Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Reverse (-)

51076328 .. 51077184

Gene Structure 857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGTTACCTATCCAAAGCTGCAGCTGCTGCTCTGTTTCTAACTCTGCTTCTGGTTTCCCACCAAACAAAAGCAGAGGATTTCAATTCCTTGTTCATCAATAACAATGCTACAAACTCAGACGAAGTAGTAGCTAGAAACCTTGCAGGAGGTAAATGCAACTGGTTCAGAGGTTCATGGGTTTACGACGCTTCCCATTATTCTCCCTACGATTCCAACTGTCCCTTCATAGATCCAGAGTTCAACTGTCAAAAGTATGGCCGCCCCGATAAATCTTACCTCAAATATCGATGGCAGCCCTTCTCTTGTTCACTGCCCAGGTTTAATGGGTTGAATATGTTACAGCAATGGAGGGGGAAGAAGATTATGTTTGTTGGTGATTCACTGAGTTTGAACCAGTGGCAATCCCTAACTTGTATGCTTCATTCTTGGGTTCCAAATTCCAAGTACATTTTCACCCCATTAAGAAATGGCATAGCGTCGGTCACATTCCAGGTCCGTTTTCAATTTCCCCGTTGTTCATGGTCTCAACAAATTTGGTTAGCCAGGAGTATACAATTCCTTGTTTCCTTTTTTTCCTTTTATTTTCCTTTTGGTGTGTGCGATTACTATAATCATTGGATAAAACAGTGCATGCATGTATTGTCTCTTTTTCACACCAGCTTTTCTCAAAAAAGAAAAGTGAATCCTTTTCATTTCAAAATTTCATTGTTCAAGCACGAAAAAATTGAGCTCCAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

247

Amino Acids

29.05

Weight (kDa)

9.48

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	52 - 104	2.6e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	105 - 164	2.3e-19	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	3 cut(s)	439, 534, 702
AfaI	GTAC	1 cut(s)	449
AgsI	TTSAA	7 cut(s)	85, 244, 334, 394, 506, 700, 715
AjnI	CCWGG	3 cut(s)	317, 492, 545
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 437, 469
AluBI	AGCT	5 cut(s)	20, 26, 134, 663, 733
AluI	AGCT	5 cut(s)	20, 26, 134, 663, 733
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	2 cut(s)	531, 651
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	5 cut(s)	20, 23, 26, 29, 295
ApoI	RAATTY	3 cut(s)	439, 534, 702
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	389, 448
AvaII	GGWCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	5 cut(s)	7, 13, 16, 35, 307
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	3 cut(s)	319, 494, 547
BcoDI	GTCTC	2 cut(s)	531, 651
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
BlsI	GCNGC	6 cut(s)	22, 25, 28, 31, 263, 297
Bme1390I	CCNGG	3 cut(s)	319, 494, 547
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	3 cut(s)	319, 494, 547
Bsa29I	ATCGAT	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	167, 397
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	3 cut(s)	319, 494, 547
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	132, 377
BseNI	ACTGG	2 cut(s)	167, 397
BseXI	GCAGC	5 cut(s)	7, 13, 16, 35, 307
BshFI	GGCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	735
BslFI	GGGAC	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	531, 651
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	131, 378
BspDI	ATCGAT	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	167, 397
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	232
BssNAI	GTATAC	1 cut(s)	554
Bst1107I	GTATAC	1 cut(s)	554
Bst2UI	CCWGG	3 cut(s)	319, 494, 547
Bst4CI	ACNGT	3 cut(s)	221, 248, 630
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	2 cut(s)	118, 386
BstEII	GGTNACC	1 cut(s)	5
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	531, 651
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 29
BstNI	CCWGG	3 cut(s)	319, 494, 547
BstNSI	RCATGY	2 cut(s)	637, 641
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	3 cut(s)	317, 492, 545
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	5 cut(s)	7, 13, 16, 35, 307
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	554
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	4 cut(s)	311, 383, 404, 635
Cac8I	GCNNGC	1 cut(s)	635
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	496
ClaI	ATCGAT	1 cut(s)	289
CseI	GACGC	2 cut(s)	197, 468
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	4 cut(s)	177, 522, 634, 638
CviJI	RGCY	8 cut(s)	20, 26, 134, 261, 298, 545, 663, 733
CviKI_1	RGCY	8 cut(s)	20, 26, 134, 261, 298, 545, 663, 733
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	118, 386
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	496
Eco53kI	GAGCTC	1 cut(s)	733
Eco91I	GGTNACC	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	733
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	3 cut(s)	317, 492, 545
EcoT22I	ATGCAT	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	4 cut(s)	180, 525, 637, 641
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	176, 521, 633, 637
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	2 cut(s)	197, 468
Hin1II	CATG	4 cut(s)	180, 525, 637, 641
HinfI	GANTC	3 cut(s)	212, 380, 685
HphI	GGTGA	2 cut(s)	389, 448
Hpy166II	GTNNAC	3 cut(s)	184, 311, 554
Hpy188I	TCNGA	2 cut(s)	121, 170
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	3 cut(s)	184, 311, 554
Hpy99I	CGWCG	2 cut(s)	191, 484
HpyAV	CCTTC	2 cut(s)	235, 310
HpyCH4III	ACNGT	3 cut(s)	221, 248, 630
HpyCH4V	TGCA	5 cut(s)	23, 146, 159, 633, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 29
HpyF3I	CTNAG	2 cut(s)	118, 386
Hsp92II	CATG	4 cut(s)	180, 525, 637, 641
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	5 cut(s)	7, 13, 16, 35, 307
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	5, 339, 484
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	370, 373
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	7 cut(s)	85, 439, 506, 534, 557, 702, 726
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	70, 143, 164, 290, 345
Mph1103I	ATGCAT	1 cut(s)	639
MseI	TTAA	2 cut(s)	324, 464
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	319, 494, 547
MvaI	CCWGG	3 cut(s)	319, 494, 547
MwoI	GCNNNNNNNGC	2 cut(s)	26, 29
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	180, 525, 637, 641
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	2 cut(s)	637, 641
PaeI	GCATGC	1 cut(s)	637
PfeI	GAWTC	3 cut(s)	212, 380, 685
PkrI	GCNGC	6 cut(s)	22, 25, 28, 31, 263, 297
Psp124BI	GAGCTC	1 cut(s)	735
Psp6I	CCWGG	3 cut(s)	317, 492, 545
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	317, 492, 545
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	324, 464
SatI	GCNGC	6 cut(s)	21, 24, 27, 30, 262, 296
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	496
ScrFI	CCNGG	3 cut(s)	319, 494, 547
SduI	GDGCHC	1 cut(s)	735
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	496
SphI	GCATGC	1 cut(s)	637
Sse9I	AATT	7 cut(s)	85, 439, 506, 534, 557, 702, 726
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	317, 492, 545
TaaI	ACNGT	3 cut(s)	221, 248, 630
TaqI	TCGA	1 cut(s)	289
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	7 cut(s)	85, 439, 506, 534, 557, 702, 726
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	212, 380, 685
Tru1I	TTAA	2 cut(s)	324, 464
Tru9I	TTAA	2 cut(s)	324, 464
TscAI	CASTG	4 cut(s)	318, 390, 404, 635
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	5 cut(s)	20, 23, 26, 29, 295
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	7 cut(s)	85, 165, 217, 413, 510, 683, 696
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	4 cut(s)	318, 390, 404, 635
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	3 cut(s)	439, 534, 702
XceI	RCATGY	2 cut(s)	637, 641
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.