Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Reverse (-)

35231159 .. 35231575

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1270900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGACGTCCTGATCTTCAACTCTTGGCATTGGTGGACCCACACCGGCAAGTCTCAGCCATTTGATTATTTTTGTGATAGGACAAAACTGTACAAAGACATGGATCATTTGACAGCATATTACAAGGGGCTTTCCACATGGGCTAGATGGGTTGATTCAAATGTTGATACTTCAAGAACCAAAGTCTTCTTCCAGGGCATTTCTCCAACACATTATCAGGGAAAAGAATGGAATTCGCCAAAGAAGACTTGCTCAGGAGAACTTGGACCGTTGTCGGGATCAACCTACCCAGCAGGGGCATCTCCATCTGCTGCTGTTGTCTACAAGGTGCTAAGCACGGTTAAAGAACCCGGTTTACTTGCTCGACATTACAACGCTCTCGCAGTTGAGAAAGGATGCTCATCCCTCAACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

139

Amino Acids

15.53

Weight (kDa)

8.96

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 111	3.2e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	321
AclWI	GGATC	2 cut(s)	111, 286
AcsI	RAATTY	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	275, 295
AgsI	TTSAA	3 cut(s)	19, 159, 174
AjnI	CCWGG	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	111, 286
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	36, 266
AsuC2I	CCSGG	1 cut(s)	351
AvaII	GGWCC	2 cut(s)	36, 266
BbsI	GAAGAC	2 cut(s)	178, 251
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	141, 313
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	194, 351
Bme18I	GGWCC	2 cut(s)	36, 266
BmgT120I	GGNCC	2 cut(s)	36, 266
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	194, 351
BmsI	GCATC	2 cut(s)	308, 386
BoxI	GACNNNNGTC	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	178, 251
Bpu10I	CCTNAGC	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 295
Bse118I	RCCGGY	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	401, 401
BseJI	GATNNNNATC	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	275, 295
BseMII	CTCAG	2 cut(s)	68, 267
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	45, 351
BslI	CCNNNNNNNGG	2 cut(s)	275, 295
BsmAI	GTCTC	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	12, 103, 278
Bsp1720I	GCTNAGC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	67, 266
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	111, 286
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	12, 103, 278
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	90, 270, 340
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	54, 253, 332
BstF5I	GGATG	2 cut(s)	401, 401
BstKTI	GATC	3 cut(s)	15, 106, 281
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	12, 103, 278
BstNI	CCWGG	1 cut(s)	194
BstPAI	GACNNNNGTC	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	192, 349
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	178, 251
BtsCI	GGATG	2 cut(s)	401, 401
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	36, 266
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	100, 138
CviJI	RGCY	3 cut(s)	58, 130, 143
CviKI_1	RGCY	3 cut(s)	58, 130, 143
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	54, 253, 332
DpnI	GATC	3 cut(s)	14, 105, 280
DpnII	GATC	3 cut(s)	12, 103, 278
Eco47I	GGWCC	2 cut(s)	36, 266
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	103, 141
FaiI	YATR	4 cut(s)	101, 118, 139, 415
FatI	CATG	2 cut(s)	99, 137
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	388, 408
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	1 cut(s)	293
HapII	CCGG	2 cut(s)	45, 351
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	103, 141
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	45, 351
Hpy166II	GTNNAC	3 cut(s)	36, 322, 356
Hpy188III	TCNNGA	4 cut(s)	10, 174, 255, 276
Hpy8I	GTNNAC	3 cut(s)	36, 322, 356
HpyCH4III	ACNGT	3 cut(s)	90, 270, 340
HpyCH4IV	ACGT	1 cut(s)	6
HpyF3I	CTNAG	3 cut(s)	54, 253, 332
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	103, 141
Kzo9I	GATC	3 cut(s)	12, 103, 278
LpnPI	CCDG	9 cut(s)	23, 58, 179, 203, 206, 240, 279, 303, 364
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	308, 386
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	6
MalI	GATC	3 cut(s)	14, 105, 280
MboI	GATC	3 cut(s)	12, 103, 278
MboII	GAAGA	4 cut(s)	7, 178, 181, 256
MluCI	AATT	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	342
MspI	CCGG	2 cut(s)	45, 351
MspR9I	CCNGG	2 cut(s)	194, 351
MvaI	CCWGG	1 cut(s)	194
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	12, 103, 278
NlaIII	CATG	2 cut(s)	103, 141
NlaIV	GGNNCC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	36, 266
PsrI	GAACNNNNNNTAC	2 cut(s)	339, 371
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	12, 103, 278
Sau96I	GGNCC	2 cut(s)	36, 266
ScrFI	CCNGG	2 cut(s)	194, 351
SetI	ASST	3 cut(s)	9, 287, 330
SfaNI	GCATC	2 cut(s)	308, 386
SinI	GGWCC	2 cut(s)	36, 266
Sse9I	AATT	1 cut(s)	232
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	192, 349
TaaI	ACNGT	3 cut(s)	90, 270, 340
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	364
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	36, 266
XapI	RAATTY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	144
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.