Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Reverse (-)

17717332 .. 17720366

Gene Structure 3035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTTTCACTTCCCGAGGAAACCCTTCTTTTCTCTTCTTCTTCTTCTTCTTCCTCTGTCTCTCCACAGTCTCTGCTTACATCAACAGCACAAGCAGCAATAATGATGAAGTAAGAAGAGAGCTAGCTTCTGGGAGATGTAATTGGTTTAGAGGGAATTGGGTTTATGATGTAAAGTACCCACTTTATGATCCTTATAAATGTCCATTCATAGATCCACAGTTTAACTGTAAGAAGTATGGTCGTCCTGACAATGCTTACCTTAAGTATCGATGGCAACCATCTTCTTGCTCTCTCCCCAGATTCAATGGGTTGTATTTCTTGAGGAGGATGAGAGGGAAGAAGATAATGTTCGTTGGAGATTCACTAAGCACAAACATGTGGCAATCTCTTGCTTGTCTAATTCACTCTTGGGTTCCTAACACTCGTTACACTCTTATTCGCCAAAAGGGTCTTGCTTCACTTACCTTTGAGGAATACGGAGTGACGTTGTTGCTATACAGAACACAGTTCTTGGTAGATTTGAATGTGGAGAAAGTTGGGAGAGTGCTTAAGCTTGATTCCATTAAGCAAGGGAATATGTGGAGAGGCATGGACGTTTTGATTTTCAACTCGTGGCATTGGTGGACACACACCGAACACATTCAGCCGTGGGATTACATGGAAGATGGGAATAGGTTGTACAAAGACATGAACCGGCTCGTTGCTTTCTACAAAGGAATGACCACTTGGGCTCGATGGGTTAATGCTTACGTCGATCCTTCTAAGACTAAAGTCTTCTTCAACGGCGTGTCTCCTACTCATTACGAGGGAAAGGATTGGGGAGAGCCAATGAACTCATGTAGGAGTCAAACGCAGCCATTTTACGGAAGGAAGTATCCAGGAGGGACACCAATGGCTTGGGTGATTCTAAACAAAGTGATGAGGAGATTGAAGAAACCGGTCCATTGGCTCGATATAACCGGTCTGTCTCAGCTTCGTAAAGATGCTCATCCTTCTGCTTTCAGTGGGAACCATCCTGGTAATGACTGTAGCCATTGGTGTCTCCCTGGTTTGCCTGATACTTGGAACTTGCTCTTTTACTCTACTCTTTTCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

367

Amino Acids

43.17

Weight (kDa)

9.51

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	46 - 98	1.4e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	99 - 362	2.4e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AclWI	GGATC	3 cut(s)	185, 209, 752
AfaI	GTAC	2 cut(s)	179, 683
AfiI	CCNNNNNNNGG	1 cut(s)	866
AflII	CTTAAG	2 cut(s)	263, 551
AflIII	ACRYGT	1 cut(s)	378
AgeI	ACCGGT	2 cut(s)	940, 962
AgsI	TTSAA	5 cut(s)	307, 526, 610, 784, 934
AjnI	CCWGG	3 cut(s)	880, 1018, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	712, 744
AluBI	AGCT	4 cut(s)	124, 128, 556, 976
AluI	AGCT	4 cut(s)	124, 128, 556, 976
Alw26I	GTCTC	5 cut(s)	65, 76, 798, 975, 1049
AlwI	GGATC	3 cut(s)	185, 209, 752
AlwNI	CAGNNNCTG	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	96, 856
AsiGI	ACCGGT	2 cut(s)	940, 962
Asp700I	GAANNNNTTC	2 cut(s)	25, 642
AspS9I	GGNCC	1 cut(s)	943
AsuHPI	GGTGA	1 cut(s)	916
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	943
BanII	GRGCYC	1 cut(s)	736
BauI	CACGAG	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	769
BbvI	GCAGC	2 cut(s)	108, 868
BccI	CCATC	5 cut(s)	267, 289, 662, 732, 1023
BceAI	ACGGC	2 cut(s)	634, 802
BciT130I	CCWGG	3 cut(s)	882, 1020, 1050
BciVI	GTATCC	1 cut(s)	888
BcoDI	GTCTC	5 cut(s)	65, 76, 798, 975, 1049
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	1030
BfrI	CTTAAG	2 cut(s)	263, 551
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	2 cut(s)	97, 857
BlsI	GCNGC	2 cut(s)	98, 858
Bme1390I	CCNGG	3 cut(s)	882, 1020, 1050
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	2 cut(s)	417, 1013
BmrFI	CCNGG	3 cut(s)	882, 1020, 1050
BmsI	GCATC	1 cut(s)	976
BmtI	GCTAGC	1 cut(s)	128
BoxI	GACNNNNGTC	1 cut(s)	773
BpiI	GAAGAC	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	990
BsaJI	CCNNGG	3 cut(s)	16, 650, 1048
BsaWI	WCCGGW	2 cut(s)	940, 962
Bsc4I	CCNNNNNNNGG	1 cut(s)	866
Bse118I	RCCGGY	3 cut(s)	696, 940, 962
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	3 cut(s)	882, 1020, 1050
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	16, 650, 1048
BseGI	GGATG	3 cut(s)	336, 991, 1015
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	986
BseRI	GAGGAG	2 cut(s)	340, 940
BseXI	GCAGC	2 cut(s)	108, 868
BshTI	ACCGGT	2 cut(s)	940, 962
BshVI	ATCGAT	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	697, 941, 963
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	1 cut(s)	866
BsmAI	GTCTC	5 cut(s)	65, 76, 798, 975, 1049
BsmFI	GGGAC	1 cut(s)	901
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	190, 214, 757
BspCNI	CTCAG	1 cut(s)	985
BspDI	ATCGAT	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	417, 1013
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	3 cut(s)	185, 209, 752
BspTI	CTTAAG	2 cut(s)	263, 551
BsrFI	RCCGGY	3 cut(s)	696, 940, 962
BsrGI	TGTACA	1 cut(s)	681
BssAI	RCCGGY	3 cut(s)	696, 940, 962
BssECI	CCNNGG	3 cut(s)	16, 650, 1048
BssMI	GATC	3 cut(s)	190, 214, 757
BssSI	CACGAG	1 cut(s)	613
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	3 cut(s)	882, 1020, 1050
Bst4CI	ACNGT	5 cut(s)	70, 222, 230, 510, 1031
Bst6I	CTCTTC	2 cut(s)	41, 112
BstAFI	CTTAAG	2 cut(s)	263, 551
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	368, 765, 972
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	336, 991, 1015
BstKTI	GATC	3 cut(s)	193, 217, 760
BstMAI	GTCTC	5 cut(s)	65, 76, 798, 975, 1049
BstMBI	GATC	3 cut(s)	190, 214, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	3 cut(s)	882, 1020, 1050
BstNSI	RCATGY	1 cut(s)	382
BstPAI	GACNNNNGTC	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	880, 1018, 1048
BstSFI	CTRYAG	1 cut(s)	1030
BstV1I	GCAGC	2 cut(s)	108, 868
BstV2I	GAAGAC	1 cut(s)	769
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	900
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	888
BsuTUI	ATCGAT	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	3 cut(s)	336, 991, 1015
BtsIMutI	CAGTG	1 cut(s)	1012
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr10I	RCCGGY	3 cut(s)	696, 940, 962
Cfr13I	GGNCC	1 cut(s)	943
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	178, 682
CspAI	ACCGGT	2 cut(s)	940, 962
CviAII	CATG	5 cut(s)	379, 592, 661, 691, 840
CviQI	GTAC	2 cut(s)	178, 682
DdeI	CTNAG	3 cut(s)	368, 765, 972
DpnI	GATC	3 cut(s)	192, 216, 759
DpnII	GATC	3 cut(s)	190, 214, 757
Eam1104I	CTCTTC	2 cut(s)	41, 112
EarI	CTCTTC	2 cut(s)	41, 112
Eco24I	GRGCYC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	943
Eco88I	CYCGRG	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	880, 1018, 1048
EcoT38I	GRGCYC	1 cut(s)	736
FaeI	CATG	5 cut(s)	382, 595, 664, 694, 843
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	5 cut(s)	378, 591, 660, 690, 839
Fnu4HI	GCNGC	2 cut(s)	97, 857
FokI	GGATG	3 cut(s)	343, 978, 1002
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	2 cut(s)	97, 857
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	97, 857
HapII	CCGG	3 cut(s)	697, 941, 963
Hin1II	CATG	5 cut(s)	382, 595, 664, 694, 843
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	5 cut(s)	303, 362, 560, 847, 907
HpaII	CCGG	3 cut(s)	697, 941, 963
HphI	GGTGA	1 cut(s)	916
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188III	TCNNGA	3 cut(s)	15, 248, 322
Hpy8I	GTNNAC	1 cut(s)	627
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	4 cut(s)	36, 771, 864, 1005
HpyCH4III	ACNGT	5 cut(s)	70, 222, 230, 510, 1031
HpyCH4IV	ACGT	3 cut(s)	488, 597, 753
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	368, 765, 972
HpySE526I	ACGT	3 cut(s)	488, 597, 753
Hsp92II	CATG	5 cut(s)	382, 595, 664, 694, 843
Kzo9I	GATC	3 cut(s)	190, 214, 757
Lsp1109I	GCAGC	2 cut(s)	108, 868
LweI	GCATC	1 cut(s)	976
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	3 cut(s)	488, 597, 753
MaeIII	GTNAC	2 cut(s)	428, 484
MalI	GATC	3 cut(s)	192, 216, 759
MboI	GATC	3 cut(s)	190, 214, 757
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	3 cut(s)	142, 157, 402
MlyI	GAGTC	1 cut(s)	856
MmeI	TCCRAC	1 cut(s)	337
MroXI	GAANNNNTTC	2 cut(s)	25, 642
MseI	TTAA	6 cut(s)	225, 264, 552, 567, 744, 1102
MslI	CAYNNNNRTG	1 cut(s)	377
MspCI	CTTAAG	2 cut(s)	263, 551
MspI	CCGG	3 cut(s)	697, 941, 963
MspR9I	CCNGG	3 cut(s)	882, 1020, 1050
MvaI	CCWGG	3 cut(s)	882, 1020, 1050
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeII	GATC	3 cut(s)	190, 214, 757
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	5 cut(s)	382, 595, 664, 694, 843
NlaIV	GGNNCC	2 cut(s)	417, 1013
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	25, 642
PfeI	GAWTC	4 cut(s)	303, 362, 560, 907
PfoI	TCCNGGA	1 cut(s)	880
PinAI	ACCGGT	2 cut(s)	940, 962
PkrI	GCNGC	2 cut(s)	98, 858
PleI	GAGTC	1 cut(s)	855
PpsI	GAGTC	1 cut(s)	855
PscI	ACATGT	1 cut(s)	378
PshAI	GACNNNNGTC	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	880, 1018, 1048
PspGI	CCWGG	3 cut(s)	880, 1018, 1048
PspN4I	GGNNCC	2 cut(s)	417, 1013
PspPI	GGNCC	1 cut(s)	943
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	179, 683
RsaNI	GTAC	2 cut(s)	178, 682
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	6 cut(s)	225, 264, 552, 567, 744, 1102
SatI	GCNGC	2 cut(s)	97, 857
Sau3AI	GATC	3 cut(s)	190, 214, 757
Sau96I	GGNCC	1 cut(s)	943
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	3 cut(s)	882, 1020, 1050
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	1 cut(s)	976
SfcI	CTRYAG	1 cut(s)	1030
SinI	GGWCC	1 cut(s)	943
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	263, 322, 551
SmoI	CTYRAG	3 cut(s)	263, 322, 551
Sse9I	AATT	3 cut(s)	142, 157, 402
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	3 cut(s)	880, 1018, 1048
TaaI	ACNGT	5 cut(s)	70, 222, 230, 510, 1031
TaiI	ACGT	3 cut(s)	491, 600, 756
TaqI	TCGA	4 cut(s)	271, 736, 756, 954
TasI	AATT	3 cut(s)	142, 157, 402
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	4 cut(s)	303, 362, 560, 907
Tru1I	TTAA	6 cut(s)	225, 264, 552, 567, 744, 1102
Tru9I	TTAA	6 cut(s)	225, 264, 552, 567, 744, 1102
TscAI	CASTG	1 cut(s)	1012
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	96, 856
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	123, 199, 707, 848
TspGWI	ACGGA	2 cut(s)	495, 882
TspRI	CASTG	1 cut(s)	1012
Vha464I	CTTAAG	2 cut(s)	263, 551
VpaK11BI	GGWCC	1 cut(s)	943
XceI	RCATGY	1 cut(s)	382
XmnI	GAANNNNTTC	2 cut(s)	25, 642
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.