Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Reverse (-)

30882266 .. 30885556

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGATCAACCGTTTCAAGTCCAAGATGGGTTCTTTGGGTTTTATCCATTTCAGCTCTTGGAGTTCATCTTTCACTCGCAAATCTCCGGTTCCGGTTTCCTTTGCTCAAAACCTCAGAATCCCGGAGAGAGAGTTTGGAAACTCGCCGGCCCATTTCCGTTTCTGCTCTCGTCGTTTTGAATCCGGCAAAGTAGAAACGCTCTCCGACGAGGCTGATGCCAATCAGGTTTTGGATTTGCCAGAAGGGAAGGTCAAGTTTACTCCTGAAATGAGGTTCATATCTGAGACGACTAAGGAGCGGGAGTCCTGTTATCGGGTCCTTGATGACAATGGGAAGCAAATTATGTGCAGCAACTATGCTGAGGTCAGCCCGGAAGTTGCTGTAAAAATGTATACAGACATGGTGATTCTTCAAACTATGGACATCATTTTCTACGAAGCACAGAGGCAAGGAAGAATTTCATTTTATCTGACTACAGTTGGTGAAGAAGCCATCAACATTGCATCTGCTGCAGCACTCACCTTTGATGACATTGTCCTTCCTCAGTACAGGGAGCCAGGAGTTTTAATATGGCGTGGTTTCACTGTACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTACGGGAAAGGCAGGCAGATGCCAATCCATTATGGGTCTAACAAGCACAATTACTTCACTGTAGCATCAACCGTGGCTTCACAACTTCCACATGCTGTTGGTGTTGCTTATTCTCTAAAAATGGACAGAAAAGATGCATGTGTGGTCACATATGTTGGTGATGGTGGCACAAGTGAGGGTGACTTCCATGCTGCTCTAAATTTTGCGGCTGTTACGGAGGCTCCAGTTATATTCATTTGTCGGAACAACGGATGGGCTATCAGTACACCTACTTCAGACCAGTTTCGGAGTGATGGTGTTGTTGTCAAAGGTCGGGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAGTTTACGCTGCACGCAAAATGGCAATCACTGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTTGGGCACCATTCCACATCAGATGATTCGACCAAGTATCGCCCAGTTGATGAGATTGAATTGTGGAAAGTGGAACGAGACCCAGTAACTCGATTTAGAAAATGGATTGAAAGAAATGGTTGGTGGAGTGGTGAGGCAGAGATAGAGGCTAGAAACAGTGCGAGAAAGCAGATATTACATGCAATCCAAGAAGCTGAAAAAGTAGAGAAGCCACCAGTTGCTGACATGTTCACTGATGTATACGACTGTCTTCCTTCCAATCTTGTTGAGCAGGAGAAACGGCTAAGAGAGACAATTAAGAGACACCCCCAGGATTACCCATCTGATGTTCCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

469

Amino Acids

53.14

Weight (kDa)

6.4

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	133 - 429	3.9e-94	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1077
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	2 cut(s)	392, 1311
AciI	CCGC	2 cut(s)	298, 833
AcsI	RAATTY	3 cut(s)	456, 593, 826
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	3 cut(s)	548, 588, 892
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	1296
AgsI	TTSAA	5 cut(s)	16, 179, 413, 1130, 1181
AjnI	CCWGG	2 cut(s)	556, 1380
AluBI	AGCT	3 cut(s)	54, 623, 1265
AluI	AGCT	3 cut(s)	54, 623, 1265
Alw26I	GTCTC	5 cut(s)	278, 1033, 1143, 1355, 1366
AlwNI	CAGNNNCTG	1 cut(s)	1292
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	5 cut(s)	348, 509, 512, 818, 1010
ApoI	RAATTY	3 cut(s)	456, 593, 826
Asp700I	GAANNNNTTC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	148, 316
AsuC2I	CCSGG	2 cut(s)	122, 371
AsuHPI	GGTGA	6 cut(s)	415, 494, 511, 797, 818, 1214
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	1080
BanI	GGYRCC	1 cut(s)	1077
BarI	GAAGNNNNNNTAC	2 cut(s)	883, 915
BbsI	GAAGAC	1 cut(s)	1313
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	5 cut(s)	360, 496, 524, 805, 997
BccI	CCATC	7 cut(s)	19, 500, 782, 873, 914, 965, 1399
BceAI	ACGGC	1 cut(s)	1367
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	558, 1382
BciVI	GTATCC	1 cut(s)	971
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	122, 371
BcoDI	GTCTC	5 cut(s)	278, 1033, 1143, 1355, 1366
BfaI	CTAG	1 cut(s)	1221
BfmI	CTRYAG	3 cut(s)	474, 510, 687
BfuI	GTATCC	1 cut(s)	971
BisI	GCNGC	6 cut(s)	349, 510, 513, 819, 834, 1011
BlsI	GCNGC	6 cut(s)	350, 511, 514, 820, 835, 1012
Bme1390I	CCNGG	4 cut(s)	122, 371, 558, 1382
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	148, 316
BmiI	GGNNCC	5 cut(s)	90, 317, 555, 849, 1079
BmrFI	CCNGG	4 cut(s)	122, 371, 558, 1382
BmrI	ACTGGG	2 cut(s)	1109, 1148
BmsI	GCATC	6 cut(s)	205, 512, 636, 701, 751, 970
BmuI	ACTGGG	2 cut(s)	1109, 1148
BpiI	GAAGAC	1 cut(s)	1313
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	122, 371
BsaBI	GATNNNNATC	2 cut(s)	219, 650
BsaI	GGTCTC	2 cut(s)	1033, 1143
BsaJI	CCNNGG	2 cut(s)	699, 1380
BsaWI	WCCGGW	2 cut(s)	85, 91
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 287, 317, 832, 862, 907, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	6 cut(s)	604, 851, 907, 1115, 1154, 1286
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	2 cut(s)	219, 650
BseBI	CCWGG	2 cut(s)	558, 1382
BseDI	CCNNGG	2 cut(s)	699, 1380
BseGI	GGATG	1 cut(s)	884
BseJI	GATNNNNATC	2 cut(s)	219, 650
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	4 cut(s)	127, 273, 351, 557
BseNI	ACTGG	6 cut(s)	604, 851, 907, 1115, 1154, 1286
BseSI	GKGCMC	1 cut(s)	1080
BseXI	GCAGC	5 cut(s)	360, 496, 524, 805, 997
BsgI	GTGCAG	3 cut(s)	367, 996, 1020
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	1077
BsiSI	CCGG	6 cut(s)	86, 92, 122, 146, 183, 371
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	5 cut(s)	278, 1033, 1143, 1355, 1366
BsmBI	CGTCTC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	2 cut(s)	1033, 1143
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	298, 833
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	4 cut(s)	126, 274, 352, 556
BspLI	GGNNCC	5 cut(s)	90, 317, 555, 849, 1079
BspMAI	CTGCAG	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	1077
BspTNI	GGTCTC	2 cut(s)	1033, 1143
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	6 cut(s)	604, 851, 907, 1115, 1154, 1286
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	699, 1380
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	2 cut(s)	393, 1312
Bst1107I	GTATAC	2 cut(s)	393, 1312
Bst2UI	CCWGG	2 cut(s)	558, 1382
Bst4CI	ACNGT	7 cut(s)	11, 478, 586, 688, 700, 1229, 1319
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	147, 641, 1015
BstDEI	CTNAG	6 cut(s)	113, 282, 291, 360, 543, 1355
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	1 cut(s)	884
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	5 cut(s)	278, 1033, 1143, 1355, 1366
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 1007
BstNI	CCWGG	2 cut(s)	558, 1382
BstNSI	RCATGY	4 cut(s)	722, 768, 1253, 1300
BstSCI	CCNGG	4 cut(s)	120, 369, 556, 1380
BstSFI	CTRYAG	3 cut(s)	474, 510, 687
BstSLI	GKGCMC	1 cut(s)	1080
BstV1I	GCAGC	5 cut(s)	360, 496, 524, 805, 997
BstV2I	GAAGAC	1 cut(s)	1313
BstZ17I	GTATAC	2 cut(s)	393, 1312
BsuI	GTATCC	1 cut(s)	971
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	884
BtsIMutI	CAGTG	6 cut(s)	582, 611, 684, 1029, 1234, 1302
Cac8I	GCNNGC	3 cut(s)	147, 641, 1015
CaiI	CAGNNNCTG	1 cut(s)	1292
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	148, 316
Csp6I	GTAC	3 cut(s)	547, 587, 891
CviAII	CATG	7 cut(s)	400, 719, 765, 815, 991, 1250, 1297
CviQI	GTAC	3 cut(s)	547, 587, 891
DdeI	CTNAG	6 cut(s)	113, 282, 291, 360, 543, 1355
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco31I	GGTCTC	2 cut(s)	1033, 1143
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	885
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	556, 1380
EcoT22I	ATGCAT	1 cut(s)	766
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	7 cut(s)	403, 722, 768, 818, 994, 1253, 1300
FatI	CATG	7 cut(s)	399, 718, 764, 814, 990, 1249, 1296
FauI	CCCGC	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	392, 1311
Fnu4HI	GCNGC	6 cut(s)	349, 510, 513, 819, 834, 1011
FokI	GGATG	1 cut(s)	891
Fsp4HI	GCNGC	6 cut(s)	349, 510, 513, 819, 834, 1011
FspBI	CTAG	1 cut(s)	1221
GluI	GCNGC	6 cut(s)	349, 510, 513, 819, 834, 1011
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	6 cut(s)	86, 92, 122, 146, 183, 371
Hin1II	CATG	7 cut(s)	403, 722, 768, 818, 994, 1253, 1300
HinfI	GANTC	6 cut(s)	117, 179, 302, 406, 951, 1097
HpaII	CCGG	6 cut(s)	86, 92, 122, 146, 183, 371
HphI	GGTGA	6 cut(s)	415, 494, 511, 797, 818, 1214
Hpy166II	GTNNAC	6 cut(s)	258, 393, 893, 1006, 1302, 1312
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	6 cut(s)	258, 393, 893, 1006, 1302, 1312
Hpy99I	CGWCG	2 cut(s)	174, 209
HpyAV	CCTTC	4 cut(s)	236, 241, 548, 1335
HpyCH4III	ACNGT	7 cut(s)	11, 478, 586, 688, 700, 1229, 1319
HpyCH4V	TGCA	9 cut(s)	348, 503, 512, 599, 764, 983, 1001, 1013, 1253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 1007
HpyF3I	CTNAG	6 cut(s)	113, 282, 291, 360, 543, 1355
Hsp92II	CATG	7 cut(s)	403, 722, 768, 818, 994, 1253, 1300
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	295, 553, 853
Lsp1109I	GCAGC	5 cut(s)	360, 496, 524, 805, 997
LweI	GCATC	6 cut(s)	205, 512, 636, 701, 751, 970
MaeI	CTAG	1 cut(s)	1221
MaeIII	GTNAC	5 cut(s)	614, 772, 806, 838, 1156
MalI	GATC	1 cut(s)	5
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	401, 465, 497, 1313
MhlI	GDGCHC	1 cut(s)	1080
MluCI	AATT	7 cut(s)	339, 456, 593, 676, 826, 1130, 1365
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	2 cut(s)	228, 848
Mph1103I	ATGCAT	1 cut(s)	766
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	4 cut(s)	566, 1049, 1061, 1368
MspI	CCGG	6 cut(s)	86, 92, 122, 146, 183, 371
MspR9I	CCNGG	4 cut(s)	122, 371, 558, 1382
MvaI	CCWGG	2 cut(s)	558, 1382
MwoI	GCNNNNNNNGC	2 cut(s)	509, 1007
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	122, 371
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	7 cut(s)	403, 722, 768, 818, 994, 1253, 1300
NlaIV	GGNNCC	5 cut(s)	90, 317, 555, 849, 1079
NmuCI	GTSAC	2 cut(s)	772, 806
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	4 cut(s)	722, 768, 1253, 1300
PciI	ACATGT	1 cut(s)	1296
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	5 cut(s)	117, 179, 406, 951, 1097
PflFI	GACNNNGTC	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	6 cut(s)	350, 511, 514, 820, 835, 1012
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	1296
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	556, 1380
PspGI	CCWGG	2 cut(s)	556, 1380
PspN4I	GGNNCC	5 cut(s)	90, 317, 555, 849, 1079
PspPI	GGNCC	2 cut(s)	148, 316
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	1292
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	3 cut(s)	548, 588, 892
RsaNI	GTAC	3 cut(s)	547, 587, 891
SaqAI	TTAA	4 cut(s)	566, 1049, 1061, 1368
SatI	GCNGC	6 cut(s)	349, 510, 513, 819, 834, 1011
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	148, 316
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	4 cut(s)	122, 371, 558, 1382
SduI	GDGCHC	1 cut(s)	1080
SfaNI	GCATC	6 cut(s)	205, 512, 636, 701, 751, 970
SfcI	CTRYAG	3 cut(s)	474, 510, 687
SinI	GGWCC	1 cut(s)	316
Sse9I	AATT	7 cut(s)	339, 456, 593, 676, 826, 1130, 1365
SsiI	CCGC	2 cut(s)	298, 833
SspMI	CTAG	1 cut(s)	1221
StyD4I	CCNGG	4 cut(s)	120, 369, 556, 1380
TaaI	ACNGT	7 cut(s)	11, 478, 586, 688, 700, 1229, 1319
TaqI	TCGA	3 cut(s)	1069, 1100, 1162
TasI	AATT	7 cut(s)	339, 456, 593, 676, 826, 1130, 1365
TatI	WGTACW	3 cut(s)	546, 586, 890
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	5 cut(s)	117, 179, 406, 951, 1097
Tru1I	TTAA	4 cut(s)	566, 1049, 1061, 1368
Tru9I	TTAA	4 cut(s)	566, 1049, 1061, 1368
TscAI	CASTG	6 cut(s)	589, 611, 691, 1036, 1234, 1309
TseFI	GTSAC	2 cut(s)	772, 806
TseI	GCWGC	5 cut(s)	348, 509, 512, 818, 1010
Tsp45I	GTSAC	2 cut(s)	772, 806
TspDTI	ATGAA	4 cut(s)	54, 265, 450, 850
TspGWI	ACGGA	3 cut(s)	146, 857, 891
TspRI	CASTG	6 cut(s)	589, 611, 691, 1036, 1234, 1309
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	3 cut(s)	456, 593, 826
XceI	RCATGY	4 cut(s)	722, 768, 1253, 1300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	392, 1311
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	1 cut(s)	1221
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.