Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

11010148 .. 11013507

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G123200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTTTCCTATTCAAAGCTCTGTTTTCAACTCTGTTTTTAACTCTGTTTTTGGTTTCCCACCAAACAAAAGCAGAGGATTTCAATTCCTTCAATGATAATAATAATAATAATAATAATAATGCTTCTGCTTCTTCAACTATTTCTGCTGCTGCTGCTGCTTCCAATTCAGTGCCCAGAAAGCTTGCAGGAAAATGCAACTGGTTCCGTGGTATGTGGGTCTACGACGCTTCCTCCAAGCCCCGCTACGATTCCTCCACCTGTCCTTTCTTAGATCCGCAGTTCGACTGCCAGAAGTACGGTCGTCGTGATTCTACTTACCTCAAATACAGATGGCAGCCCTTCTCCTGTGCCTTGCCCAGGTTTAATGGGTTGAAATTTTTGGAGAAATGGAGGGGGAAGAAGATTATGTTTGTAGGGGACTCACTTAGCTTCAACCAGTGGGTGTCTTTAACATGTATGCTTCATGCATGGGTGCCAAATTCCAGAACAACTCATTTTAAAAGAGATGGATTAGCTTCAGTCACATTCCAGGATTATGGAGTCCAAATACTACTATATCGGACAACATACTTGGTGGATCTTGTCAACGAGAAGGTGGGCCGAGTGTTGAAGCTGGACTCAATTAGGAGCGGCAACGCATGGAGAGGCATGGACCTGCTGATCTTCGACACGTGGCACTGGTGGACCCACACAGGAAGAGCACAGCCATGGGACTATCTGGAAGAGAGGGGCAAATTGTACAAAGATATGAACCGTCTGGTCGCGTTTTATAAAGGACTTACAACTTGGTCTAGATGGGTCAACCGATACGTTGATGCTTCCAAAACCAAGGTCTTCTTCCAAGGGATTTCTCCAACCCACTATGAGGGCAGGGATTGGAACCAACCAACAAGATCATGCTCAAGTGAAACACAACCATTCTTTGGAGCAAAGTACCCAGCAGGCATTCCCTTGTCTTGGGTTGTAGTCAACAAAGTGTTGGCTAGGATTAAGAAACCAGTCTATCTTCTTGACATTACATTTCTCTCACAAATGCGCAAAGATGCTCACCCATCTAAGTATAGTGGCAGCCACGGGGGGACGGATTGCAGCCATTGGTGTCTTCCTGGCCTCCCAGATACTTGGAACGACCTCCTATATGCAGCTCTATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

387

Amino Acids

44.52

Weight (kDa)

9.54

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
Acc16I	TGCGCA	1 cut(s)	1040
Acc36I	ACCTGC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccBSI	CCGCTC	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	767
AciI	CCGC	3 cut(s)	244, 278, 633
AclWI	GGATC	2 cut(s)	269, 588
AcsI	RAATTY	2 cut(s)	377, 481
AcuI	CTGAAG	1 cut(s)	504
AcvI	CACGTG	1 cut(s)	675
AfaI	GTAC	3 cut(s)	299, 743, 938
AfiI	CCNNNNNNNGG	4 cut(s)	360, 868, 926, 960
AflIII	ACRYGT	2 cut(s)	455, 672
AgsI	TTSAA	8 cut(s)	16, 30, 85, 94, 138, 376, 436, 613
AjnI	CCWGG	3 cut(s)	359, 531, 1108
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AluBI	AGCT	6 cut(s)	20, 184, 432, 518, 616, 1148
AluI	AGCT	6 cut(s)	20, 184, 432, 518, 616, 1148
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	2 cut(s)	269, 588
AoxI	GGCC	2 cut(s)	601, 1111
ApeKI	GCWGC	8 cut(s)	149, 152, 155, 158, 337, 1071, 1092, 1145
ApoI	RAATTY	2 cut(s)	377, 481
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	3 cut(s)	601, 655, 687
AsuHPI	GGTGA	1 cut(s)	1043
AvaII	GGWCC	2 cut(s)	655, 687
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	475
BbrPI	CACGTG	1 cut(s)	675
BbsI	GAAGAC	2 cut(s)	829, 1097
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	8 cut(s)	136, 139, 142, 145, 349, 1083, 1104, 1157
BccI	CCATC	4 cut(s)	327, 503, 792, 1063
BciT130I	CCWGG	3 cut(s)	361, 533, 1110
BfaI	CTAG	2 cut(s)	795, 987
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	9 cut(s)	150, 153, 156, 159, 338, 634, 1072, 1093, 1146
BlsI	GCNGC	9 cut(s)	151, 154, 157, 160, 339, 635, 1073, 1094, 1147
Bme1390I	CCNGG	3 cut(s)	361, 533, 1110
Bme18I	GGWCC	2 cut(s)	655, 687
BmgT120I	GGNCC	3 cut(s)	601, 655, 687
BmiI	GGNNCC	4 cut(s)	206, 477, 689, 884
BmrFI	CCNGG	3 cut(s)	361, 533, 1110
BmsI	GCATC	2 cut(s)	808, 1036
BpiI	GAAGAC	2 cut(s)	829, 1097
BpuEI	CTTGAG	1 cut(s)	889
BsaAI	YACGTR	1 cut(s)	675
BsaJI	CCNNGG	6 cut(s)	208, 359, 710, 831, 844, 1075
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 239, 248, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 868, 926, 960
Bse1I	ACTGG	4 cut(s)	206, 439, 686, 1001
BseBI	CCWGG	3 cut(s)	361, 533, 1110
BseDI	CCNNGG	6 cut(s)	208, 359, 710, 831, 844, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	360, 868, 926, 960
BseNI	ACTGG	4 cut(s)	206, 439, 686, 1001
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	8 cut(s)	136, 139, 142, 145, 349, 1083, 1104, 1157
BseYI	CCCAGC	1 cut(s)	940
Bsh1236I	CGCG	1 cut(s)	767
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	603, 1113
BshNI	GGYRCC	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	706
BslFI	GGGAC	3 cut(s)	434, 728, 1096
BslI	CCNNNNNNNGG	4 cut(s)	360, 868, 926, 960
BsmFI	GGGAC	3 cut(s)	434, 728, 1096
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	2 cut(s)	603, 1113
Bsp1286I	GDGCHC	2 cut(s)	177, 706
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	4 cut(s)	274, 580, 663, 896
Bsp19I	CCATGG	1 cut(s)	710
BspACI	CCGC	3 cut(s)	244, 278, 633
BspANI	GGCC	2 cut(s)	603, 1113
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	4 cut(s)	206, 477, 689, 884
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	2 cut(s)	269, 588
BspQI	GCTCTTC	1 cut(s)	694
BspT107I	GGYRCC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	633
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	4 cut(s)	206, 439, 686, 1001
BssECI	CCNNGG	6 cut(s)	208, 359, 710, 831, 844, 1075
BssMI	GATC	4 cut(s)	274, 580, 663, 896
BssT1I	CCWWGG	3 cut(s)	710, 831, 844
Bst2UI	CCWGG	3 cut(s)	361, 533, 1110
Bst4CI	ACNGT	2 cut(s)	302, 758
Bst6I	CTCTTC	2 cut(s)	694, 720
BstAUI	TGTACA	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	675
BstC8I	GCNNGC	2 cut(s)	186, 946
BstDEI	CTNAG	3 cut(s)	271, 428, 1059
BstDSI	CCRYGG	3 cut(s)	208, 710, 1075
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	4 cut(s)	277, 583, 666, 899
BstMBI	GATC	4 cut(s)	274, 580, 663, 896
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 158, 181
BstNI	CCWGG	3 cut(s)	361, 533, 1110
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	3 cut(s)	359, 531, 1108
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	8 cut(s)	136, 139, 142, 145, 349, 1083, 1104, 1157
BstV2I	GAAGAC	2 cut(s)	829, 1097
BstX2I	RGATCY	2 cut(s)	274, 580
BstXI	CCANNNNNNTGG	2 cut(s)	539, 1125
BstYI	RGATCY	2 cut(s)	274, 580
BsuRI	GGCC	2 cut(s)	603, 1113
BtgI	CCRYGG	3 cut(s)	208, 710, 1075
BtsIMutI	CAGTG	3 cut(s)	177, 446, 679
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	186, 946
CfoI	GCGC	1 cut(s)	1041
Cfr13I	GGNCC	3 cut(s)	601, 655, 687
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	298, 742, 937
CviAII	CATG	7 cut(s)	456, 467, 471, 642, 652, 711, 900
CviQI	GTAC	3 cut(s)	298, 742, 937
DdeI	CTNAG	3 cut(s)	271, 428, 1059
DpnI	GATC	4 cut(s)	276, 582, 665, 898
DpnII	GATC	4 cut(s)	274, 580, 663, 896
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	694, 720
EarI	CTCTTC	2 cut(s)	694, 720
Eco130I	CCWWGG	3 cut(s)	710, 831, 844
Eco47I	GGWCC	2 cut(s)	655, 687
Eco57I	CTGAAG	1 cut(s)	504
Eco72I	CACGTG	1 cut(s)	675
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	359, 531, 1108
EcoT14I	CCWWGG	3 cut(s)	710, 831, 844
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	3 cut(s)	710, 831, 844
FaeI	CATG	7 cut(s)	459, 470, 474, 645, 655, 714, 903
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	3 cut(s)	434, 728, 1096
FatI	CATG	7 cut(s)	455, 466, 470, 641, 651, 710, 899
FauI	CCCGC	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	9 cut(s)	150, 153, 156, 159, 338, 634, 1072, 1093, 1146
Fsp4HI	GCNGC	9 cut(s)	150, 153, 156, 159, 338, 634, 1072, 1093, 1146
FspBI	CTAG	2 cut(s)	795, 987
FspI	TGCGCA	1 cut(s)	1040
GlaI	GCGC	1 cut(s)	1040
GluI	GCNGC	9 cut(s)	150, 153, 156, 159, 338, 634, 1072, 1093, 1146
GsaI	CCCAGC	1 cut(s)	944
HaeIII	GGCC	2 cut(s)	603, 1113
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	1041
Hin1II	CATG	7 cut(s)	459, 470, 474, 645, 655, 714, 903
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HincII	GTYRAC	3 cut(s)	589, 805, 973
HindII	GTYRAC	3 cut(s)	589, 805, 973
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	5 cut(s)	251, 311, 422, 543, 620
HphI	GGTGA	1 cut(s)	1043
Hpy166II	GTNNAC	5 cut(s)	223, 589, 687, 805, 973
Hpy188I	TCNGA	1 cut(s)	564
Hpy188III	TCNNGA	5 cut(s)	308, 486, 722, 795, 1013
Hpy8I	GTNNAC	5 cut(s)	223, 589, 687, 805, 973
Hpy99I	CGWCG	2 cut(s)	230, 309
HpyAV	CCTTC	3 cut(s)	100, 352, 589
HpyCH4III	ACNGT	2 cut(s)	302, 758
HpyCH4IV	ACGT	2 cut(s)	674, 813
HpyCH4V	TGCA	5 cut(s)	188, 198, 470, 1092, 1145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 158, 181
HpyF3I	CTNAG	3 cut(s)	271, 428, 1059
HpySE526I	ACGT	2 cut(s)	674, 813
Hsp92II	CATG	7 cut(s)	459, 470, 474, 645, 655, 714, 903
HspAI	GCGC	1 cut(s)	1039
Kzo9I	GATC	4 cut(s)	274, 580, 663, 896
LguI	GCTCTTC	1 cut(s)	694
LmnI	GCTCC	2 cut(s)	630, 929
Lsp1109I	GCAGC	8 cut(s)	136, 139, 142, 145, 349, 1083, 1104, 1157
LweI	GCATC	2 cut(s)	808, 1036
MaeI	CTAG	2 cut(s)	795, 987
MaeII	ACGT	2 cut(s)	674, 813
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	276, 582, 665, 898
MbiI	CCGCTC	1 cut(s)	633
MboI	GATC	4 cut(s)	274, 580, 663, 896
MflI	RGATCY	2 cut(s)	274, 580
MhlI	GDGCHC	2 cut(s)	177, 706
MluCI	AATT	6 cut(s)	85, 166, 377, 481, 624, 737
MlyI	GAGTC	3 cut(s)	416, 552, 614
MmeI	TCCRAC	1 cut(s)	881
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	5 cut(s)	41, 366, 452, 501, 993
MslI	CAYNNNNRTG	1 cut(s)	709
MspR9I	CCNGG	3 cut(s)	361, 533, 1110
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	3 cut(s)	361, 533, 1110
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	3 cut(s)	155, 158, 181
NcoI	CCATGG	1 cut(s)	710
NdeII	GATC	4 cut(s)	274, 580, 663, 896
NlaIII	CATG	7 cut(s)	459, 470, 474, 645, 655, 714, 903
NlaIV	GGNNCC	4 cut(s)	206, 477, 689, 884
NmeAIII	GCCGAG	1 cut(s)	629
NmuCI	GTSAC	1 cut(s)	523
NsbI	TGCGCA	1 cut(s)	1040
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	459
PciI	ACATGT	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	694
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	251, 311
PflMI	CCANNNNNTGG	1 cut(s)	926
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	9 cut(s)	151, 154, 157, 160, 339, 635, 1073, 1094, 1147
PleI	GAGTC	3 cut(s)	416, 551, 614
PmaCI	CACGTG	1 cut(s)	675
PmlI	CACGTG	1 cut(s)	675
PpsI	GAGTC	3 cut(s)	416, 551, 614
Ppu21I	YACGTR	1 cut(s)	675
PscI	ACATGT	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	774
Psp6I	CCWGG	3 cut(s)	359, 531, 1108
PspCI	CACGTG	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	940
PspGI	CCWGG	3 cut(s)	359, 531, 1108
PspN4I	GGNNCC	4 cut(s)	206, 477, 689, 884
PspPI	GGNCC	3 cut(s)	601, 655, 687
PsuI	RGATCY	2 cut(s)	274, 580
RsaI	GTAC	3 cut(s)	299, 743, 938
RsaNI	GTAC	3 cut(s)	298, 742, 937
RseI	CAYNNNNRTG	1 cut(s)	709
SapI	GCTCTTC	1 cut(s)	694
SaqAI	TTAA	5 cut(s)	41, 366, 452, 501, 993
SatI	GCNGC	9 cut(s)	150, 153, 156, 159, 338, 634, 1072, 1093, 1146
Sau3AI	GATC	4 cut(s)	274, 580, 663, 896
Sau96I	GGNCC	3 cut(s)	601, 655, 687
SchI	GAGTC	3 cut(s)	416, 552, 614
ScrFI	CCNGG	3 cut(s)	361, 533, 1110
SduI	GDGCHC	2 cut(s)	177, 706
SfaNI	GCATC	2 cut(s)	808, 1036
SinI	GGWCC	2 cut(s)	655, 687
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
Sse9I	AATT	6 cut(s)	85, 166, 377, 481, 624, 737
SsiI	CCGC	3 cut(s)	244, 278, 633
SspMI	CTAG	2 cut(s)	795, 987
StyD4I	CCNGG	3 cut(s)	359, 531, 1108
StyI	CCWWGG	3 cut(s)	710, 831, 844
TaaI	ACNGT	2 cut(s)	302, 758
TaiI	ACGT	2 cut(s)	677, 816
TaqI	TCGA	2 cut(s)	285, 669
TasI	AATT	6 cut(s)	85, 166, 377, 481, 624, 737
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	2 cut(s)	251, 311
Tru1I	TTAA	5 cut(s)	41, 366, 452, 501, 993
Tru9I	TTAA	5 cut(s)	41, 366, 452, 501, 993
TscAI	CASTG	3 cut(s)	177, 446, 686
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	8 cut(s)	149, 152, 155, 158, 337, 1071, 1092, 1145
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	2 cut(s)	455, 767
TspGWI	ACGGA	2 cut(s)	197, 1100
TspRI	CASTG	3 cut(s)	177, 446, 686
Van91I	CCANNNNNTGG	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	655, 687
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	2 cut(s)	377, 481
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	795, 987
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.