Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

21898324 .. 21899431

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGACATGCTGATCTTCGACACGTGGCACTGGTGGACGCACACCGGAAGAACACAGCCATGGGACTACCTGGAAGAAAGGGGTAAATTGTACAACGATATGAACCGTCTGGTCGCATTTTACAAAGGAATGACAACTTGGGGCAGATGGGTCGACCAAAATGTCGATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATTTCTCCTACCCATTACGAGGGCAAGGAGTGGAATCAGCCAACAAGATCATGCGCAAGTGAAACGCAACCATTCTTTGAGAAAAAGTATCCAACAGGAGTACCTTTGTCTTGGGTTGTAGTCAACAAAGTGCTGGCTAGGATTAAGAAGCCAGTCTATCTTCTCGACATCACGCTTCTCTCACAAATCCGCAAAGATGCACACCCATCCAAGTACAGCGGCCACCACGGCGGCACGGACTGCAGCCACTGGTGCCTTCCCGGTCTGCCGGATACTTGGAATCAGCTCCTCTATGCTGCTCTATTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

170

Amino Acids

19.8

Weight (kDa)

8.72

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	388, 417, 429
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	418
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	3 cut(s)	92, 300, 413
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 173, 205
AluBI	AGCT	1 cut(s)	484
AluI	AGCT	1 cut(s)	484
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	441, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	459
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BanI	GGYRCC	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	453, 481
BccI	CCATC	2 cut(s)	141, 412
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	71
BciVI	GTATCC	2 cut(s)	297, 463
BcnI	CCSGG	1 cut(s)	459
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	439
BfuI	GTATCC	2 cut(s)	297, 463
BglI	GCCNNNNNGGC	1 cut(s)	426
BisI	GCNGC	4 cut(s)	418, 430, 442, 495
BlsI	GCNGC	4 cut(s)	419, 431, 443, 496
Bme1390I	CCNGG	2 cut(s)	71, 459
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	71, 459
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	24
BsaJI	CCNNGG	4 cut(s)	59, 180, 193, 424
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	35, 350, 452
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	59, 180, 193, 424
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	3 cut(s)	35, 350, 452
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	453, 481
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	45, 459, 467
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	12, 166, 245
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	3 cut(s)	388, 417, 429
BspANI	GGCC	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	35, 350, 452
BssECI	CCNNGG	4 cut(s)	59, 180, 193, 424
BssMI	GATC	3 cut(s)	12, 166, 245
BssT1I	CCWWGG	3 cut(s)	59, 180, 193
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	333
BstDSI	CCRYGG	2 cut(s)	59, 424
BstF5I	GGATG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	15, 169, 248
BstMBI	GATC	3 cut(s)	12, 166, 245
BstMWI	GCNNNNNNNGC	4 cut(s)	426, 438, 450, 503
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	69, 457
BstSFI	CTRYAG	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	453, 481
BstV2I	GAAGAC	1 cut(s)	178
BsuI	GTATCC	2 cut(s)	297, 463
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	2 cut(s)	59, 424
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	28, 445
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	447
CfoI	GCGC	1 cut(s)	254
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	91, 299, 412
CviAII	CATG	3 cut(s)	7, 60, 249
CviJI	RGCY	7 cut(s)	58, 238, 335, 349, 420, 444, 484
CviKI_1	RGCY	7 cut(s)	58, 238, 335, 349, 420, 444, 484
CviQI	GTAC	3 cut(s)	91, 299, 412
DpnI	GATC	3 cut(s)	14, 168, 247
DpnII	GATC	3 cut(s)	12, 166, 245
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	59, 180, 193
Eco72I	CACGTG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	3 cut(s)	59, 180, 193
ErhI	CCWWGG	3 cut(s)	59, 180, 193
FaeI	CATG	3 cut(s)	10, 63, 252
FaiI	YATR	5 cut(s)	8, 61, 101, 250, 492
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	6, 59, 248
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	418, 430, 442, 495
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	4 cut(s)	418, 430, 442, 495
FspBI	CTAG	1 cut(s)	336
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	4 cut(s)	418, 430, 442, 495
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	3 cut(s)	45, 459, 467
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	10, 63, 252
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	2 cut(s)	154, 322
HindII	GTYRAC	2 cut(s)	154, 322
HinfI	GANTC	2 cut(s)	232, 478
HpaII	CCGG	3 cut(s)	45, 459, 467
Hpy166II	GTNNAC	3 cut(s)	36, 154, 322
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	3 cut(s)	36, 154, 322
HpyAV	CCTTC	2 cut(s)	180, 464
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	398, 441
HpyF10VI	GCNNNNNNNGC	4 cut(s)	426, 438, 450, 503
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	10, 63, 252
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	12, 166, 245
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	2 cut(s)	453, 481
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	23
MalI	GATC	3 cut(s)	14, 168, 247
MboI	GATC	3 cut(s)	12, 166, 245
MboII	GAAGA	6 cut(s)	7, 60, 86, 178, 181, 350
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	211, 497
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	3 cut(s)	45, 459, 467
MspR9I	CCNGG	2 cut(s)	71, 459
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	4 cut(s)	426, 438, 450, 503
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	12, 166, 245
NlaIII	CATG	3 cut(s)	10, 63, 252
NlaIV	GGNNCC	1 cut(s)	452
NsbI	TGCGCA	1 cut(s)	253
NspI	RCATGY	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	232, 478
PkrI	GCNGC	4 cut(s)	419, 431, 443, 496
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	69
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	447
RsaI	GTAC	3 cut(s)	92, 300, 413
RsaNI	GTAC	3 cut(s)	91, 299, 412
RseI	CAYNNNNRTG	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	418, 430, 442, 495
Sau3AI	GATC	3 cut(s)	12, 166, 245
ScrFI	CCNGG	2 cut(s)	71, 459
SetI	ASST	5 cut(s)	26, 72, 186, 304, 486
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	388, 417, 429
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	69, 457
StyI	CCWWGG	3 cut(s)	59, 180, 193
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	18, 153, 165, 363
TasI	AATT	1 cut(s)	86
TatI	WGTACW	2 cut(s)	90, 411
TauI	GCSGC	2 cut(s)	420, 432
TfiI	GAWTC	2 cut(s)	232, 478
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	35, 452
TseI	GCWGC	2 cut(s)	441, 494
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	35, 452
XceI	RCATGY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.