)	927
BseAI	TCCGGA	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	110, 367
BseDI	CCNNGG	3 cut(s)	108, 227, 270
BseGI	GGATG	3 cut(s)	196, 722, 1084
BseJI	GATNNNNATC	1 cut(s)	927
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	2 cut(s)	65, 362
BseSI	GKGCMC	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	254, 870, 1053
BsgI	GTGCAG	2 cut(s)	408, 715
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	186, 232
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	10, 229, 270
BsmAI	GTCTC	3 cut(s)	296, 312, 836
BsmBI	CGTCTC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	186, 232
Bso31I	GGTCTC	1 cut(s)	836
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	9
BspANI	GGCC	2 cut(s)	186, 232
BspCNI	CTCAG	1 cut(s)	214
BspEI	TCCGGA	1 cut(s)	9
BspLI	GGNNCC	4 cut(s)	8, 24, 186, 835
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	8 cut(s)	14, 59, 146, 337, 694, 828, 841, 1026
BspQI	GCTCTTC	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	676
BssECI	CCNNGG	3 cut(s)	108, 227, 270
BssSI	CACGAG	1 cut(s)	871
Bst2BI	CACGAG	1 cut(s)	871
Bst2UI	CCWGG	2 cut(s)	110, 367
Bst4CI	ACNGT	4 cut(s)	397, 631, 968, 1064
Bst6I	CTCTTC	9 cut(s)	43, 278, 318, 481, 650, 706, 891, 966, 995
BstC8I	GCNNGC	3 cut(s)	247, 761, 1046
BstDEI	CTNAG	2 cut(s)	201, 785
BstF5I	GGATG	3 cut(s)	196, 722, 1084
BstMAI	GTCTC	3 cut(s)	296, 312, 836
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 798
BstNI	CCWGG	2 cut(s)	110, 367
BstPAI	GACNNNNGTC	1 cut(s)	740
BstSCI	CCNGG	4 cut(s)	108, 227, 269, 365
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	254, 870, 1053
BstX2I	RGATCY	3 cut(s)	6, 64, 833
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	3 cut(s)	6, 64, 833
BstZI	CGGCCG	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	186, 232
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	3 cut(s)	196, 722, 1084
BtsI	GCAGTG	2 cut(s)	88, 1080
BtsIMutI	CAGTG	3 cut(s)	88, 1069, 1080
Cac8I	GCNNGC	3 cut(s)	247, 761, 1046
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	184, 185, 550
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	642, 748
CspCI	CAANNNNNGTGG	2 cut(s)	1056, 1091
CviAII	CATG	3 cut(s)	179, 935, 1036
CviQI	GTAC	2 cut(s)	642, 748
DdeI	CTNAG	2 cut(s)	201, 785
EaeI	YGGCCR	1 cut(s)	230
EagI	CGGCCG	1 cut(s)	230
Eam1104I	CTCTTC	9 cut(s)	43, 278, 318, 481, 650, 706, 891, 966, 995
EarI	CTCTTC	9 cut(s)	43, 278, 318, 481, 650, 706, 891, 966, 995
EclXI	CGGCCG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	550
Eco52I	CGGCCG	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	299, 396
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	108, 365
EcoT38I	GRGCYC	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	3 cut(s)	182, 938, 1039
FaiI	YATR	5 cut(s)	180, 627, 914, 936, 1037
FalI	AAGNNNNNCTT	4 cut(s)	768, 800, 799, 831
FatI	CATG	3 cut(s)	178, 934, 1035
FbaI	TGATCA	2 cut(s)	175, 211
Fnu4HI	GCNGC	3 cut(s)	243, 884, 1042
FokI	GGATG	3 cut(s)	183, 729, 1091
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	243, 884, 1042
FspBI	CTAG	1 cut(s)	920
GluI	GCNGC	3 cut(s)	243, 884, 1042
HaeIII	GGCC	2 cut(s)	186, 232
HapII	CCGG	3 cut(s)	10, 229, 270
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	182, 938, 1039
HincII	GTYRAC	3 cut(s)	569, 706, 731
HindII	GTYRAC	3 cut(s)	569, 706, 731
HinfI	GANTC	2 cut(s)	416, 646
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	3 cut(s)	10, 229, 270
HphI	GGTGA	3 cut(s)	93, 950, 980
Hpy166II	GTNNAC	4 cut(s)	569, 706, 731, 905
Hpy188I	TCNGA	4 cut(s)	211, 301, 415, 806
Hpy188III	TCNNGA	3 cut(s)	10, 333, 478
Hpy8I	GTNNAC	4 cut(s)	569, 706, 731, 905
Hpy99I	CGWCG	4 cut(s)	254, 257, 511, 954
HpyAV	CCTTC	5 cut(s)	346, 364, 420, 514, 774
HpyCH4III	ACNGT	4 cut(s)	397, 631, 968, 1064
HpyCH4IV	ACGT	2 cut(s)	139, 952
HpyCH4V	TGCA	6 cut(s)	115, 389, 674, 696, 1067, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 798
HpyF3I	CTNAG	2 cut(s)	201, 785
HpySE526I	ACGT	2 cut(s)	139, 952
Hsp92II	CATG	3 cut(s)	182, 938, 1039
Kpn2I	TCCGGA	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	175, 211
KspAI	GTTAAC	1 cut(s)	706
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	5 cut(s)	239, 274, 492, 789, 880
Lsp1109I	GCAGC	3 cut(s)	254, 870, 1053
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	2 cut(s)	139, 952
MaeIII	GTNAC	1 cut(s)	991
MflI	RGATCY	3 cut(s)	6, 64, 833
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	4 cut(s)	289, 530, 603, 857
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	811
MroI	TCCGGA	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	2 cut(s)	533, 705
MslI	CAYNNNNRTG	1 cut(s)	936
MspI	CCGG	3 cut(s)	10, 229, 270
MspR9I	CCNGG	4 cut(s)	110, 229, 271, 367
MvaI	CCWGG	2 cut(s)	110, 367
MwoI	GCNNNNNNNGC	2 cut(s)	255, 798
NciI	CCSGG	2 cut(s)	229, 271
NlaIII	CATG	3 cut(s)	182, 938, 1039
NlaIV	GGNNCC	4 cut(s)	8, 24, 186, 835
PciSI	GCTCTTC	1 cut(s)	891
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	847
PkrI	GCNGC	3 cut(s)	244, 885, 1043
PleI	GAGTC	1 cut(s)	654
PpsI	GAGTC	1 cut(s)	654
PshAI	GACNNNNGTC	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	108, 365
PspGI	CCWGG	2 cut(s)	108, 365
PspN4I	GGNNCC	4 cut(s)	8, 24, 186, 835
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	184, 185, 550
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	3 cut(s)	6, 64, 833
PsyI	GACNNNGTC	1 cut(s)	847
RsaI	GTAC	2 cut(s)	643, 749
RsaNI	GTAC	2 cut(s)	642, 748
RseI	CAYNNNNRTG	1 cut(s)	936
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	2 cut(s)	533, 705
SatI	GCNGC	3 cut(s)	243, 884, 1042
Sau96I	GGNCC	3 cut(s)	184, 185, 550
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	4 cut(s)	110, 229, 271, 367
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	1071
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	936
Sse9I	AATT	4 cut(s)	289, 530, 603, 857
SspMI	CTAG	1 cut(s)	920
StyD4I	CCNGG	4 cut(s)	108, 227, 269, 365
TaaI	ACNGT	4 cut(s)	397, 631, 968, 1064
TaiI	ACGT	2 cut(s)	142, 955
TaqI	TCGA	4 cut(s)	433, 621, 689, 700
TasI	AATT	4 cut(s)	289, 530, 603, 857
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	533, 705
Tru9I	TTAA	2 cut(s)	533, 705
TscAI	CASTG	3 cut(s)	95, 1069, 1080
TseI	GCWGC	3 cut(s)	242, 883, 1041
TspDTI	ATGAA	2 cut(s)	975, 1022
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	3 cut(s)	95, 1069, 1080
Tth111I	GACNNNGTC	1 cut(s)	847
VpaK11BI	GGWCC	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	1 cut(s)	920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.