Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011978

Physical Location & Seq

Genomic Coordinates Forward (+)

14821916 .. 14823370

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0175000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCTTCTCAAAACCCCCAGCTTCACTTTGTCTTGTTTCCATTTATGGCTCAAGGTCACATGATCCCAATGATAGATATTGCCAGAATTCTGGCACAGCGAGGCGTGATGATCACCATAGTCACCACACCACATAATGGTGCTCGTTTTCAAACAGTTCTTGCTCGTGCCATAGAATCTGGGCTCCAAATCCGATTAGTCCAACTGAAATTTCCATGTGAAGAAGCAGGACTACCTGATGGGTGTGAAAACCTTGACATGCTACCTTCACAAGACTTGACCTTGAATTTCTTTACAGGAACTGCGGTGCTACAACTGCCAGTAGAAAAGTTATTCGAAGAGCTGCACCCCAAGCCAAGTTGCATAGTCTCTGACATTTGTTTGCCATGGACCATCAACATTGCTCGCAAGTTCCACATTCCAAGGGTATCTTTCTCTGGAACGAGTTGCTTTTGTTTACTTTGTATGTTCATTTTGCACATGTCTAAGGTTCATGAGAATATAACCTCCGAATCGGAGTACTTTGTTGTGCCTGACTTGCCCGAACGAATTGAGATAACCAAGGCTCAGCTTCCAGGGCCTCTGACTCCGAATATGAAAGATTTTCATGAAGTAATGGTTGCAGCTGAGCTGGAGTCATATGGGATAATTATGAATACTTATGAAGAATTGGAACCGGCATATGTTAAAGATTATAAGAAGGCAAGAAATGACAAAGTCTGGTGTATTGGCCCGGTGTCACTATGCAACAAAGATGACTTGGATAAGGTACAAAGAGGTAACAAGGCCGCAGTTGACGAAGACCACTGCTTGAAGTGGCTTGATTCCTGGGGATCAAGTTCTGTACTTTATGCTTGCCTTGGAAGTTTATGTAATCTCACATCTGAGCAACTGATAGAACTTGGACTGGGATTAGAGGCATCAAAGAAACCATTTATTTGGGTTGTAAGGGGTAGTGGTCAATCAGAGGGTTTGGAACTGTGGATGAAAGAAAATGGTTTTGAGGAAAGGACCAAAGAAAGGAGCCTTTTGATTCGAGGTTGGGCTCCACAAACACTGATATTGTCACACCCTTCAGTTGGAGGGTTCTTAACACATTGCGGCTGGAATTCAACATTAGAAGGCATATGTGCTGGGCTGCCAATGATTACATGGCCGCTGTTTGCAGACCAGTTTCTCAATGAGAAACTAGTGGAACAGATTCTAAAAATTGCAGTGAGGGTTGGGGTAGAATATCCAATGAAGTGGGGAGAGGAAGAGAAGATAGGTGTGTTGGTGAAGAAGAAAAATGTGAAGGAAGCAATAGACAAGTTGATGGATGGAGAGGAAAGTCAAGGGAGAAGAGAAAGAGCGAAAAAGTTTGCAAAGATGGGAAAGAGAGCAGTAGAAGAAGGGGGGTCTTCTGATCTCAACACTGCACTTCTAATCCAAGATATCATGCAAAAAGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRC

Protein Analysis

484

Amino Acids

54.32

Weight (kDa)

5.69

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 246	2.6e-08	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	272 - 401	5.4e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42040
fragaria_vesca	FvH4_6g22070
malus_domestica	MD12G1056100.v1.1 MD14G1055800.v1.1
prunus_persica	Prupe.7G079000_v2.0.a1 Prupe.7G079000_v2.0.a1
pyrus_communis	pycom12g04900 pycom14g04590
rosa_chinensis	RchiOBHm_Chr3g0479411
rosa_laevigata	RLG00000023578
rosa_multiflora	Rmu_sc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_6G00402300
rosa_rugosa	Rorug03G0175000
rosa_samantha	Rh3AG226200 Rh3BG258900 Rh3BG259000 Rh3CG255100 Rh3DG250600
rosa_wichuraiana	Rw3G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	4 cut(s)	305, 789, 1101, 1157
AclWI	GGATC	2 cut(s)	58, 841
AcoI	YGGCCR	1 cut(s)	1154
AcsI	RAATTY	4 cut(s)	87, 209, 286, 1108
AcuI	CTGAAG	1 cut(s)	1059
AfaI	GTAC	3 cut(s)	521, 771, 846
AfiI	CCNNNNNNNGG	3 cut(s)	137, 1020, 1079
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	4 cut(s)	152, 286, 814, 1113
AhlI	ACTAGT	1 cut(s)	1189
AjnI	CCWGG	2 cut(s)	574, 827
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	5 cut(s)	22, 343, 571, 626, 631
AluI	AGCT	5 cut(s)	22, 343, 571, 626, 631
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	58, 841
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	578, 730, 786, 1154
ApeKI	GCWGC	3 cut(s)	343, 623, 1138
ApoI	RAATTY	4 cut(s)	87, 209, 286, 1108
Asp700I	GAANNNNTTC	1 cut(s)	1200
AspS9I	GGNCC	4 cut(s)	390, 578, 731, 1011
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	3 cut(s)	106, 115, 1288
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	390, 1011
BanII	GRGCYC	2 cut(s)	186, 1048
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	2 cut(s)	807, 1392
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	330, 635, 1125
BccI	CCATC	5 cut(s)	233, 401, 1309, 1313, 1363
BciT130I	CCWGG	2 cut(s)	576, 829
BclI	TGATCA	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	1 cut(s)	373
BcuI	ACTAGT	1 cut(s)	1189
BfaI	CTAG	1 cut(s)	1190
BisI	GCNGC	6 cut(s)	344, 624, 789, 1102, 1139, 1157
BlpI	GCTNAGC	2 cut(s)	567, 627
BlsI	GCNGC	6 cut(s)	345, 625, 790, 1103, 1140, 1158
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	3 cut(s)	576, 734, 829
Bme18I	GGWCC	2 cut(s)	390, 1011
BmgT120I	GGNCC	4 cut(s)	390, 578, 731, 1011
BmiI	GGNNCC	4 cut(s)	185, 675, 1025, 1047
BmrFI	CCNGG	3 cut(s)	576, 734, 829
BmrI	ACTGGG	1 cut(s)	917
BmsI	GCATC	1 cut(s)	929
BmuI	ACTGGG	1 cut(s)	917
BpiI	GAAGAC	2 cut(s)	807, 1392
BpmI	CTGGAG	1 cut(s)	653
Bpu1102I	GCTNAGC	2 cut(s)	567, 627
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	734
BsaJI	CCNNGG	6 cut(s)	386, 422, 561, 575, 828, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 1020, 1079
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	3 cut(s)	320, 912, 1171
Bse3DI	GCAATG	2 cut(s)	399, 1096
BseBI	CCWGG	2 cut(s)	576, 829
BseDI	CCNNGG	6 cut(s)	386, 422, 561, 575, 828, 859
BseGI	GGATG	2 cut(s)	990, 1324
BseLI	CCNNNNNNNGG	3 cut(s)	137, 1020, 1079
BseMI	GCAATG	2 cut(s)	399, 1096
BseMII	CTCAG	3 cut(s)	581, 618, 876
BseNI	ACTGG	3 cut(s)	320, 912, 1171
BseXI	GCAGC	3 cut(s)	330, 635, 1125
BseYI	CCCAGC	2 cut(s)	18, 1133
BsgI	GTGCAG	2 cut(s)	329, 1401
BshFI	GGCC	4 cut(s)	580, 732, 788, 1156
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	677, 734
BslI	CCNNNNNNNGG	3 cut(s)	137, 1020, 1079
BsmAI	GTCTC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	580, 732, 788, 1156
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	145, 186, 1048
Bsp143I	GATC	4 cut(s)	63, 111, 833, 1405
Bsp1720I	GCTNAGC	2 cut(s)	567, 627
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	4 cut(s)	305, 789, 1101, 1157
BspANI	GGCC	4 cut(s)	580, 732, 788, 1156
BspCNI	CTCAG	3 cut(s)	580, 619, 877
BspHI	TCATGA	2 cut(s)	493, 607
BspLI	GGNNCC	4 cut(s)	185, 675, 1025, 1047
BspPI	GGATC	2 cut(s)	58, 841
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	336
BsrDI	GCAATG	2 cut(s)	399, 1096
BsrFI	RCCGGY	1 cut(s)	676
BsrI	ACTGG	3 cut(s)	320, 912, 1171
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	6 cut(s)	386, 422, 561, 575, 828, 859
BssMI	GATC	4 cut(s)	63, 111, 833, 1405
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	4 cut(s)	386, 422, 561, 859
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	576, 829
Bst4CI	ACNGT	2 cut(s)	157, 981
Bst6I	CTCTTC	3 cut(s)	333, 1251, 1336
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	406, 856
BstDEI	CTNAG	4 cut(s)	486, 567, 627, 885
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	990, 1324
BstKTI	GATC	4 cut(s)	66, 114, 836, 1408
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	63, 111, 833, 1405
BstMWI	GCNNNNNNNGC	4 cut(s)	316, 352, 538, 577
BstNI	CCWGG	2 cut(s)	576, 829
BstNSI	RCATGY	2 cut(s)	262, 484
BstSCI	CCNGG	3 cut(s)	574, 732, 827
BstV1I	GCAGC	3 cut(s)	330, 635, 1125
BstV2I	GAAGAC	2 cut(s)	807, 1392
BstXI	CCANNNNNNTGG	3 cut(s)	91, 939, 1245
BsuRI	GGCC	4 cut(s)	580, 732, 788, 1156
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	990, 1324
BtsI	GCAGTG	3 cut(s)	805, 1221, 1413
BtsIMutI	CAGTG	4 cut(s)	805, 1055, 1221, 1413
Cac8I	GCNNGC	2 cut(s)	406, 856
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	2 cut(s)	493, 607
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	4 cut(s)	390, 578, 731, 1011
Csp6I	GTAC	3 cut(s)	520, 770, 845
CviAII	CATG	9 cut(s)	61, 216, 259, 387, 481, 494, 608, 1152, 1438
CviQI	GTAC	3 cut(s)	520, 770, 845
DdeI	CTNAG	4 cut(s)	486, 567, 627, 885
DpnI	GATC	4 cut(s)	65, 113, 835, 1407
DpnII	GATC	4 cut(s)	63, 111, 833, 1405
EaeI	YGGCCR	1 cut(s)	1154
Eam1104I	CTCTTC	3 cut(s)	333, 1251, 1336
EarI	CTCTTC	3 cut(s)	333, 1251, 1336
Eco130I	CCWWGG	4 cut(s)	386, 422, 561, 859
Eco24I	GRGCYC	2 cut(s)	186, 1048
Eco32I	GATATC	1 cut(s)	1435
Eco47I	GGWCC	2 cut(s)	390, 1011
Eco57I	CTGAAG	1 cut(s)	1059
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRI	GAATTC	2 cut(s)	87, 1108
EcoRII	CCWGG	2 cut(s)	574, 827
EcoRV	GATATC	1 cut(s)	1435
EcoT14I	CCWWGG	4 cut(s)	386, 422, 561, 859
EcoT38I	GRGCYC	2 cut(s)	186, 1048
ErhI	CCWWGG	4 cut(s)	386, 422, 561, 859
FaeI	CATG	9 cut(s)	64, 219, 262, 390, 484, 497, 611, 1155, 1441
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FatI	CATG	9 cut(s)	60, 215, 258, 386, 480, 493, 607, 1151, 1437
FauNDI	CATATG	3 cut(s)	640, 682, 1127
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	6 cut(s)	344, 624, 789, 1102, 1139, 1157
FokI	GGATG	2 cut(s)	997, 1331
FriOI	GRGCYC	2 cut(s)	186, 1048
Fsp4HI	GCNGC	6 cut(s)	344, 624, 789, 1102, 1139, 1157
FspBI	CTAG	1 cut(s)	1190
GluI	GCNGC	6 cut(s)	344, 624, 789, 1102, 1139, 1157
GsaI	CCCAGC	2 cut(s)	22, 1137
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	580, 732, 788, 1156
HapII	CCGG	2 cut(s)	677, 734
Hin1II	CATG	9 cut(s)	64, 219, 262, 390, 484, 497, 611, 1155, 1441
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	7 cut(s)	176, 512, 586, 635, 824, 1033, 1201
HpaII	CCGG	2 cut(s)	677, 734
HphI	GGTGA	3 cut(s)	106, 115, 1288
Hpy166II	GTNNAC	2 cut(s)	458, 796
Hpy188I	TCNGA	9 cut(s)	194, 373, 511, 517, 585, 591, 886, 967, 1405
Hpy188III	TCNNGA	3 cut(s)	438, 494, 608
Hpy8I	GTNNAC	2 cut(s)	458, 796
HpyAV	CCTTC	6 cut(s)	276, 694, 1083, 1115, 1288, 1385
HpyCH4III	ACNGT	2 cut(s)	157, 981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	316, 352, 538, 577
HpyF3I	CTNAG	4 cut(s)	486, 567, 627, 885
Hsp92II	CATG	9 cut(s)	64, 219, 262, 390, 484, 497, 611, 1155, 1441
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	63, 111, 833, 1405
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	189, 1023, 1051
Lsp1109I	GCAGC	3 cut(s)	330, 635, 1125
LweI	GCATC	1 cut(s)	929
MaeI	CTAG	1 cut(s)	1190
MaeIII	GTNAC	5 cut(s)	56, 121, 738, 779, 1065
MalI	GATC	4 cut(s)	65, 113, 835, 1407
MboI	GATC	4 cut(s)	63, 111, 833, 1405
MhlI	GDGCHC	3 cut(s)	145, 186, 1048
MluCI	AATT	8 cut(s)	87, 209, 286, 549, 648, 668, 1108, 1209
MlyI	GAGTC	2 cut(s)	580, 644
MmeI	TCCRAC	2 cut(s)	226, 1060
MroXI	GAANNNNTTC	1 cut(s)	1200
MseI	TTAA	2 cut(s)	687, 1091
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	626, 1159
MspI	CCGG	2 cut(s)	677, 734
MspR9I	CCNGG	3 cut(s)	576, 734, 829
MvaI	CCWGG	2 cut(s)	576, 829
MwoI	GCNNNNNNNGC	4 cut(s)	316, 352, 538, 577
NciI	CCSGG	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	386
NdeI	CATATG	3 cut(s)	640, 682, 1127
NdeII	GATC	4 cut(s)	63, 111, 833, 1405
NlaIII	CATG	9 cut(s)	64, 219, 262, 390, 484, 497, 611, 1155, 1441
NlaIV	GGNNCC	4 cut(s)	185, 675, 1025, 1047
NmuCI	GTSAC	4 cut(s)	56, 121, 738, 1065
NspI	RCATGY	2 cut(s)	262, 484
NspV	TTCGAA	1 cut(s)	336
PagI	TCATGA	2 cut(s)	493, 607
PciI	ACATGT	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	1200
PfeI	GAWTC	5 cut(s)	176, 512, 824, 1033, 1201
PflFI	GACNNNGTC	1 cut(s)	716
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	6 cut(s)	345, 625, 790, 1103, 1140, 1158
PleI	GAGTC	2 cut(s)	580, 643
PpsI	GAGTC	2 cut(s)	580, 643
PscI	ACATGT	1 cut(s)	480
PsiI	TTATAA	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	574, 827
PspFI	CCCAGC	2 cut(s)	18, 1133
PspGI	CCWGG	2 cut(s)	574, 827
PspN4I	GGNNCC	4 cut(s)	185, 675, 1025, 1047
PspPI	GGNCC	4 cut(s)	390, 578, 731, 1011
PstNI	CAGNNNCTG	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	521, 771, 846
RsaNI	GTAC	3 cut(s)	520, 770, 845
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	687, 1091
SatI	GCNGC	6 cut(s)	344, 624, 789, 1102, 1139, 1157
Sau3AI	GATC	4 cut(s)	63, 111, 833, 1405
Sau96I	GGNCC	4 cut(s)	390, 578, 731, 1011
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	2 cut(s)	580, 644
ScrFI	CCNGG	3 cut(s)	576, 734, 829
SduI	GDGCHC	3 cut(s)	145, 186, 1048
SfaNI	GCATC	1 cut(s)	929
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	390, 1011
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	1189
Sse9I	AATT	8 cut(s)	87, 209, 286, 549, 648, 668, 1108, 1209
SsiI	CCGC	4 cut(s)	305, 789, 1101, 1157
SspMI	CTAG	1 cut(s)	1190
StyD4I	CCNGG	3 cut(s)	574, 732, 827
StyI	CCWWGG	4 cut(s)	386, 422, 561, 859
TaaI	ACNGT	2 cut(s)	157, 981
TaqI	TCGA	2 cut(s)	336, 1036
TasI	AATT	8 cut(s)	87, 209, 286, 549, 648, 668, 1108, 1209
TatI	WGTACW	2 cut(s)	519, 844
TauI	GCSGC	3 cut(s)	791, 1104, 1159
TfiI	GAWTC	5 cut(s)	176, 512, 824, 1033, 1201
Tru1I	TTAA	2 cut(s)	687, 1091
Tru9I	TTAA	2 cut(s)	687, 1091
TscAI	CASTG	4 cut(s)	812, 1062, 1221, 1420
TseFI	GTSAC	4 cut(s)	56, 121, 738, 1065
TseI	GCWGC	3 cut(s)	343, 623, 1138
Tsp45I	GTSAC	4 cut(s)	56, 121, 738, 1065
TspDTI	ATGAA	9 cut(s)	460, 482, 596, 611, 624, 668, 678, 1001, 1256
TspRI	CASTG	4 cut(s)	812, 1062, 1221, 1420
Tth111I	GACNNNGTC	1 cut(s)	716
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	390, 1011
XapI	RAATTY	4 cut(s)	87, 209, 286, 1108
XceI	RCATGY	2 cut(s)	262, 484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1149
XmnI	GAANNNNTTC	1 cut(s)	1200
XspI	CTAG	1 cut(s)	1190
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.