Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Reverse (-)

44725321 .. 44729038

Gene Structure 3718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGTTACCTATCCAAAGCTGCAGCTGCTGCTCTGTTTCTAACTCTGCTTCTGGTTTCCCACCAAACAAAAGCAGAGGATTTCAATTCCTTGTTCATCAATAACAATGCTACAAACTCAGACCAAGTAGTAGCTAGAAACCTTGCAGGAGGTAAATGCAACTGGTTCAGAGGTTCATGGGTTTACGACGCTTCCCATTATTCTCCCTACGATTCCAACTGTCCCTTCATAGATCCAGAGTTCAACTGTCAAAAGTATGGCCGCCCCGATAAATCTTACCTCAAATATCGATGGCAGCCCTTCTCTTGTTCACTGCCCAGGTTTAATGGGTTGAATATGTTACAGCAATGGAGGGGGAAGAAGATTATGTTTGTTGGTGATTCACTGAGTTTGAACCAGTGGCAATCCCTAACATGTATGCTTCATTCTTGGGTTCCAAATTCCAAGTACATTTTCACCCCATTAAGAAATGGCATAGCGTCGGTCACATTCCAGGACTATGGTGTTCAGATACTATTATACCACACAACGTACCTTGTGGATCTTGACAGCGAGCAGGTTGGAAGAGTCTTGAAGCTCGACTCCATCAGGGGCGGTAACGCCTGGAAAGGCATGGACGTCCTGATCTTCGACACGTGGCATTGGTGGACTCATACCGGAAGAACCCAACCATGGGACTATATACAAGATGGGGGTAAATTGTACAAGGATATGAACCGTCTGGTGGCTTTTTACAGAGGACTAACCACTTGGGGTAGATGGGTTGATCGGAATGTTAATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATCTCTCCCATTCATTACGAGGGCAAGGATTGGAGTCAACCATCAAGGTCATGCAAAGGTGAAACACAACCATACTTAGGCAGAAGCTACCCAGCAGGGATACCCCAAGCATGGGTAGTTGTTAACAAAGTGTTGAGTAGGATTAAGAAACCAGTTTATCTTCTTGACATTACATCCCTGTCACAACTGCGTAAAGAAGCACACCCTTCTGTTTATAGCGGCGAGCATTCTGGCACAGACTGCAGCCATTGGTGTCTTCCGGGGCTACCGGATACTTGGAATGACTTGCTATATGGGGCTCTATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

373

Amino Acids

42.79

Weight (kDa)

9.1

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	52 - 104	4.9e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	105 - 368	6.6e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	547
AciI	CCGC	3 cut(s)	262, 594, 1029
AclWI	GGATC	2 cut(s)	227, 549
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	439
AcvI	CACGTG	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	3 cut(s)	449, 533, 704
AfiI	CCNNNNNNNGG	6 cut(s)	672, 673, 724, 887, 921, 922
AflIII	ACRYGT	2 cut(s)	413, 633
AgsI	TTSAA	5 cut(s)	85, 244, 334, 394, 574
AjnI	CCWGG	3 cut(s)	317, 492, 602
AjuI	GAANNNNNNNTTGG	6 cut(s)	209, 241, 437, 469, 785, 817
AluBI	AGCT	5 cut(s)	20, 26, 134, 577, 897
AluI	AGCT	5 cut(s)	20, 26, 134, 577, 897
AlwI	GGATC	2 cut(s)	227, 549
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	6 cut(s)	20, 23, 26, 29, 295, 1053
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	780, 812
AsuC2I	CCSGG	1 cut(s)	1071
AsuHPI	GGTGA	3 cut(s)	389, 448, 881
BanII	GRGCYC	1 cut(s)	1111
BbrPI	CACGTG	1 cut(s)	636
BbsI	GAAGAC	2 cut(s)	790, 1058
BbvI	GCAGC	6 cut(s)	7, 13, 16, 35, 307, 1065
BccI	CCATC	5 cut(s)	285, 593, 683, 753, 859
BciT130I	CCWGG	3 cut(s)	319, 494, 604
BciVI	GTATCC	2 cut(s)	903, 1075
BcnI	CCSGG	1 cut(s)	1071
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	21, 1051
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	2 cut(s)	903, 1075
BisI	GCNGC	8 cut(s)	21, 24, 27, 30, 262, 296, 1030, 1054
BlsI	GCNGC	8 cut(s)	22, 25, 28, 31, 263, 297, 1031, 1055
Bme1390I	CCNGG	4 cut(s)	319, 494, 604, 1071
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	4 cut(s)	319, 494, 604, 1071
BmsI	GCATC	1 cut(s)	819
BpiI	GAAGAC	2 cut(s)	790, 1058
BpuMI	CCSGG	1 cut(s)	1071
Bsa29I	ATCGAT	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	5 cut(s)	317, 671, 792, 805, 1070
BsaWI	WCCGGW	2 cut(s)	656, 1078
Bsc4I	CCNNNNNNNGG	6 cut(s)	672, 673, 724, 887, 921, 922
Bse1I	ACTGG	3 cut(s)	167, 397, 962
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	319, 494, 604
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	5 cut(s)	317, 671, 792, 805, 1070
BseGI	GGATG	1 cut(s)	983
BseLI	CCNNNNNNNGG	6 cut(s)	672, 673, 724, 887, 921, 922
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	132, 377
BseNI	ACTGG	3 cut(s)	167, 397, 962
BseXI	GCAGC	6 cut(s)	7, 13, 16, 35, 307, 1065
BseYI	CCCAGC	1 cut(s)	901
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	657, 1070, 1079
BslFI	GGGAC	2 cut(s)	207, 689
BslI	CCNNNNNNNGG	6 cut(s)	672, 673, 724, 887, 921, 922
BsmFI	GGGAC	2 cut(s)	207, 689
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	1111
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	232, 541, 624, 766
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	3 cut(s)	262, 594, 1029
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	131, 378
BspDI	ATCGAT	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	2 cut(s)	25, 1055
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	227, 549
BsrDI	GCAATG	1 cut(s)	353
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	3 cut(s)	167, 397, 962
BssECI	CCNNGG	5 cut(s)	317, 671, 792, 805, 1070
BssMI	GATC	4 cut(s)	232, 541, 624, 766
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	3 cut(s)	671, 792, 805
Bst2UI	CCWGG	3 cut(s)	319, 494, 604
Bst4CI	ACNGT	3 cut(s)	221, 248, 719
Bst6I	CTCTTC	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	618
BstAPI	GCANNNNNTGC	2 cut(s)	29, 1050
BstAUI	TGTACA	1 cut(s)	702
BstBAI	YACGTR	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	554, 1034
BstDEI	CTNAG	3 cut(s)	118, 386, 886
BstDSI	CCRYGG	1 cut(s)	671
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	983
BstKTI	GATC	4 cut(s)	235, 544, 627, 769
BstMBI	GATC	4 cut(s)	232, 541, 624, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 29, 1050
BstNI	CCWGG	3 cut(s)	319, 494, 604
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	4 cut(s)	317, 492, 602, 1069
BstSFI	CTRYAG	2 cut(s)	21, 1051
BstV1I	GCAGC	6 cut(s)	7, 13, 16, 35, 307, 1065
BstV2I	GAAGAC	2 cut(s)	790, 1058
BstX2I	RGATCY	2 cut(s)	232, 541
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	2 cut(s)	232, 541
Bsu15I	ATCGAT	1 cut(s)	289
BsuI	GTATCC	2 cut(s)	903, 1075
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	983
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	3 cut(s)	311, 383, 404
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	554, 1034
CaiI	CAGNNNCTG	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	289
CseI	GACGC	2 cut(s)	197, 468
Csp6I	GTAC	3 cut(s)	448, 532, 703
CviAII	CATG	6 cut(s)	177, 414, 613, 672, 861, 921
CviQI	GTAC	3 cut(s)	448, 532, 703
DdeI	CTNAG	3 cut(s)	118, 386, 886
DpnI	GATC	4 cut(s)	234, 543, 626, 768
DpnII	GATC	4 cut(s)	232, 541, 624, 766
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
Eco130I	CCWWGG	3 cut(s)	671, 792, 805
Eco24I	GRGCYC	1 cut(s)	1111
Eco72I	CACGTG	1 cut(s)	636
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	3 cut(s)	317, 492, 602
EcoT14I	CCWWGG	3 cut(s)	671, 792, 805
EcoT38I	GRGCYC	1 cut(s)	1111
ErhI	CCWWGG	3 cut(s)	671, 792, 805
FaeI	CATG	6 cut(s)	180, 417, 616, 675, 864, 924
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	2 cut(s)	207, 689
FatI	CATG	6 cut(s)	176, 413, 612, 671, 860, 920
Fnu4HI	GCNGC	8 cut(s)	21, 24, 27, 30, 262, 296, 1030, 1054
FokI	GGATG	1 cut(s)	970
FriOI	GRGCYC	1 cut(s)	1111
Fsp4HI	GCNGC	8 cut(s)	21, 24, 27, 30, 262, 296, 1030, 1054
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	8 cut(s)	21, 24, 27, 30, 262, 296, 1030, 1054
GsaI	CCCAGC	1 cut(s)	905
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	3 cut(s)	657, 1070, 1079
HgaI	GACGC	2 cut(s)	197, 468
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	6 cut(s)	180, 417, 616, 675, 864, 924
HincII	GTYRAC	2 cut(s)	848, 934
HindII	GTYRAC	2 cut(s)	848, 934
HinfI	GANTC	6 cut(s)	212, 380, 567, 581, 649, 844
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	3 cut(s)	657, 1070, 1079
HphI	GGTGA	3 cut(s)	389, 448, 881
Hpy166II	GTNNAC	5 cut(s)	184, 311, 648, 848, 934
Hpy188I	TCNGA	4 cut(s)	121, 170, 510, 771
Hpy188III	TCNNGA	5 cut(s)	236, 545, 571, 622, 974
Hpy8I	GTNNAC	5 cut(s)	184, 311, 648, 848, 934
Hpy99I	CGWCG	2 cut(s)	191, 484
HpyAV	CCTTC	4 cut(s)	235, 310, 792, 1026
HpyCH4III	ACNGT	3 cut(s)	221, 248, 719
HpyCH4IV	ACGT	3 cut(s)	530, 618, 635
HpyCH4V	TGCA	5 cut(s)	23, 146, 159, 864, 1053
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 29, 1050
HpyF3I	CTNAG	3 cut(s)	118, 386, 886
HpySE526I	ACGT	3 cut(s)	530, 618, 635
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	6 cut(s)	180, 417, 616, 675, 864, 924
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	232, 541, 624, 766
Lsp1109I	GCAGC	6 cut(s)	7, 13, 16, 35, 307, 1065
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	3 cut(s)	530, 618, 635
MaeIII	GTNAC	5 cut(s)	5, 339, 484, 596, 990
MalI	GATC	4 cut(s)	234, 543, 626, 768
MboI	GATC	4 cut(s)	232, 541, 624, 766
MboII	GAAGA	9 cut(s)	370, 373, 576, 619, 672, 790, 793, 962, 1058
MflI	RGATCY	2 cut(s)	232, 541
MhlI	GDGCHC	1 cut(s)	1111
MluCI	AATT	3 cut(s)	85, 439, 698
MlyI	GAGTC	4 cut(s)	575, 576, 643, 853
MmeI	TCCRAC	2 cut(s)	240, 541
MnlI	CCTC	7 cut(s)	70, 143, 164, 290, 345, 731, 823
MseI	TTAA	5 cut(s)	324, 464, 777, 933, 954
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	657, 1070, 1079
MspR9I	CCNGG	4 cut(s)	319, 494, 604, 1071
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	3 cut(s)	319, 494, 604
MwoI	GCNNNNNNNGC	3 cut(s)	26, 29, 1050
NciI	CCSGG	1 cut(s)	1071
NcoI	CCATGG	1 cut(s)	671
NdeII	GATC	4 cut(s)	232, 541, 624, 766
NlaIII	CATG	6 cut(s)	180, 417, 616, 675, 864, 924
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	2 cut(s)	484, 990
NspI	RCATGY	1 cut(s)	417
PciI	ACATGT	1 cut(s)	413
PctI	GAATGC	1 cut(s)	1036
PfeI	GAWTC	2 cut(s)	212, 380
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	8 cut(s)	22, 25, 28, 31, 263, 297, 1031, 1055
PleI	GAGTC	4 cut(s)	575, 575, 643, 852
PmaCI	CACGTG	1 cut(s)	636
PmlI	CACGTG	1 cut(s)	636
PpsI	GAGTC	4 cut(s)	575, 575, 643, 852
Ppu21I	YACGTR	1 cut(s)	636
PscI	ACATGT	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	317, 492, 602
PspCI	CACGTG	1 cut(s)	636
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	901
PspGI	CCWGG	3 cut(s)	317, 492, 602
PspN4I	GGNNCC	1 cut(s)	435
PstI	CTGCAG	2 cut(s)	25, 1055
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	232, 541
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	449, 533, 704
RsaNI	GTAC	3 cut(s)	448, 532, 703
SaqAI	TTAA	5 cut(s)	324, 464, 777, 933, 954
SatI	GCNGC	8 cut(s)	21, 24, 27, 30, 262, 296, 1030, 1054
Sau3AI	GATC	4 cut(s)	232, 541, 624, 766
SchI	GAGTC	4 cut(s)	575, 576, 643, 853
ScrFI	CCNGG	4 cut(s)	319, 494, 604, 1071
SduI	GDGCHC	1 cut(s)	1111
SfaNI	GCATC	1 cut(s)	819
SfcI	CTRYAG	2 cut(s)	21, 1051
Sse9I	AATT	3 cut(s)	85, 439, 698
SsiI	CCGC	3 cut(s)	262, 594, 1029
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	317, 492, 602, 1069
StyI	CCWWGG	3 cut(s)	671, 792, 805
TaaI	ACNGT	3 cut(s)	221, 248, 719
TaiI	ACGT	3 cut(s)	533, 621, 638
TaqI	TCGA	3 cut(s)	289, 579, 630
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	3 cut(s)	85, 439, 698
TatI	WGTACW	2 cut(s)	447, 702
TauI	GCSGC	2 cut(s)	264, 1032
TfiI	GAWTC	2 cut(s)	212, 380
Tru1I	TTAA	5 cut(s)	324, 464, 777, 933, 954
Tru9I	TTAA	5 cut(s)	324, 464, 777, 933, 954
TscAI	CASTG	3 cut(s)	318, 390, 404
TseFI	GTSAC	2 cut(s)	484, 990
TseI	GCWGC	6 cut(s)	20, 23, 26, 29, 295, 1053
Tsp45I	GTSAC	2 cut(s)	484, 990
TspDTI	ATGAA	6 cut(s)	85, 165, 217, 413, 728, 812
TspRI	CASTG	3 cut(s)	318, 390, 404
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	417
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.