Rroxscaffold_6G00402300

WRC

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011978
Physical Location & Seq
Reverse (-)
24709811 .. 24711981
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402300.1

Sequence Viewer

Length: 1092 bp
ATGAGGATCCGGAAAAGACAGGTCCCGTTGCCCCTCTCTTCTCTCTCGCCCGTGCCTCTACCAGATCCGCACCTCCTCAGCCTCAACCACTGCTCATCATCACCTCCCCTGGTGCAACAACAACAACAACGTATCCACCACGATCCAAAACCCTCCCAACGACTTGATCATGTGGGTCCTCTCCCTCATCCTCAGCCGTCTGATCATCCCAATCGCACCCGGCCGATTGGAACAGCGAGCAACGACGGCTGTGATTTTTCCGGGGAGCTGAAGAAGAGAAATTACTGCTCGGAGACATTGAAAGGGGAAGACGAAGATGGATCAAGAGATCAGGCAGAGGAGAAGGGTAATGATACCAGGAAGGGAAGCACATTGGGTGCAGAAACTGTATCTGGGTTTCCTTCAGAATCATCAAGTTCTTCTCATCGAGTTCTTGGGAGATGGTTTGAGGGAGAGAAAGCGTTCCCATTCAAGAAGCGAAGAGGGAGCTTCGGGGAGGCGACGAGAATGGAGAAGGAGAAGAAATTAACGCAGACCAAGATGGACAAGAAATGTGATGGTCAACAGTGTGATGATAAGAAGCAAGAAGATAGAGTAATTACGAAAGAAAGCCTCGACCATACTGTTGGTAGTGGTACGAGTCCAAAGAAGAGAGCAAGAGGCAATGCAATAATGGAGGGATCGAGGTGCAGTCGAGTTAACGGAAGAGGATGGAGGTGTTGTCAACAGACACTTGTCGGGTACTCTCTTTGCGAGCATCACTTGGGCAAAGGAAGGCTTAGGAGCTTGAACAGCGTCCGAAGTCGCTCTTTTGCGAGTTCTGTTGGATCCATAGAGATCAAGTCCAAGCAATTATCAAAACCCTCGTGTTTGGAGCTGCCAAAGGAAGAGGAGCATAAACCTGATATGCTACTAGATGTCAATCATCATGGTGAATCTCAACGACACAAAAATGAATACGGTGAAGAGAAAAAGCCGTTGGTGGTTACGAAGAAGAGAATGAAACTCGGTATTGTAAAGGCGCGATCCATGAGCAGCTTGCTTGGGCAAACGAACAGTGCAACTGCAGTGGATGATGAGAATAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRC

Protein Analysis

363

Amino Acids

40.53

Weight (kDa)

9.46

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 226 - 266 2.7e-15 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42040
fragaria_vesca FvH4_6g22070
malus_domestica MD12G1056100.v1.1 MD14G1055800.v1.1
prunus_persica Prupe.7G079000_v2.0.a1 Prupe.7G079000_v2.0.a1
pyrus_communis pycom12g04900 pycom14g04590
rosa_chinensis RchiOBHm_Chr3g0479411
rosa_laevigata RLG00000023578
rosa_multiflora Rmu_sc0000107.1_g000002
rosa_roxburghii Rroxscaffold_6G00402300
rosa_rugosa Rorug03G0175000
rosa_samantha Rh3AG226200 Rh3BG258900 Rh3BG259000 Rh3CG255100 Rh3DG250600
rosa_wichuraiana Rw3G020190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1024
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 1 cut(s) 68
AclWI GGATC 8 cut(s) 14, 59, 137, 328, 688, 822, 835, 1020
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 2 cut(s) 290, 387
AfaI GTAC 2 cut(s) 637, 743
AgsI TTSAA 3 cut(s) 301, 472, 790
AjnI CCWGG 2 cut(s) 108, 356
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AluBI AGCT 5 cut(s) 268, 489, 786, 877, 1038
AluI AGCT 5 cut(s) 268, 489, 786, 877, 1038
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 8 cut(s) 14, 59, 137, 328, 688, 822, 835, 1020
AlwNI CAGNNNCTG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 877, 1035
Asp700I GAANNNNTTC 1 cut(s) 461
AspLEI GCGC 1 cut(s) 1024
AspS9I GGNCC 2 cut(s) 22, 176
AsuC2I CCSGG 2 cut(s) 220, 262
AsuHPI GGTGA 3 cut(s) 93, 944, 974
AvaII GGWCC 2 cut(s) 22, 176
BamHI GGATCC 2 cut(s) 6, 827
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
BauI CACGAG 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 315
BbvCI CCTCAGC 2 cut(s) 77, 192
BbvI GCAGC 2 cut(s) 864, 1047
BccI CCATC 5 cut(s) 311, 435, 535, 551, 705
BceAI ACGGC 3 cut(s) 181, 262, 961
BciT130I CCWGG 2 cut(s) 110, 358
BciVI GTATCC 1 cut(s) 143
BclI TGATCA 2 cut(s) 166, 202
BcnI CCSGG 2 cut(s) 220, 262
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 914
BfmI CTRYAG 1 cut(s) 1065
BfuI GTATCC 1 cut(s) 143
BisI GCNGC 2 cut(s) 878, 1036
BlsI GCNGC 2 cut(s) 879, 1037
Bme1390I CCNGG 4 cut(s) 110, 220, 262, 358
Bme18I GGWCC 2 cut(s) 22, 176
BmgT120I GGNCC 2 cut(s) 22, 176
BmiI GGNNCC 4 cut(s) 8, 24, 177, 829
BmrFI CCNGG 4 cut(s) 110, 220, 262, 358
BmsI GCATC 1 cut(s) 766
BoxI GACNNNNGTC 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 315
Bpu10I CCTNAGC 3 cut(s) 77, 192, 779
BpuMI CCSGG 2 cut(s) 220, 262
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 2 cut(s) 108, 261
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bse3DI GCAATG 1 cut(s) 670
Bse8I GATNNNNATC 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 9
BseBI CCWGG 2 cut(s) 110, 358
BseDI CCNNGG 2 cut(s) 108, 261
BseGI GGATG 4 cut(s) 187, 205, 716, 1078
BseJI GATNNNNATC 1 cut(s) 921
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 2 cut(s) 91, 206
BseRI GAGGAG 3 cut(s) 65, 353, 905
BseX3I CGGCCG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 864, 1047
BsgI GTGCAG 2 cut(s) 399, 709
Bsh1236I CGCG 1 cut(s) 1024
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 10, 220, 261
BslFI GGGAC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 9
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 90, 205
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 1 cut(s) 1024
BspLI GGNNCC 4 cut(s) 8, 24, 177, 829
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 8 cut(s) 14, 59, 137, 328, 688, 822, 835, 1020
BsrDI GCAATG 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 108, 261
BssSI CACGAG 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 865
Bst2UI CCWGG 2 cut(s) 110, 358
Bst4CI ACNGT 5 cut(s) 388, 567, 625, 962, 1058
Bst6I CTCTTC 8 cut(s) 43, 269, 475, 644, 700, 882, 960, 989
BstC8I GCNNGC 3 cut(s) 238, 755, 1040
BstDEI CTNAG 3 cut(s) 77, 192, 779
BstF5I GGATG 4 cut(s) 187, 205, 716, 1078
BstFNI CGCG 1 cut(s) 1024
BstHHI GCGC 1 cut(s) 1024
BstMAI GTCTC 1 cut(s) 287
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 246, 792
BstNI CCWGG 2 cut(s) 110, 358
BstPAI GACNNNNGTC 1 cut(s) 734
BstSCI CCNGG 4 cut(s) 108, 218, 260, 356
BstSFI CTRYAG 1 cut(s) 1065
BstUI CGCG 1 cut(s) 1024
BstV1I GCAGC 2 cut(s) 864, 1047
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 3 cut(s) 6, 64, 827
BstXI CCANNNNNNTGG 1 cut(s) 626
BstYI RGATCY 3 cut(s) 6, 64, 827
BstZI CGGCCG 1 cut(s) 221
BsuI GTATCC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 4 cut(s) 187, 205, 716, 1078
BtsI GCAGTG 2 cut(s) 88, 1074
BtsIMutI CAGTG 4 cut(s) 88, 572, 1063, 1074
Cac8I GCNNGC 3 cut(s) 238, 755, 1040
CaiI CAGNNNCTG 1 cut(s) 386
CfoI GCGC 1 cut(s) 1024
Cfr13I GGNCC 2 cut(s) 22, 176
CseI GACGC 1 cut(s) 784
Csp6I GTAC 2 cut(s) 636, 742
CspCI CAANNNNNGTGG 2 cut(s) 1050, 1085
CviAII CATG 3 cut(s) 170, 929, 1030
CviQI GTAC 2 cut(s) 636, 742
DdeI CTNAG 3 cut(s) 77, 192, 779
EaeI YGGCCR 1 cut(s) 221
EagI CGGCCG 1 cut(s) 221
Eam1104I CTCTTC 8 cut(s) 43, 269, 475, 644, 700, 882, 960, 989
EarI CTCTTC 8 cut(s) 43, 269, 475, 644, 700, 882, 960, 989
EclXI CGGCCG 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 22, 176
Eco52I CGGCCG 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 290, 387
EcoO109I RGGNCCY 2 cut(s) 22, 176
EcoRII CCWGG 2 cut(s) 108, 356
FaeI CATG 3 cut(s) 173, 932, 1033
FaiI YATR 7 cut(s) 171, 621, 833, 897, 908, 930, 1031
FalI AAGNNNNNCTT 4 cut(s) 762, 794, 793, 825
FaqI GGGAC 1 cut(s) 8
FatI CATG 3 cut(s) 169, 928, 1029
FbaI TGATCA 2 cut(s) 166, 202
Fnu4HI GCNGC 2 cut(s) 878, 1036
FokI GGATG 4 cut(s) 174, 192, 723, 1085
Fsp4HI GCNGC 2 cut(s) 878, 1036
FspBI CTAG 1 cut(s) 914
GlaI GCGC 1 cut(s) 1023
GluI GCNGC 2 cut(s) 878, 1036
HaeIII GGCC 1 cut(s) 223
HapII CCGG 3 cut(s) 10, 220, 261
HgaI GACGC 1 cut(s) 784
HhaI GCGC 1 cut(s) 1024
Hin1II CATG 3 cut(s) 173, 932, 1033
Hin6I GCGC 1 cut(s) 1022
HinP1I GCGC 1 cut(s) 1022
HincII GTYRAC 3 cut(s) 563, 700, 725
HindII GTYRAC 3 cut(s) 563, 700, 725
HinfI GANTC 3 cut(s) 407, 640, 935
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 3 cut(s) 10, 220, 261
HphI GGTGA 3 cut(s) 93, 944, 974
Hpy166II GTNNAC 3 cut(s) 563, 700, 725
Hpy188I TCNGA 4 cut(s) 202, 292, 406, 800
Hpy188III TCNNGA 3 cut(s) 10, 324, 472
Hpy8I GTNNAC 3 cut(s) 563, 700, 725
Hpy99I CGWCG 2 cut(s) 248, 505
HpyAV CCTTC 5 cut(s) 337, 355, 411, 508, 768
HpyCH4III ACNGT 5 cut(s) 388, 567, 625, 962, 1058
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 6 cut(s) 115, 380, 668, 690, 1061, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 792
HpyF3I CTNAG 3 cut(s) 77, 192, 779
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 3 cut(s) 173, 932, 1033
HspAI GCGC 1 cut(s) 1022
Kpn2I TCCGGA 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 166, 202
KspAI GTTAAC 1 cut(s) 700
LmnI GCTCC 5 cut(s) 265, 486, 783, 874, 892
Lsp1109I GCAGC 2 cut(s) 864, 1047
LweI GCATC 1 cut(s) 766
MaeI CTAG 1 cut(s) 914
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 985
MflI RGATCY 3 cut(s) 6, 64, 827
MluCI AATT 4 cut(s) 280, 524, 597, 851
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 805
MroI TCCGGA 1 cut(s) 9
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 2 cut(s) 527, 699
MslI CAYNNNNRTG 2 cut(s) 930, 951
MspI CCGG 3 cut(s) 10, 220, 261
MspR9I CCNGG 4 cut(s) 110, 220, 262, 358
MvaI CCWGG 2 cut(s) 110, 358
MvnI CGCG 1 cut(s) 1024
MwoI GCNNNNNNNGC 2 cut(s) 246, 792
NciI CCSGG 2 cut(s) 220, 262
NlaIII CATG 3 cut(s) 173, 932, 1033
NlaIV GGNNCC 4 cut(s) 8, 24, 177, 829
PdmI GAANNNNTTC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 407, 935
PkrI GCNGC 2 cut(s) 879, 1037
PleI GAGTC 1 cut(s) 648
PpsI GAGTC 1 cut(s) 648
PpuMI RGGWCCY 2 cut(s) 22, 176
PshAI GACNNNNGTC 1 cut(s) 734
Psp5II RGGWCCY 2 cut(s) 22, 176
Psp6I CCWGG 2 cut(s) 108, 356
PspGI CCWGG 2 cut(s) 108, 356
PspN4I GGNNCC 4 cut(s) 8, 24, 177, 829
PspPI GGNCC 2 cut(s) 22, 176
PspPPI RGGWCCY 2 cut(s) 22, 176
PstI CTGCAG 1 cut(s) 1069
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 3 cut(s) 6, 64, 827
RsaI GTAC 2 cut(s) 637, 743
RsaNI GTAC 2 cut(s) 636, 742
RseI CAYNNNNRTG 2 cut(s) 930, 951
SaqAI TTAA 2 cut(s) 527, 699
SatI GCNGC 2 cut(s) 878, 1036
Sau96I GGNCC 2 cut(s) 22, 176
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 4 cut(s) 110, 220, 262, 358
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 2 cut(s) 22, 176
SmiMI CAYNNNNRTG 2 cut(s) 930, 951
Sse9I AATT 4 cut(s) 280, 524, 597, 851
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 4 cut(s) 108, 218, 260, 356
TaaI ACNGT 5 cut(s) 388, 567, 625, 962, 1058
TaiI ACGT 1 cut(s) 133
TaqI TCGA 4 cut(s) 427, 615, 683, 694
TasI AATT 4 cut(s) 280, 524, 597, 851
TfiI GAWTC 2 cut(s) 407, 935
Tru1I TTAA 2 cut(s) 527, 699
Tru9I TTAA 2 cut(s) 527, 699
TscAI CASTG 4 cut(s) 95, 572, 1063, 1074
TseI GCWGC 2 cut(s) 877, 1035
TspDTI ATGAA 2 cut(s) 969, 1016
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 4 cut(s) 95, 572, 1063, 1074
VpaK11BI GGWCC 2 cut(s) 22, 176
XmnI GAANNNNTTC 1 cut(s) 461
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.