MD17G1232900.v1.1

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
28120210 .. 28123846
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1232900.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGGTTTCCTATTCAGAGCTCTGCTTTTAACTCTGTTTTTAGTTTCCCACCAAACACAAGCACAGGAATTCAATTCCTCTTTCTCCTCCAATAATGCTTCTTCTGCTTCTGCTACCAGTACTACTAGTACTACCAGCTCAGTCGCCAGAAGGCTCGCAGGAAAATGCAACTGGTTCCGCGGTACATGGGTCTACGATGCTTCTGCTAAACCATCCTACTATTCCTCCACCTGTCCCTTCTTAGATCCACAGTTCGACTGCCTAAAGTACGGCCGCCGCGACACCGCTTTCCTCAAATACAGATGGCAACCCTTCTCCTGCGCCCTTCCCAGGTTCAATGGGTTGTATTTCTTGGAGAAATGGAGGGGGAAGAAGATCATGTTTGTGGGTGACTCAATGAGTTTCAATCATTGGGTGTCTTTAACATGTATGCTTCATGCCTGGGTGCCAAATTCCAGGACTTCATATGTTAAGACAAATAGTTTATCTTCAGTCACATTCCAGGACTATGGAGTACAAATACTGCTGTATCGCACACCATACCTGGTAGATCTTGTCAACGAGAACGTGGGACGAGTGTTGAAGCTTGACTCAATTACGAATGGCAAAGCGTGGAGAGGCATGGACATGCTGATCTTCGACACGTGGCACTGGTGGACTCACACCGGAAGAACACAGCCATGGGACTACCTGGAAGAAAGGGGTAAATTGTACAAAGATATGAACCGTCTGGTCGCATTTTACAAGGGAATGACAACTTGGGGCAGATGGGTCGACCGATATGTCGATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATTTCTCCTACCCATTACGAGGGCAAGGAGTGGAATCAGCCAACAAGATCCTGCGCAAGTGAAACGCAACCATTCTTTGAGAAAAAGTATCCAGCAGGAGTACCTTTGTCTTGGGTTGTAGTCAACAAAGTGCTGGCTAGGATTAAGAAGCCAGTCTATCTTCTCGACATCACGCTTCTTTCACAAATCCGCAAAGATGCACACCCATCCAAGTACAGCGGCCACCACGGCGGCACGGACTGCAGCCACTGGTGCCTTCCCGGTCTGCCGGATACTTGGAATCAGCTCCTCTATGCTGCTCTATTTGCTTGA

Protein Analysis

377

Amino Acids

43.45

Weight (kDa)

9.49

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 55 - 107 2e-20 PMR5 N terminal Domain
PC-Esterase PF13839 109 - 372 9.7e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 782
Acc16I TGCGCA 1 cut(s) 874
AccB1I GGYRCC 2 cut(s) 445, 1071
AccI GTMKAC 2 cut(s) 192, 774
AccII CGCG 2 cut(s) 180, 279
AciI CCGC 8 cut(s) 178, 180, 274, 277, 285, 1009, 1038, 1050
AclWI GGATC 3 cut(s) 239, 782, 861
AcoI YGGCCR 2 cut(s) 271, 1039
AcsI RAATTY 2 cut(s) 68, 451
AcuI CTGAAG 1 cut(s) 474
AcvI CACGTG 1 cut(s) 645
AfaI GTAC 8 cut(s) 121, 130, 184, 269, 516, 713, 921, 1034
AfiI CCNNNNNNNGG 2 cut(s) 330, 838
AflIII ACRYGT 2 cut(s) 425, 642
AgsI TTSAA 4 cut(s) 73, 337, 406, 583
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 6 cut(s) 329, 440, 455, 501, 543, 690
AjuI GAANNNNNNNTTGG 4 cut(s) 742, 774, 794, 826
AluBI AGCT 4 cut(s) 20, 138, 586, 1105
AluI AGCT 4 cut(s) 20, 138, 586, 1105
Alw21I GWGCWC 1 cut(s) 22
AlwI GGATC 3 cut(s) 239, 782, 861
AlwNI CAGNNNCTG 1 cut(s) 1068
AoxI GGCC 2 cut(s) 271, 1039
ApeKI GCWGC 2 cut(s) 1062, 1115
ApoI RAATTY 2 cut(s) 68, 451
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AspLEI GCGC 2 cut(s) 323, 875
AsuC2I CCSGG 1 cut(s) 1080
AsuHPI GGTGA 1 cut(s) 401
BaeI ACNNNNGTAYC 4 cut(s) 174, 207, 512, 545
BanI GGYRCC 2 cut(s) 445, 1071
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 799
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 1074, 1102
BccI CCATC 4 cut(s) 220, 297, 762, 1033
BceAI ACGGC 2 cut(s) 286, 1063
BcgI CGANNNNNNTGC 4 cut(s) 185, 219, 754, 788
BciT130I CCWGG 6 cut(s) 331, 442, 457, 503, 545, 692
BciVI GTATCC 2 cut(s) 918, 1084
BcnI CCSGG 1 cut(s) 1080
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 126, 957
BfmI CTRYAG 1 cut(s) 1060
BfuI GTATCC 2 cut(s) 918, 1084
BglI GCCNNNNNGGC 1 cut(s) 1047
BglII AGATCT 1 cut(s) 550
BisI GCNGC 6 cut(s) 274, 277, 1039, 1051, 1063, 1116
BlsI GCNGC 6 cut(s) 275, 278, 1040, 1052, 1064, 1117
BmcAI AGTACT 2 cut(s) 121, 130
Bme1390I CCNGG 7 cut(s) 331, 442, 457, 503, 545, 692, 1080
BmiI GGNNCC 3 cut(s) 176, 447, 1073
BmrFI CCNGG 7 cut(s) 331, 442, 457, 503, 545, 692, 1080
BmsI GCATC 2 cut(s) 187, 1006
BpiI GAAGAC 1 cut(s) 799
BpuMI CCSGG 1 cut(s) 1080
BsaAI YACGTR 1 cut(s) 645
BsaJI CCNNGG 7 cut(s) 178, 329, 441, 680, 801, 814, 1045
BsaWI WCCGGW 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 838
Bse1I ACTGG 5 cut(s) 117, 176, 656, 971, 1073
BseBI CCWGG 6 cut(s) 331, 442, 457, 503, 545, 692
BseDI CCNNGG 7 cut(s) 178, 329, 441, 680, 801, 814, 1045
BseGI GGATG 2 cut(s) 212, 1025
BseLI CCNNNNNNNGG 2 cut(s) 330, 838
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 5 cut(s) 117, 176, 656, 971, 1073
BseRI GAGGAG 2 cut(s) 76, 1097
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 1074, 1102
Bsh1236I CGCG 2 cut(s) 180, 279
Bsh1285I CGRYCG 2 cut(s) 274, 778
BshFI GGCC 2 cut(s) 273, 1041
BshNI GGYRCC 2 cut(s) 445, 1071
BsiEI CGRYCG 2 cut(s) 274, 778
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 3 cut(s) 666, 1080, 1088
BslFI GGGAC 3 cut(s) 219, 585, 698
BslI CCNNNNNNNGG 2 cut(s) 330, 838
BsmFI GGGAC 3 cut(s) 219, 585, 698
BsnI GGCC 2 cut(s) 273, 1041
Bsp1286I GDGCHC 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 6 cut(s) 244, 375, 550, 633, 787, 866
Bsp19I CCATGG 1 cut(s) 680
BspACI CCGC 8 cut(s) 178, 180, 274, 277, 285, 1009, 1038, 1050
BspANI GGCC 2 cut(s) 273, 1041
BspCNI CTCAG 1 cut(s) 152
BspFNI CGCG 2 cut(s) 180, 279
BspLI GGNNCC 3 cut(s) 176, 447, 1073
BspMAI CTGCAG 1 cut(s) 1064
BspPI GGATC 3 cut(s) 239, 782, 861
BspT107I GGYRCC 2 cut(s) 445, 1071
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 5 cut(s) 117, 176, 656, 971, 1073
BssECI CCNNGG 7 cut(s) 178, 329, 441, 680, 801, 814, 1045
BssMI GATC 6 cut(s) 244, 375, 550, 633, 787, 866
BssT1I CCWWGG 3 cut(s) 680, 801, 814
Bst2UI CCWGG 6 cut(s) 331, 442, 457, 503, 545, 692
Bst4CI ACNGT 2 cut(s) 252, 728
BstAPI GCANNNNNTGC 1 cut(s) 1059
BstAUI TGTACA 1 cut(s) 711
BstBAI YACGTR 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 156, 954
BstDEI CTNAG 2 cut(s) 139, 241
BstDSI CCRYGG 3 cut(s) 178, 680, 1045
BstF5I GGATG 2 cut(s) 212, 1025
BstFNI CGCG 2 cut(s) 180, 279
BstHHI GCGC 2 cut(s) 323, 875
BstKTI GATC 6 cut(s) 247, 378, 553, 636, 790, 869
BstMBI GATC 6 cut(s) 244, 375, 550, 633, 787, 866
BstMCI CGRYCG 2 cut(s) 274, 778
BstMWI GCNNNNNNNGC 5 cut(s) 104, 1047, 1059, 1071, 1124
BstNI CCWGG 6 cut(s) 331, 442, 457, 503, 545, 692
BstNSI RCATGY 2 cut(s) 429, 631
BstSCI CCNGG 7 cut(s) 329, 440, 455, 501, 543, 690, 1078
BstSFI CTRYAG 1 cut(s) 1060
BstUI CGCG 2 cut(s) 180, 279
BstV1I GCAGC 2 cut(s) 1074, 1102
BstV2I GAAGAC 1 cut(s) 799
BstX2I RGATCY 3 cut(s) 244, 550, 866
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 3 cut(s) 244, 550, 866
BstZI CGGCCG 1 cut(s) 271
BsuI GTATCC 2 cut(s) 918, 1084
BsuRI GGCC 2 cut(s) 273, 1041
BtgI CCRYGG 3 cut(s) 178, 680, 1045
BtsCI GGATG 2 cut(s) 212, 1025
BtsIMutI CAGTG 2 cut(s) 649, 1066
Cac8I GCNNGC 2 cut(s) 156, 954
CaiI CAGNNNCTG 1 cut(s) 1068
CfoI GCGC 2 cut(s) 323, 875
Cfr42I CCGCGG 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 543
Csp6I GTAC 8 cut(s) 120, 129, 183, 268, 515, 712, 920, 1033
CviAII CATG 7 cut(s) 186, 379, 426, 437, 622, 628, 681
CviQI GTAC 8 cut(s) 120, 129, 183, 268, 515, 712, 920, 1033
DdeI CTNAG 2 cut(s) 139, 241
DpnI GATC 6 cut(s) 246, 377, 552, 635, 789, 868
DpnII GATC 6 cut(s) 244, 375, 550, 633, 787, 866
DrdI GACNNNNNNGTC 1 cut(s) 782
DseDI GACNNNNNNGTC 1 cut(s) 782
EaeI YGGCCR 2 cut(s) 271, 1039
EagI CGGCCG 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 680, 801, 814
Eco24I GRGCYC 1 cut(s) 22
Eco52I CGGCCG 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 474
Eco72I CACGTG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 6 cut(s) 329, 440, 455, 501, 543, 690
EcoT14I CCWWGG 3 cut(s) 680, 801, 814
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 3 cut(s) 680, 801, 814
FaeI CATG 7 cut(s) 189, 382, 429, 440, 625, 631, 684
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 3 cut(s) 219, 585, 698
FatI CATG 7 cut(s) 185, 378, 425, 436, 621, 627, 680
FauNDI CATATG 1 cut(s) 466
FblI GTMKAC 2 cut(s) 192, 774
Fnu4HI GCNGC 6 cut(s) 274, 277, 1039, 1051, 1063, 1116
FokI GGATG 2 cut(s) 199, 1012
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 274, 277, 1039, 1051, 1063, 1116
FspBI CTAG 2 cut(s) 126, 957
FspI TGCGCA 1 cut(s) 874
GlaI GCGC 2 cut(s) 322, 874
GluI GCNGC 6 cut(s) 274, 277, 1039, 1051, 1063, 1116
HaeIII GGCC 2 cut(s) 273, 1041
HapII CCGG 3 cut(s) 666, 1080, 1088
HhaI GCGC 2 cut(s) 323, 875
Hin1II CATG 7 cut(s) 189, 382, 429, 440, 625, 631, 684
Hin6I GCGC 2 cut(s) 321, 873
HinP1I GCGC 2 cut(s) 321, 873
HincII GTYRAC 3 cut(s) 559, 775, 943
HindII GTYRAC 3 cut(s) 559, 775, 943
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 5 cut(s) 392, 590, 658, 853, 1099
HpaII CCGG 3 cut(s) 666, 1080, 1088
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 5 cut(s) 193, 559, 657, 775, 943
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 983
Hpy8I GTNNAC 5 cut(s) 193, 559, 657, 775, 943
HpyAV CCTTC 6 cut(s) 144, 247, 322, 335, 801, 1085
HpyCH4III ACNGT 2 cut(s) 252, 728
HpyCH4IV ACGT 2 cut(s) 567, 644
HpyCH4V TGCA 3 cut(s) 168, 1019, 1062
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 1047, 1059, 1071, 1124
HpyF3I CTNAG 2 cut(s) 139, 241
HpySE526I ACGT 2 cut(s) 567, 644
Hsp92II CATG 7 cut(s) 189, 382, 429, 440, 625, 631, 684
HspAI GCGC 2 cut(s) 321, 873
KspI CCGCGG 1 cut(s) 181
Kzo9I GATC 6 cut(s) 244, 375, 550, 633, 787, 866
LmnI GCTCC 1 cut(s) 1110
Lsp1109I GCAGC 2 cut(s) 1074, 1102
LweI GCATC 2 cut(s) 187, 1006
MabI ACCWGGT 1 cut(s) 543
MaeI CTAG 2 cut(s) 126, 957
MaeII ACGT 2 cut(s) 567, 644
MaeIII GTNAC 2 cut(s) 389, 493
MalI GATC 6 cut(s) 246, 377, 552, 635, 789, 868
MboI GATC 6 cut(s) 244, 375, 550, 633, 787, 866
MflI RGATCY 3 cut(s) 244, 550, 866
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 5 cut(s) 68, 73, 451, 594, 707
MlyI GAGTC 3 cut(s) 386, 584, 652
MnlI CCTC 8 cut(s) 88, 97, 235, 302, 357, 611, 832, 1118
MseI TTAA 4 cut(s) 29, 422, 471, 963
MslI CAYNNNNRTG 3 cut(s) 383, 626, 679
MspA1I CMGCKG 2 cut(s) 180, 1038
MspI CCGG 3 cut(s) 666, 1080, 1088
MspR9I CCNGG 7 cut(s) 331, 442, 457, 503, 545, 692, 1080
MvaI CCWGG 6 cut(s) 331, 442, 457, 503, 545, 692
MvnI CGCG 2 cut(s) 180, 279
MwoI GCNNNNNNNGC 5 cut(s) 104, 1047, 1059, 1071, 1124
NciI CCSGG 1 cut(s) 1080
NcoI CCATGG 1 cut(s) 680
NdeI CATATG 1 cut(s) 466
NdeII GATC 6 cut(s) 244, 375, 550, 633, 787, 866
NlaIII CATG 7 cut(s) 189, 382, 429, 440, 625, 631, 684
NlaIV GGNNCC 3 cut(s) 176, 447, 1073
NmuCI GTSAC 2 cut(s) 389, 493
NsbI TGCGCA 1 cut(s) 874
NspI RCATGY 2 cut(s) 429, 631
PciI ACATGT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 853, 1099
PfoI TCCNGGA 2 cut(s) 455, 501
PkrI GCNGC 6 cut(s) 275, 278, 1040, 1052, 1064, 1117
PleI GAGTC 3 cut(s) 386, 584, 652
PmaCI CACGTG 1 cut(s) 645
PmlI CACGTG 1 cut(s) 645
PpsI GAGTC 3 cut(s) 386, 584, 652
Ppu21I YACGTR 1 cut(s) 645
PscI ACATGT 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 6 cut(s) 329, 440, 455, 501, 543, 690
PspCI CACGTG 1 cut(s) 645
PspGI CCWGG 6 cut(s) 329, 440, 455, 501, 543, 690
PspN4I GGNNCC 3 cut(s) 176, 447, 1073
PstI CTGCAG 1 cut(s) 1064
PstNI CAGNNNCTG 1 cut(s) 1068
PsuI RGATCY 3 cut(s) 244, 550, 866
RsaI GTAC 8 cut(s) 121, 130, 184, 269, 516, 713, 921, 1034
RsaNI GTAC 8 cut(s) 120, 129, 183, 268, 515, 712, 920, 1033
RseI CAYNNNNRTG 3 cut(s) 383, 626, 679
SacI GAGCTC 1 cut(s) 22
SacII CCGCGG 1 cut(s) 181
SalI GTCGAC 1 cut(s) 773
SaqAI TTAA 4 cut(s) 29, 422, 471, 963
SatI GCNGC 6 cut(s) 274, 277, 1039, 1051, 1063, 1116
Sau3AI GATC 6 cut(s) 244, 375, 550, 633, 787, 866
ScaI AGTACT 2 cut(s) 121, 130
SchI GAGTC 3 cut(s) 386, 584, 652
ScrFI CCNGG 7 cut(s) 331, 442, 457, 503, 545, 692, 1080
SduI GDGCHC 1 cut(s) 22
SexAI ACCWGGT 1 cut(s) 543
SfaNI GCATC 2 cut(s) 187, 1006
SfcI CTRYAG 1 cut(s) 1060
Sfr303I CCGCGG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 181
SmiMI CAYNNNNRTG 3 cut(s) 383, 626, 679
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 5 cut(s) 68, 73, 451, 594, 707
SsiI CCGC 8 cut(s) 178, 180, 274, 277, 285, 1009, 1038, 1050
SspMI CTAG 2 cut(s) 126, 957
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 7 cut(s) 329, 440, 455, 501, 543, 690, 1078
StyI CCWWGG 3 cut(s) 680, 801, 814
TaaI ACNGT 2 cut(s) 252, 728
TaiI ACGT 2 cut(s) 570, 647
TaqI TCGA 5 cut(s) 255, 639, 774, 786, 984
TaqII GACCGA 1 cut(s) 792
TasI AATT 5 cut(s) 68, 73, 451, 594, 707
TatI WGTACW 5 cut(s) 119, 128, 514, 711, 1032
TauI GCSGC 4 cut(s) 276, 279, 1041, 1053
TfiI GAWTC 2 cut(s) 853, 1099
Tru1I TTAA 4 cut(s) 29, 422, 471, 963
Tru9I TTAA 4 cut(s) 29, 422, 471, 963
TscAI CASTG 2 cut(s) 656, 1073
TseFI GTSAC 2 cut(s) 389, 493
TseI GCWGC 2 cut(s) 1062, 1115
Tsp45I GTSAC 2 cut(s) 389, 493
TspDTI ATGAA 3 cut(s) 425, 453, 737
TspGWI ACGGA 1 cut(s) 1070
TspRI CASTG 2 cut(s) 656, 1073
XapI RAATTY 2 cut(s) 68, 451
XceI RCATGY 2 cut(s) 429, 631
XmiI GTMKAC 2 cut(s) 192, 774
XspI CTAG 2 cut(s) 126, 957
ZrmI AGTACT 2 cut(s) 121, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.