Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000449.1

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

95220 .. 96342

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000449.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgggttacctatccaaagctgcagctgctgctctgtttctaactctgcttctggtttcccaccaaacaaaagcagaggatttcaattccttgttcatcaataacaatgctacaaactcagacgaagtagtagctagaaaccttgcaggaggtaaatgcaactggttcagaggttcatgggtttacgacgcttcccattattctccctacgattccaactgtcccttcatagatccagagttcaactgtcaaaagtatggccgccccgataaatcttacctcaaatatcgatggcagcccttctcttgttcactgcccaggtttaatgggttgaatatgttacagcaatggagggggaagaagattatgtttgttggtgattcactgagtttgaaccagtggcaatccctaacatgtatgcttcattcttgggttccaaattccaagtacattttcaccccattaagaaatggcatagcgtcggtcacattccaggtcacccactattcactgctttttagtgttaatttcaccctctgggtcacgagcacagtgtatttcgtgccctggatcaccttgtacagtgttctgggtcaccatggtgacctgtacaatgtattttatgttctgagtaacgagcacagtgtatttcgtgaccaagagaatgaaaatatacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

226

Amino Acids

26.15

Weight (kDa)

8.23

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	227, 578
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	3 cut(s)	449, 581, 611
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	85, 244, 334, 394
AjnI	CCWGG	3 cut(s)	317, 492, 566
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 437, 469
AleI	CACNNNNGTG	1 cut(s)	600
AluBI	AGCT	3 cut(s)	20, 26, 134
AluI	AGCT	3 cut(s)	20, 26, 134
Alw21I	GWGCWC	2 cut(s)	551, 642
AlwI	GGATC	2 cut(s)	227, 578
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	5 cut(s)	20, 23, 26, 29, 295
ApoI	RAATTY	1 cut(s)	439
AsuHPI	GGTGA	7 cut(s)	389, 448, 490, 523, 565, 587, 614
BaeGI	GKGCMC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	544
Bbv12I	GWGCWC	2 cut(s)	551, 642
BbvI	GCAGC	5 cut(s)	7, 13, 16, 35, 307
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	3 cut(s)	319, 494, 568
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
BlsI	GCNGC	6 cut(s)	22, 25, 28, 31, 263, 297
Bme1390I	CCNGG	3 cut(s)	319, 494, 568
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	3 cut(s)	319, 494, 568
Bsa29I	ATCGAT	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	317, 566, 598
Bse1I	ACTGG	2 cut(s)	167, 397
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	319, 494, 568
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	317, 566, 598
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	132, 377, 620
BseNI	ACTGG	2 cut(s)	167, 397
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	5 cut(s)	7, 13, 16, 35, 307
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	551, 642
BslFI	GGGAC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	551, 567, 642
Bsp1407I	TGTACA	2 cut(s)	579, 609
Bsp143I	GATC	2 cut(s)	232, 570
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	3 cut(s)	131, 378, 621
BspDI	ATCGAT	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	2 cut(s)	227, 578
BsrDI	GCAATG	1 cut(s)	353
BsrGI	TGTACA	2 cut(s)	579, 609
BsrI	ACTGG	2 cut(s)	167, 397
BssECI	CCNNGG	3 cut(s)	317, 566, 598
BssMI	GATC	2 cut(s)	232, 570
BssSI	CACGAG	1 cut(s)	544
BssT1I	CCWWGG	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	544
Bst2UI	CCWGG	3 cut(s)	319, 494, 568
Bst4CI	ACNGT	5 cut(s)	221, 248, 553, 584, 644
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstAUI	TGTACA	2 cut(s)	579, 609
BstDEI	CTNAG	3 cut(s)	118, 386, 629
BstDSI	CCRYGG	1 cut(s)	598
BstEII	GGTNACC	4 cut(s)	5, 496, 593, 602
BstKTI	GATC	2 cut(s)	235, 573
BstMBI	GATC	2 cut(s)	232, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 29
BstNI	CCWGG	3 cut(s)	319, 494, 568
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	4 cut(s)	5, 496, 593, 602
BstSCI	CCNGG	3 cut(s)	317, 492, 566
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	5 cut(s)	7, 13, 16, 35, 307
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	598
BtsI	GCAGTG	2 cut(s)	311, 509
BtsIMutI	CAGTG	7 cut(s)	311, 383, 404, 509, 558, 589, 649
CaiI	CAGNNNCTG	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	289
CseI	GACGC	2 cut(s)	197, 468
Csp6I	GTAC	3 cut(s)	448, 580, 610
CviAII	CATG	3 cut(s)	177, 414, 599
CviJI	RGCY	5 cut(s)	20, 26, 134, 261, 298
CviKI_1	RGCY	5 cut(s)	20, 26, 134, 261, 298
CviQI	GTAC	3 cut(s)	448, 580, 610
DdeI	CTNAG	3 cut(s)	118, 386, 629
DpnI	GATC	2 cut(s)	234, 572
DpnII	GATC	2 cut(s)	232, 570
EaeI	YGGCCR	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	598
Eco91I	GGTNACC	4 cut(s)	5, 496, 593, 602
EcoO65I	GGTNACC	4 cut(s)	5, 496, 593, 602
EcoRII	CCWGG	3 cut(s)	317, 492, 566
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	3 cut(s)	180, 417, 602
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	3 cut(s)	176, 413, 598
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	2 cut(s)	197, 468
Hin1II	CATG	3 cut(s)	180, 417, 602
HinfI	GANTC	2 cut(s)	212, 380
HphI	GGTGA	7 cut(s)	389, 448, 490, 523, 565, 587, 614
Hpy166II	GTNNAC	2 cut(s)	184, 311
Hpy188I	TCNGA	3 cut(s)	121, 170, 630
Hpy188III	TCNNGA	3 cut(s)	236, 544, 653
Hpy8I	GTNNAC	2 cut(s)	184, 311
Hpy99I	CGWCG	2 cut(s)	191, 484
HpyAV	CCTTC	2 cut(s)	235, 310
HpyCH4III	ACNGT	5 cut(s)	221, 248, 553, 584, 644
HpyCH4V	TGCA	3 cut(s)	23, 146, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 29
HpyF3I	CTNAG	3 cut(s)	118, 386, 629
Hsp92II	CATG	3 cut(s)	180, 417, 602
Kzo9I	GATC	2 cut(s)	232, 570
Lsp1109I	GCAGC	5 cut(s)	7, 13, 16, 35, 307
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	9 cut(s)	5, 339, 484, 496, 541, 593, 602, 632, 653
MalI	GATC	2 cut(s)	234, 572
MboI	GATC	2 cut(s)	232, 570
MboII	GAAGA	2 cut(s)	370, 373
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	551, 567, 642
MluCI	AATT	3 cut(s)	85, 439, 526
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	70, 143, 164, 290, 345, 545
MseI	TTAA	3 cut(s)	324, 464, 525
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	319, 494, 568
MvaI	CCWGG	3 cut(s)	319, 494, 568
MwoI	GCNNNNNNNGC	2 cut(s)	26, 29
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	2 cut(s)	232, 570
NlaIII	CATG	3 cut(s)	180, 417, 602
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	6 cut(s)	484, 496, 541, 593, 602, 653
NspI	RCATGY	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	600
PciI	ACATGT	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	212, 380
PkrI	GCNGC	6 cut(s)	22, 25, 28, 31, 263, 297
PscI	ACATGT	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	317, 492, 566
PspEI	GGTNACC	4 cut(s)	5, 496, 593, 602
PspGI	CCWGG	3 cut(s)	317, 492, 566
PspN4I	GGNNCC	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	609, 641
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	449, 581, 611
RsaNI	GTAC	3 cut(s)	448, 580, 610
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	324, 464, 525
SatI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
Sau3AI	GATC	2 cut(s)	232, 570
ScrFI	CCNGG	3 cut(s)	319, 494, 568
SduI	GDGCHC	3 cut(s)	551, 567, 642
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	3 cut(s)	85, 439, 526
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	317, 492, 566
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	5 cut(s)	221, 248, 553, 584, 644
TaqI	TCGA	1 cut(s)	289
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	3 cut(s)	85, 439, 526
TatI	WGTACW	3 cut(s)	447, 579, 609
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	212, 380
Tru1I	TTAA	3 cut(s)	324, 464, 525
Tru9I	TTAA	3 cut(s)	324, 464, 525
TscAI	CASTG	7 cut(s)	318, 390, 404, 516, 558, 589, 649
TseFI	GTSAC	6 cut(s)	484, 496, 541, 593, 602, 653
TseI	GCWGC	5 cut(s)	20, 23, 26, 29, 295
Tsp45I	GTSAC	6 cut(s)	484, 496, 541, 593, 602, 653
TspDTI	ATGAA	5 cut(s)	85, 165, 217, 413, 681
TspRI	CASTG	7 cut(s)	318, 390, 404, 516, 558, 589, 649
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	417
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.