Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

41007449 .. 41010811

Gene Structure 3363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAAACCCAAGAAAGAGGAATAATGGGTTACCTATCCAAAGCTGCAGCTGCTGCTCTGTTTCTAACTCTGCTTCTGGCTTCCCACCAAACAAAAGCAGAGGATTTCAATTCCTTGTTCAACAATAACAATGCTACAAACTCAGAGGAAGTAGTAGCTAGAACCCTTGCAGGAGGTAAATGCAACTGGTTCAGAGGTTCATGGGTTTACGACGCTTCCCATTATCCTCCCTACGATTCCAACTGTCCCTTCATAGATCCAGAGTTCAACTGCCAAAAGTATGGCCGCCCCGATAAATCTTACCTCAAATATCGATGGCAGCCCTTTTCTTGTTCACTGCCCAGGTTTAATGGGTTGAATATGTTACAGCAATGGAGGGGGAAGAAGATTATGTTTGTTGGTGATTCACTGAGTTTGAATCAGTGGCAATCCCTAACATGTATGCTTCATTCTTGGGTACCAAATTCCAAGTACATTTTCACCCCATTAAGAAATGGCATAGCGTCGGTCACATTCCAGGACTATGGTGTTCAGATACTACTATACCACACAACGTACCTGGTGGATATTGACAGCGAGAAGGTTGGAAGAGTCTTGAAGCTCGACTCCATTAGGGGCGGTAACGCCTGGAAAGGCATGGACGTCCTGGTCTTCGACACGTGGCATTGGTGGACTCACACCGGAAGAACCCAACCATGGGACTACGTACAAGATGGGGGTAGATTGTACAAGGATATGAACCGTCTGGTGGCTTTTTACAAAGGACTAACCACTTGGGGTAGATGGGTCGATCGGAATGTTAATCCTTCCAAAACCAAGGTCTTCTTCCAGGGCATCTCTCCCATTCATTACGAGGGCAGGGATTGGAGTCAACCATCAAGGTCATGCAAAGGTGAAACACAACCATACTTAGGCAGAAGCTACCCAGCAGGGATACCCCAAGCATGGGTAGTTGTTAACAAAGTGTTGAGTAGGATTAGGAAACCAGTTTATCTTCTTGACATTACATCCCTGTCACAACTGCGTAAAGAAGCACACCCTTCTGTTTATAGCGGCGAGCATTCCGGCACAGACTGCAGCCATTGGTGTCTTCCGGGGCTGCCGGATACTTGGAATGACTTGCTATATGGGGCTCTATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

381

Amino Acids

43.75

Weight (kDa)

9.03

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	60 - 112	6.9e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	113 - 376	1.6e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AatII	GACGTC	1 cut(s)	645
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AciI	CCGC	3 cut(s)	286, 618, 1053
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	463
AcvI	CACGTG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	642
AfaI	GTAC	5 cut(s)	459, 473, 557, 708, 728
AfiI	CCNNNNNNNGG	6 cut(s)	696, 697, 748, 911, 945, 946
AflIII	ACRYGT	2 cut(s)	437, 657
AgsI	TTSAA	6 cut(s)	109, 121, 268, 358, 418, 598
AjnI	CCWGG	6 cut(s)	341, 516, 558, 626, 645, 828
AjuI	GAANNNNNNNTTGG	6 cut(s)	233, 265, 461, 493, 809, 841
AluBI	AGCT	5 cut(s)	44, 50, 158, 601, 921
AluI	AGCT	5 cut(s)	44, 50, 158, 601, 921
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	7 cut(s)	44, 47, 50, 53, 319, 1077, 1099
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
Asp718I	GGTACC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	1095
AsuHPI	GGTGA	3 cut(s)	413, 472, 905
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	1135
BbrPI	CACGTG	1 cut(s)	660
BbsI	GAAGAC	3 cut(s)	643, 814, 1082
BbvI	GCAGC	7 cut(s)	31, 37, 40, 59, 331, 1086, 1089
BccI	CCATC	4 cut(s)	309, 707, 777, 883
BciT130I	CCWGG	6 cut(s)	343, 518, 560, 628, 647, 830
BciVI	GTATCC	2 cut(s)	927, 1099
BcnI	CCSGG	1 cut(s)	1095
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	45, 1075
BfuI	GTATCC	2 cut(s)	927, 1099
BisI	GCNGC	9 cut(s)	45, 48, 51, 54, 286, 320, 1054, 1078, 1100
BlsI	GCNGC	9 cut(s)	46, 49, 52, 55, 287, 321, 1055, 1079, 1101
Bme1390I	CCNGG	7 cut(s)	343, 518, 560, 628, 647, 830, 1095
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	7 cut(s)	343, 518, 560, 628, 647, 830, 1095
BmsI	GCATC	1 cut(s)	843
BpiI	GAAGAC	3 cut(s)	643, 814, 1082
BpuMI	CCSGG	1 cut(s)	1095
Bsa29I	ATCGAT	1 cut(s)	313
BsaAI	YACGTR	2 cut(s)	660, 706
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	5 cut(s)	341, 695, 816, 829, 1094
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	6 cut(s)	696, 697, 748, 911, 945, 946
Bse1I	ACTGG	2 cut(s)	191, 986
Bse3DI	GCAATG	1 cut(s)	377
BseBI	CCWGG	6 cut(s)	343, 518, 560, 628, 647, 830
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	5 cut(s)	341, 695, 816, 829, 1094
BseGI	GGATG	1 cut(s)	1007
BseLI	CCNNNNNNNGG	6 cut(s)	696, 697, 748, 911, 945, 946
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	156, 401
BseNI	ACTGG	2 cut(s)	191, 986
BseXI	GCAGC	7 cut(s)	31, 37, 40, 59, 331, 1086, 1089
BseYI	CCCAGC	1 cut(s)	925
Bsh1285I	CGRYCG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	793
BsiSI	CCGG	4 cut(s)	681, 1065, 1094, 1103
BslFI	GGGAC	2 cut(s)	231, 713
BslI	CCNNNNNNNGG	6 cut(s)	696, 697, 748, 911, 945, 946
BsmFI	GGGAC	2 cut(s)	231, 713
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	1135
Bsp1407I	TGTACA	1 cut(s)	726
Bsp143I	GATC	2 cut(s)	256, 790
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	3 cut(s)	286, 618, 1053
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	155, 402
BspDI	ATCGAT	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	459
BspMAI	CTGCAG	2 cut(s)	49, 1079
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	191, 986
BssECI	CCNNGG	5 cut(s)	341, 695, 816, 829, 1094
BssMI	GATC	2 cut(s)	256, 790
BssNI	GRCGYC	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	695, 816
Bst2UI	CCWGG	6 cut(s)	343, 518, 560, 628, 647, 830
Bst4CI	ACNGT	2 cut(s)	245, 743
Bst6I	CTCTTC	1 cut(s)	583
BstACI	GRCGYC	1 cut(s)	642
BstAPI	GCANNNNNTGC	2 cut(s)	53, 1074
BstAUI	TGTACA	1 cut(s)	726
BstBAI	YACGTR	2 cut(s)	660, 706
BstC8I	GCNNGC	1 cut(s)	1058
BstDEI	CTNAG	3 cut(s)	142, 410, 910
BstDSI	CCRYGG	1 cut(s)	695
BstEII	GGTNACC	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	1007
BstKTI	GATC	2 cut(s)	259, 793
BstMBI	GATC	2 cut(s)	256, 790
BstMCI	CGRYCG	1 cut(s)	793
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 53, 1074
BstNI	CCWGG	6 cut(s)	343, 518, 560, 628, 647, 830
BstNSI	RCATGY	1 cut(s)	441
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	7 cut(s)	341, 516, 558, 626, 645, 828, 1093
BstSFI	CTRYAG	2 cut(s)	45, 1075
BstSNI	TACGTA	1 cut(s)	706
BstV1I	GCAGC	7 cut(s)	31, 37, 40, 59, 331, 1086, 1089
BstV2I	GAAGAC	3 cut(s)	643, 814, 1082
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	2 cut(s)	281, 524
BstYI	RGATCY	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	313
BsuI	GTATCC	2 cut(s)	927, 1099
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	1 cut(s)	1007
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	3 cut(s)	335, 407, 428
Cac8I	GCNNGC	1 cut(s)	1058
CaiI	CAGNNNCTG	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	313
CseI	GACGC	2 cut(s)	221, 492
CsiI	ACCWGGT	1 cut(s)	558
Csp6I	GTAC	5 cut(s)	458, 472, 556, 707, 727
CviAII	CATG	6 cut(s)	201, 438, 637, 696, 885, 945
CviQI	GTAC	5 cut(s)	458, 472, 556, 707, 727
DdeI	CTNAG	3 cut(s)	142, 410, 910
DpnI	GATC	2 cut(s)	258, 792
DpnII	GATC	2 cut(s)	256, 790
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco105I	TACGTA	1 cut(s)	706
Eco130I	CCWWGG	2 cut(s)	695, 816
Eco24I	GRGCYC	1 cut(s)	1135
Eco72I	CACGTG	1 cut(s)	660
Eco91I	GGTNACC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	29
EcoRII	CCWGG	6 cut(s)	341, 516, 558, 626, 645, 828
EcoT14I	CCWWGG	2 cut(s)	695, 816
EcoT38I	GRGCYC	1 cut(s)	1135
ErhI	CCWWGG	2 cut(s)	695, 816
FaeI	CATG	6 cut(s)	204, 441, 640, 699, 888, 948
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	231, 713
FatI	CATG	6 cut(s)	200, 437, 636, 695, 884, 944
Fnu4HI	GCNGC	9 cut(s)	45, 48, 51, 54, 286, 320, 1054, 1078, 1100
FokI	GGATG	1 cut(s)	994
FriOI	GRGCYC	1 cut(s)	1135
Fsp4HI	GCNGC	9 cut(s)	45, 48, 51, 54, 286, 320, 1054, 1078, 1100
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	9 cut(s)	45, 48, 51, 54, 286, 320, 1054, 1078, 1100
GsaI	CCCAGC	1 cut(s)	929
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	4 cut(s)	681, 1065, 1094, 1103
HgaI	GACGC	2 cut(s)	221, 492
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	6 cut(s)	204, 441, 640, 699, 888, 948
HincII	GTYRAC	2 cut(s)	872, 958
HindII	GTYRAC	2 cut(s)	872, 958
HinfI	GANTC	7 cut(s)	236, 404, 418, 591, 605, 673, 868
HpaI	GTTAAC	1 cut(s)	958
HpaII	CCGG	4 cut(s)	681, 1065, 1094, 1103
HphI	GGTGA	3 cut(s)	413, 472, 905
Hpy166II	GTNNAC	5 cut(s)	208, 335, 672, 872, 958
Hpy188I	TCNGA	4 cut(s)	145, 194, 534, 795
Hpy188III	TCNNGA	3 cut(s)	260, 595, 998
Hpy8I	GTNNAC	5 cut(s)	208, 335, 672, 872, 958
Hpy99I	CGWCG	2 cut(s)	215, 508
HpyAV	CCTTC	4 cut(s)	259, 574, 816, 1050
HpyCH4III	ACNGT	2 cut(s)	245, 743
HpyCH4IV	ACGT	4 cut(s)	554, 642, 659, 705
HpyCH4V	TGCA	5 cut(s)	47, 170, 183, 888, 1077
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 53, 1074
HpyF3I	CTNAG	3 cut(s)	142, 410, 910
HpySE526I	ACGT	4 cut(s)	554, 642, 659, 705
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	6 cut(s)	204, 441, 640, 699, 888, 948
KpnI	GGTACC	1 cut(s)	461
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	2 cut(s)	256, 790
Lsp1109I	GCAGC	7 cut(s)	31, 37, 40, 59, 331, 1086, 1089
LweI	GCATC	1 cut(s)	843
MabI	ACCWGGT	1 cut(s)	558
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	4 cut(s)	554, 642, 659, 705
MaeIII	GTNAC	5 cut(s)	29, 363, 508, 620, 1014
MalI	GATC	2 cut(s)	258, 792
MboI	GATC	2 cut(s)	256, 790
MboII	GAAGA	9 cut(s)	394, 397, 600, 643, 696, 814, 817, 986, 1082
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	1135
MluCI	AATT	2 cut(s)	109, 463
MlyI	GAGTC	4 cut(s)	599, 600, 667, 877
MmeI	TCCRAC	2 cut(s)	264, 565
MnlI	CCTC	9 cut(s)	11, 94, 139, 167, 188, 237, 314, 369, 847
MseI	TTAA	4 cut(s)	348, 488, 801, 957
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	4 cut(s)	681, 1065, 1094, 1103
MspR9I	CCNGG	7 cut(s)	343, 518, 560, 628, 647, 830, 1095
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	6 cut(s)	343, 518, 560, 628, 647, 830
MwoI	GCNNNNNNNGC	3 cut(s)	50, 53, 1074
NciI	CCSGG	1 cut(s)	1095
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	2 cut(s)	256, 790
NlaIII	CATG	6 cut(s)	204, 441, 640, 699, 888, 948
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	2 cut(s)	508, 1014
NspI	RCATGY	1 cut(s)	441
PciI	ACATGT	1 cut(s)	437
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	3 cut(s)	236, 404, 418
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	9 cut(s)	46, 49, 52, 55, 287, 321, 1055, 1079, 1101
Ple19I	CGATCG	1 cut(s)	793
PleI	GAGTC	4 cut(s)	599, 599, 667, 876
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	4 cut(s)	599, 599, 667, 876
Ppu21I	YACGTR	2 cut(s)	660, 706
PscI	ACATGT	1 cut(s)	437
Psp6I	CCWGG	6 cut(s)	341, 516, 558, 626, 645, 828
PspCI	CACGTG	1 cut(s)	660
PspEI	GGTNACC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	925
PspGI	CCWGG	6 cut(s)	341, 516, 558, 626, 645, 828
PspN4I	GGNNCC	1 cut(s)	459
PstI	CTGCAG	2 cut(s)	49, 1079
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	256
PvuI	CGATCG	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	5 cut(s)	459, 473, 557, 708, 728
RsaNI	GTAC	5 cut(s)	458, 472, 556, 707, 727
SaqAI	TTAA	4 cut(s)	348, 488, 801, 957
SatI	GCNGC	9 cut(s)	45, 48, 51, 54, 286, 320, 1054, 1078, 1100
Sau3AI	GATC	2 cut(s)	256, 790
SchI	GAGTC	4 cut(s)	599, 600, 667, 877
ScrFI	CCNGG	7 cut(s)	343, 518, 560, 628, 647, 830, 1095
SduI	GDGCHC	1 cut(s)	1135
SexAI	ACCWGGT	1 cut(s)	558
SfaNI	GCATC	1 cut(s)	843
SfcI	CTRYAG	2 cut(s)	45, 1075
SnaBI	TACGTA	1 cut(s)	706
Sse9I	AATT	2 cut(s)	109, 463
SsiI	CCGC	3 cut(s)	286, 618, 1053
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	7 cut(s)	341, 516, 558, 626, 645, 828, 1093
StyI	CCWWGG	2 cut(s)	695, 816
TaaI	ACNGT	2 cut(s)	245, 743
TaiI	ACGT	4 cut(s)	557, 645, 662, 708
TaqI	TCGA	4 cut(s)	313, 603, 654, 789
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	2 cut(s)	109, 463
TatI	WGTACW	2 cut(s)	471, 726
TauI	GCSGC	2 cut(s)	288, 1056
TfiI	GAWTC	3 cut(s)	236, 404, 418
Tru1I	TTAA	4 cut(s)	348, 488, 801, 957
Tru9I	TTAA	4 cut(s)	348, 488, 801, 957
TscAI	CASTG	3 cut(s)	342, 414, 428
TseFI	GTSAC	2 cut(s)	508, 1014
TseI	GCWGC	7 cut(s)	44, 47, 50, 53, 319, 1077, 1099
Tsp45I	GTSAC	2 cut(s)	508, 1014
TspDTI	ATGAA	5 cut(s)	189, 241, 437, 752, 836
TspRI	CASTG	3 cut(s)	342, 414, 428
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	441
XspI	CTAG	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.