Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Reverse (-)

20810721 .. 20815002

Gene Structure 4282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGTTACCTATCCAAAGCTGCAGCAGCTGCAACTGCTTCTCTGTTTTTAACTCTGTTTCTGGTTTCCCACCAAACAAAAGCACAAGATTTCAATTCCTTGTTGCACAATAACAATGCTACAAACGCAGACGAAGTAGTAGTAGCTAGAAAACTTGCAGGAGGTAAGTGCAACTGGTTCAGAGGCTCATGGGTTTACGACGCTTCGTATAATCCTCACTACGATTCCAACTGCCCCTTCATAGATCCAGAATTCAACTGCCAGAAGTATGGCCGCCCTGATAAATCTTATCTCAAATATCGATGGCAGCCTTCTTCTTGTTCACTCCCCAGGTTTAATGGGTTGAATCTGTTGCAGCAATGGAGAGGGAAGAAGATTATGTTTGTTGGTGATTCACTGAGTTTGAACCAGTGGCAATCCCTATCATGTATGATTCATTCTTGGGTACCAAACTCCAAGTACATTTTCAGCCCTTTCAGAAATGGCATAGCTTCAGTCACATTCCAGGACTATGGTGTTCAGATGCTACTATACCACACAACCTACTTGGTCGATCTTGATAGCGAGAAGGTTGGAAGAGTGTTGAAGCTCGGCTCCATCAGGGGCGGTAACGCCTGGAGAGGCATGGACGTCCTGATCTTTGACACATGGCATTGGTGGACTCACACCGGAAGAACTCAACCATTTGACTATATACAAGATGGGGGTAAATTGTACAAAGATATGAATCGTCTGGTGGCATTTTACAAAGGACTGACCACTTGGGCAAGATGGGTCGACCGGAATGTTGATCCTTCCAAGACCAAGGTCTTCTTCCAAGGCATCTCTCCCATTCATTACGAGGGCAAGGACTGGAATCAACCATCAAGGTCATGCAAAGGTGAAACAACACCATACTCAGGGACAAGCTACCCAGCAGGGATACCCCAGTCTTGGGTAGTTGTTAACAAAGTTTTAAGTAGGATTAAGAAACCAGTTTATCTTCTTGACATTACATACCTCTCACAACTGCGTAAAGAAGCGCACCCTTCTGTTTATAGCGGCCAGCATTCCGGCACAGACTGCAGCCATTGGTGTCTTCCGGGACTTCCAGATACTTGGAATGACTTGTTTTATGGGGCTCTGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

378

Amino Acids

43.11

Weight (kDa)

9.2

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	56 - 108	3.1e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	109 - 169	1.4e-18	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	3 cut(s)	274, 606, 1041
AclWI	GGATC	2 cut(s)	239, 785
AcoI	YGGCCR	2 cut(s)	271, 1042
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	3 cut(s)	447, 461, 716
AfiI	CCNNNNNNNGG	3 cut(s)	899, 933, 934
AgsI	TTSAA	5 cut(s)	94, 256, 346, 406, 586
AjnI	CCWGG	3 cut(s)	329, 504, 614
AjuI	GAANNNNNNNTTGG	6 cut(s)	221, 253, 449, 481, 797, 829
AluBI	AGCT	6 cut(s)	20, 29, 146, 491, 589, 909
AluI	AGCT	6 cut(s)	20, 29, 146, 491, 589, 909
AlwI	GGATC	2 cut(s)	239, 785
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	271, 1042
ApeKI	GCWGC	7 cut(s)	20, 23, 26, 29, 307, 355, 1065
ApoI	RAATTY	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	1024
AsuC2I	CCSGG	1 cut(s)	1083
AsuHPI	GGTGA	2 cut(s)	401, 893
BaeI	ACNNNNGTAYC	2 cut(s)	914, 947
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	1123
BbsI	GAAGAC	2 cut(s)	802, 1070
BbvI	GCAGC	7 cut(s)	7, 16, 35, 38, 319, 367, 1077
BccI	CCATC	5 cut(s)	297, 605, 695, 765, 871
BciT130I	CCWGG	3 cut(s)	331, 506, 616
BciVI	GTATCC	1 cut(s)	915
BcnI	CCSGG	1 cut(s)	1083
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	2 cut(s)	21, 1063
BfuI	GTATCC	1 cut(s)	915
BisI	GCNGC	9 cut(s)	21, 24, 27, 30, 274, 308, 356, 1042, 1066
BlsI	GCNGC	9 cut(s)	22, 25, 28, 31, 275, 309, 357, 1043, 1067
Bme1390I	CCNGG	4 cut(s)	331, 506, 616, 1083
BmiI	GGNNCC	2 cut(s)	447, 595
BmrFI	CCNGG	4 cut(s)	331, 506, 616, 1083
BmrI	ACTGGG	1 cut(s)	922
BmsI	GCATC	2 cut(s)	513, 831
BmuI	ACTGGG	1 cut(s)	922
BoxI	GACNNNNGTC	1 cut(s)	806
BpiI	GAAGAC	2 cut(s)	802, 1070
BpmI	CTGGAG	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	1083
Bsa29I	ATCGAT	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	329, 804, 817
BsaWI	WCCGGW	2 cut(s)	668, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	899, 933, 934
Bse1I	ACTGG	5 cut(s)	179, 409, 857, 928, 974
Bse3DI	GCAATG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	331, 506, 616
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	3 cut(s)	329, 804, 817
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	899, 933, 934
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	389, 912
BseNI	ACTGG	5 cut(s)	179, 409, 857, 928, 974
BseXI	GCAGC	7 cut(s)	7, 16, 35, 38, 319, 367, 1077
BseYI	CCCAGC	1 cut(s)	913
Bsh1285I	CGRYCG	1 cut(s)	781
BshFI	GGCC	2 cut(s)	273, 1044
BshNI	GGYRCC	1 cut(s)	445
BshVI	ATCGAT	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	781
BsiSI	CCGG	4 cut(s)	669, 781, 1053, 1082
BslFI	GGGAC	2 cut(s)	916, 1098
BslI	CCNNNNNNNGG	3 cut(s)	899, 933, 934
BsmFI	GGGAC	2 cut(s)	916, 1098
BsmI	GAATGC	1 cut(s)	1048
BsnI	GGCC	2 cut(s)	273, 1044
Bsp1286I	GDGCHC	1 cut(s)	1123
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	244, 553, 636, 790
BspACI	CCGC	3 cut(s)	274, 606, 1041
BspANI	GGCC	2 cut(s)	273, 1044
BspCNI	CTCAG	2 cut(s)	390, 911
BspDI	ATCGAT	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	447, 595
BspMAI	CTGCAG	2 cut(s)	25, 1067
BspPI	GGATC	2 cut(s)	239, 785
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	5 cut(s)	179, 409, 857, 928, 974
BssECI	CCNNGG	3 cut(s)	329, 804, 817
BssMI	GATC	4 cut(s)	244, 553, 636, 790
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	804, 817
Bst2UI	CCWGG	3 cut(s)	331, 506, 616
Bst6I	CTCTTC	1 cut(s)	571
BstACI	GRCGYC	1 cut(s)	630
BstAPI	GCANNNNNTGC	2 cut(s)	29, 1062
BstAUI	TGTACA	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	1046
BstDEI	CTNAG	2 cut(s)	398, 898
BstEII	GGTNACC	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	1024
BstKTI	GATC	4 cut(s)	247, 556, 639, 793
BstMBI	GATC	4 cut(s)	244, 553, 636, 790
BstMCI	CGRYCG	1 cut(s)	781
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 29, 35, 125, 1062
BstNI	CCWGG	3 cut(s)	331, 506, 616
BstPAI	GACNNNNGTC	1 cut(s)	806
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	4 cut(s)	329, 504, 614, 1081
BstSFI	CTRYAG	2 cut(s)	21, 1063
BstV1I	GCAGC	7 cut(s)	7, 16, 35, 38, 319, 367, 1077
BstV2I	GAAGAC	2 cut(s)	802, 1070
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	3 cut(s)	269, 512, 1098
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	273, 1044
BsuTUI	ATCGAT	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	395, 416
Cac8I	GCNNGC	1 cut(s)	1046
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	1024
ClaI	ATCGAT	1 cut(s)	301
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	446, 460, 715
CviAII	CATG	5 cut(s)	189, 426, 625, 648, 873
CviQI	GTAC	3 cut(s)	446, 460, 715
DdeI	CTNAG	2 cut(s)	398, 898
DpnI	GATC	4 cut(s)	246, 555, 638, 792
DpnII	GATC	4 cut(s)	244, 553, 636, 790
EaeI	YGGCCR	2 cut(s)	271, 1042
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	804, 817
Eco24I	GRGCYC	1 cut(s)	1123
Eco57I	CTGAAG	1 cut(s)	477
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	329, 504, 614
EcoT14I	CCWWGG	2 cut(s)	804, 817
EcoT38I	GRGCYC	1 cut(s)	1123
ErhI	CCWWGG	2 cut(s)	804, 817
FaeI	CATG	5 cut(s)	192, 429, 628, 651, 876
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	916, 1098
FatI	CATG	5 cut(s)	188, 425, 624, 647, 872
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 274, 308, 356, 1042, 1066
FriOI	GRGCYC	1 cut(s)	1123
Fsp4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 274, 308, 356, 1042, 1066
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	1023
GluI	GCNGC	9 cut(s)	21, 24, 27, 30, 274, 308, 356, 1042, 1066
GsaI	CCCAGC	1 cut(s)	917
GsuI	CTGGAG	1 cut(s)	637
HaeIII	GGCC	2 cut(s)	273, 1044
HapII	CCGG	4 cut(s)	669, 781, 1053, 1082
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	1024
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	5 cut(s)	192, 429, 628, 651, 876
Hin6I	GCGC	1 cut(s)	1022
HinP1I	GCGC	1 cut(s)	1022
HincII	GTYRAC	2 cut(s)	778, 946
HindII	GTYRAC	2 cut(s)	778, 946
HinfI	GANTC	7 cut(s)	224, 346, 392, 433, 661, 727, 856
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	4 cut(s)	669, 781, 1053, 1082
HphI	GGTGA	2 cut(s)	401, 893
Hpy166II	GTNNAC	5 cut(s)	196, 323, 660, 778, 946
Hpy188I	TCNGA	3 cut(s)	182, 479, 522
Hpy188III	TCNNGA	5 cut(s)	248, 557, 634, 986, 1091
Hpy8I	GTNNAC	5 cut(s)	196, 323, 660, 778, 946
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	5 cut(s)	247, 321, 562, 804, 1038
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	8 cut(s)	23, 32, 106, 158, 171, 355, 876, 1065
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 29, 35, 125, 1062
HpyF3I	CTNAG	2 cut(s)	398, 898
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	5 cut(s)	192, 429, 628, 651, 876
HspAI	GCGC	1 cut(s)	1022
KpnI	GGTACC	1 cut(s)	449
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	4 cut(s)	244, 553, 636, 790
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	7 cut(s)	7, 16, 35, 38, 319, 367, 1077
LweI	GCATC	2 cut(s)	513, 831
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	3 cut(s)	5, 496, 608
MalI	GATC	4 cut(s)	246, 555, 638, 792
MboI	GATC	4 cut(s)	244, 553, 636, 790
MboII	GAAGA	9 cut(s)	306, 382, 385, 588, 684, 802, 805, 974, 1070
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	1123
MluCI	AATT	3 cut(s)	94, 251, 710
MlyI	GAGTC	1 cut(s)	655
MmeI	TCCRAC	2 cut(s)	252, 553
MnlI	CCTC	7 cut(s)	155, 176, 225, 359, 614, 835, 1010
MseI	TTAA	6 cut(s)	50, 336, 945, 956, 966, 1132
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	4 cut(s)	669, 781, 1053, 1082
MspR9I	CCNGG	4 cut(s)	331, 506, 616, 1083
Mva1269I	GAATGC	1 cut(s)	1048
MvaI	CCWGG	3 cut(s)	331, 506, 616
MwoI	GCNNNNNNNGC	5 cut(s)	26, 29, 35, 125, 1062
NciI	CCSGG	1 cut(s)	1083
NdeII	GATC	4 cut(s)	244, 553, 636, 790
NlaIII	CATG	5 cut(s)	192, 429, 628, 651, 876
NlaIV	GGNNCC	2 cut(s)	447, 595
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	1048
PfeI	GAWTC	6 cut(s)	224, 346, 392, 433, 727, 856
PfoI	TCCNGGA	2 cut(s)	504, 1081
PkrI	GCNGC	9 cut(s)	22, 25, 28, 31, 275, 309, 357, 1043, 1067
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	806
Psp6I	CCWGG	3 cut(s)	329, 504, 614
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	913
PspGI	CCWGG	3 cut(s)	329, 504, 614
PspN4I	GGNNCC	2 cut(s)	447, 595
PstI	CTGCAG	2 cut(s)	25, 1067
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	3 cut(s)	447, 461, 716
RsaNI	GTAC	3 cut(s)	446, 460, 715
SalI	GTCGAC	1 cut(s)	776
SaqAI	TTAA	6 cut(s)	50, 336, 945, 956, 966, 1132
SatI	GCNGC	9 cut(s)	21, 24, 27, 30, 274, 308, 356, 1042, 1066
Sau3AI	GATC	4 cut(s)	244, 553, 636, 790
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	4 cut(s)	331, 506, 616, 1083
SduI	GDGCHC	1 cut(s)	1123
SfaNI	GCATC	2 cut(s)	513, 831
SfcI	CTRYAG	2 cut(s)	21, 1063
Sse9I	AATT	3 cut(s)	94, 251, 710
SsiI	CCGC	3 cut(s)	274, 606, 1041
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	329, 504, 614, 1081
StyI	CCWWGG	2 cut(s)	804, 817
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	3 cut(s)	301, 552, 777
TasI	AATT	3 cut(s)	94, 251, 710
TatI	WGTACW	2 cut(s)	459, 714
TauI	GCSGC	2 cut(s)	276, 1044
TfiI	GAWTC	6 cut(s)	224, 346, 392, 433, 727, 856
Tru1I	TTAA	6 cut(s)	50, 336, 945, 956, 966, 1132
Tru9I	TTAA	6 cut(s)	50, 336, 945, 956, 966, 1132
TscAI	CASTG	2 cut(s)	402, 416
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	7 cut(s)	20, 23, 26, 29, 307, 355, 1065
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	229, 425, 740, 824
TspRI	CASTG	2 cut(s)	402, 416
XapI	RAATTY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.