MD09G1240100.v1.1

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
30522037 .. 30526582
4546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1240100.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGGTTTCCTGTTCAGAGCTCTGTTTTTTACTCTGTTTTTAGTTTCCCACCAAACAAAAGCACAGGTATTCAATTCCTCCTACAATAATGCTCTTCCGTCTGCTTCTGCTACCAGTACTAGCAGCTCAGTGGCCAGAAAGCTCGCAGGAAAATGCAACTGGTTCCGCGGTACATGGGTCTACGATGCTTCTTCTAAACCCCCCTACTACTCTTCCACCTGTCCCTTCGTAGATCCGCAGTTCGACTGCTTAAAGTACGGCCGTCCCGACACCGCTTTCCTCAAATACCGATGGCAACCCTTCTCCTGCGCCCTTCCCAGGTTCAATGGGTTGTATTTCTTGGAGAAATGGAGGGGGAAGAAGATCATGTTCGTGGGAGACTCACTGAGTTTCAATCAGTGGGTGTCATTAACATGTATGCTTCATGCATGGGTGCCAAATTCTAGGACTTCATATGTTAAGAAAGATGGTTTAGCTTCAGTCACATTCCAGGACTATGGAGTACAAATACTGCTGTATCGCACACCATACTTGGTAGATCTTGTCAACGAGAAGGTTGGACGAGTGTTGAAGCTTGACTCAATTACGGATGGCAACGCATGGAGAGGCATGGACATGTTGATCTTCGACACGTGGCACTGGTGGACTCACACTGGAAGAGCACAGCCATGGGACTATCTTGAAGAAAGGGGTAAATTGTACAAAGATATGAACCGTCTGATCGCATTTTACAAAGGAATGACAACTTGGGCCAGATGGGTCGACCGAAATGTCGATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATTTCTCCTACCCATTACCTGGGAAGGGATTGGAATCAGCCAACAAGATCATGCGCAAGTGAAGTACAACCATACTTTGGGAGGAAGTATCCAGCAGGAGTACCTTTGTCTTGGGTTGTAGTCAACAAAGTGTTGGCTAGGATTAAGAAACCAGTCTATCTTCTCGACATCACATTTCTCTCCCAAATCCGCAAAGATGCACACCCATCCAAGTACAGCAGCGAGCACGGCACGGACTGCAGCCACTGGTGCCTTCCCGGCCTGCCGGATACTTGGAACCAGCTCCTCTATGCTGCTCTATTTGCTTGA

Protein Analysis

372

Amino Acids

42.95

Weight (kDa)

9.51

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 51 - 103 4.8e-21 PMR5 N terminal Domain
PC-Esterase PF13839 105 - 367 1.5e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 770
Acc16I TGCGCA 1 cut(s) 862
AccB1I GGYRCC 2 cut(s) 433, 1056
AccB7I CCANNNNNTGG 2 cut(s) 826, 884
AccI GTMKAC 2 cut(s) 180, 762
AccII CGCG 1 cut(s) 168
AciI CCGC 5 cut(s) 166, 168, 236, 273, 997
AclWI GGATC 2 cut(s) 227, 770
AcoI YGGCCR 2 cut(s) 132, 259
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 462
AcvI CACGTG 1 cut(s) 633
AfaI GTAC 8 cut(s) 118, 172, 257, 504, 701, 873, 909, 1022
AfiI CCNNNNNNNGG 4 cut(s) 318, 826, 832, 884
AflIII ACRYGT 3 cut(s) 413, 615, 630
AgsI TTSAA 5 cut(s) 73, 325, 394, 571, 683
AjnI CCWGG 3 cut(s) 317, 489, 825
AjuI GAANNNNNNNTTGG 4 cut(s) 730, 762, 782, 814
AluBI AGCT 6 cut(s) 20, 126, 142, 476, 574, 1090
AluI AGCT 6 cut(s) 20, 126, 142, 476, 574, 1090
Alw21I GWGCWC 3 cut(s) 22, 664, 1035
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 2 cut(s) 227, 770
AlwNI CAGNNNCTG 1 cut(s) 1053
AoxI GGCC 4 cut(s) 132, 259, 750, 1066
ApeKI GCWGC 4 cut(s) 123, 1026, 1047, 1100
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 777, 809
AspLEI GCGC 2 cut(s) 311, 863
AspS9I GGNCC 1 cut(s) 750
AsuC2I CCSGG 1 cut(s) 1065
BaeI ACNNNNGTAYC 4 cut(s) 162, 195, 500, 533
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 2 cut(s) 433, 1056
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 787
Bbv12I GWGCWC 3 cut(s) 22, 664, 1035
BbvI GCAGC 4 cut(s) 135, 1038, 1059, 1087
BccI CCATC 5 cut(s) 285, 461, 584, 750, 1021
BceAI ACGGC 3 cut(s) 246, 274, 1051
BciT130I CCWGG 3 cut(s) 319, 491, 827
BciVI GTATCC 2 cut(s) 906, 1069
BcnI CCSGG 1 cut(s) 1065
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 3 cut(s) 120, 444, 945
BfmI CTRYAG 1 cut(s) 1045
BfuI GTATCC 2 cut(s) 906, 1069
BglI GCCNNNNNGGC 1 cut(s) 1065
BglII AGATCT 1 cut(s) 538
BisI GCNGC 4 cut(s) 124, 1027, 1048, 1101
BlsI GCNGC 4 cut(s) 125, 1028, 1049, 1102
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 4 cut(s) 319, 491, 827, 1065
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 4 cut(s) 164, 435, 1058, 1085
BmrFI CCNGG 4 cut(s) 319, 491, 827, 1065
BmsI GCATC 2 cut(s) 175, 994
BpiI GAAGAC 1 cut(s) 787
BpuMI CCSGG 1 cut(s) 1065
BsaAI YACGTR 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 6 cut(s) 166, 317, 668, 789, 802, 826
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 826, 832, 884
Bse1I ACTGG 6 cut(s) 114, 164, 644, 658, 959, 1058
Bse8I GATNNNNATC 1 cut(s) 840
BseBI CCWGG 3 cut(s) 319, 491, 827
BseDI CCNNGG 6 cut(s) 166, 317, 668, 789, 802, 826
BseGI GGATG 2 cut(s) 595, 1013
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 4 cut(s) 318, 826, 832, 884
BseMII CTCAG 2 cut(s) 141, 377
BseNI ACTGG 6 cut(s) 114, 164, 644, 658, 959, 1058
BseRI GAGGAG 1 cut(s) 1082
BseX3I CGGCCG 1 cut(s) 259
BseXI GCAGC 4 cut(s) 135, 1038, 1059, 1087
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 2 cut(s) 262, 766
BshFI GGCC 4 cut(s) 134, 261, 752, 1068
BshNI GGYRCC 2 cut(s) 433, 1056
BsiEI CGRYCG 2 cut(s) 262, 766
BsiHKAI GWGCWC 3 cut(s) 22, 664, 1035
BsiSI CCGG 2 cut(s) 1065, 1073
BslFI GGGAC 3 cut(s) 207, 249, 686
BslI CCNNNNNNNGG 4 cut(s) 318, 826, 832, 884
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 3 cut(s) 207, 249, 686
BsnI GGCC 4 cut(s) 134, 261, 752, 1068
Bsp1286I GDGCHC 3 cut(s) 22, 664, 1035
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
Bsp19I CCATGG 1 cut(s) 668
BspACI CCGC 5 cut(s) 166, 168, 236, 273, 997
BspANI GGCC 4 cut(s) 134, 261, 752, 1068
BspCNI CTCAG 2 cut(s) 140, 378
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 164, 435, 1058, 1085
BspMAI CTGCAG 1 cut(s) 1049
BspPI GGATC 2 cut(s) 227, 770
BspQI GCTCTTC 2 cut(s) 99, 652
BspT107I GGYRCC 2 cut(s) 433, 1056
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 6 cut(s) 114, 164, 644, 658, 959, 1058
BssECI CCNNGG 6 cut(s) 166, 317, 668, 789, 802, 826
BssMI GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
BssT1I CCWWGG 3 cut(s) 668, 789, 802
Bst2UI CCWGG 3 cut(s) 319, 491, 827
Bst4CI ACNGT 1 cut(s) 716
Bst6I CTCTTC 3 cut(s) 99, 217, 652
BstAPI GCANNNNNTGC 1 cut(s) 1044
BstAUI TGTACA 1 cut(s) 699
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 3 cut(s) 144, 1031, 1070
BstDEI CTNAG 2 cut(s) 127, 386
BstDSI CCRYGG 2 cut(s) 166, 668
BstF5I GGATG 2 cut(s) 595, 1013
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 311, 863
BstKTI GATC 7 cut(s) 235, 366, 541, 624, 723, 778, 857
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
BstMCI CGRYCG 2 cut(s) 262, 766
BstMWI GCNNNNNNNGC 5 cut(s) 1035, 1044, 1056, 1065, 1109
BstNI CCWGG 3 cut(s) 319, 491, 827
BstNSI RCATGY 2 cut(s) 417, 619
BstSCI CCNGG 4 cut(s) 317, 489, 825, 1063
BstSFI CTRYAG 1 cut(s) 1045
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 135, 1038, 1059, 1087
BstV2I GAAGAC 1 cut(s) 787
BstX2I RGATCY 2 cut(s) 232, 538
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 2 cut(s) 232, 538
BstZI CGGCCG 1 cut(s) 259
BsuI GTATCC 2 cut(s) 906, 1069
BsuRI GGCC 4 cut(s) 134, 261, 752, 1068
BtgI CCRYGG 2 cut(s) 166, 668
BtsCI GGATG 2 cut(s) 595, 1013
BtsIMutI CAGTG 6 cut(s) 135, 383, 404, 637, 651, 1051
Cac8I GCNNGC 3 cut(s) 144, 1031, 1070
CaiI CAGNNNCTG 1 cut(s) 1053
CfoI GCGC 2 cut(s) 311, 863
Cfr13I GGNCC 1 cut(s) 750
Cfr42I CCGCGG 1 cut(s) 169
Csp6I GTAC 8 cut(s) 117, 171, 256, 503, 700, 872, 908, 1021
CviQI GTAC 8 cut(s) 117, 171, 256, 503, 700, 872, 908, 1021
DdeI CTNAG 2 cut(s) 127, 386
DpnI GATC 7 cut(s) 234, 365, 540, 623, 722, 777, 856
DpnII GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 2 cut(s) 132, 259
EagI CGGCCG 1 cut(s) 259
Eam1104I CTCTTC 3 cut(s) 99, 217, 652
EarI CTCTTC 3 cut(s) 99, 217, 652
Ecl136II GAGCTC 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 668, 789, 802
Eco24I GRGCYC 1 cut(s) 22
Eco52I CGGCCG 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 462
Eco72I CACGTG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 317, 489, 825
EcoT14I CCWWGG 3 cut(s) 668, 789, 802
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 3 cut(s) 668, 789, 802
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 3 cut(s) 207, 249, 686
FauNDI CATATG 1 cut(s) 454
FblI GTMKAC 2 cut(s) 180, 762
Fnu4HI GCNGC 4 cut(s) 124, 1027, 1048, 1101
FokI GGATG 2 cut(s) 602, 1000
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 124, 1027, 1048, 1101
FspBI CTAG 3 cut(s) 120, 444, 945
FspI TGCGCA 1 cut(s) 862
GlaI GCGC 2 cut(s) 310, 862
GluI GCNGC 4 cut(s) 124, 1027, 1048, 1101
HaeIII GGCC 4 cut(s) 134, 261, 752, 1068
HapII CCGG 2 cut(s) 1065, 1073
HhaI GCGC 2 cut(s) 311, 863
Hin6I GCGC 2 cut(s) 309, 861
HinP1I GCGC 2 cut(s) 309, 861
HincII GTYRAC 3 cut(s) 547, 763, 931
HindII GTYRAC 3 cut(s) 547, 763, 931
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 4 cut(s) 380, 578, 646, 841
HpaII CCGG 2 cut(s) 1065, 1073
Hpy166II GTNNAC 5 cut(s) 181, 547, 645, 763, 931
Hpy188I TCNGA 2 cut(s) 17, 720
Hpy188III TCNNGA 3 cut(s) 266, 680, 971
Hpy8I GTNNAC 5 cut(s) 181, 547, 645, 763, 931
HpyAV CCTTC 7 cut(s) 235, 310, 323, 547, 789, 825, 1070
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 4 cut(s) 156, 428, 1007, 1047
HpyF10VI GCNNNNNNNGC 5 cut(s) 1035, 1044, 1056, 1065, 1109
HpyF3I CTNAG 2 cut(s) 127, 386
HpySE526I ACGT 1 cut(s) 632
HspAI GCGC 2 cut(s) 309, 861
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
LguI GCTCTTC 2 cut(s) 99, 652
LmnI GCTCC 1 cut(s) 1095
Lsp1109I GCAGC 4 cut(s) 135, 1038, 1059, 1087
LweI GCATC 2 cut(s) 175, 994
MaeI CTAG 3 cut(s) 120, 444, 945
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 1 cut(s) 481
MalI GATC 7 cut(s) 234, 365, 540, 623, 722, 777, 856
MboI GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
MflI RGATCY 2 cut(s) 232, 538
MhlI GDGCHC 3 cut(s) 22, 664, 1035
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 73, 439, 582, 695
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 3 cut(s) 374, 572, 640
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 6 cut(s) 88, 290, 345, 599, 882, 1103
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 430
MscI TGGCCA 1 cut(s) 134
MseI TTAA 4 cut(s) 251, 410, 459, 951
MslI CAYNNNNRTG 4 cut(s) 371, 412, 614, 667
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 2 cut(s) 1065, 1073
MspR9I CCNGG 4 cut(s) 319, 491, 827, 1065
MvaI CCWGG 3 cut(s) 319, 491, 827
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 1035, 1044, 1056, 1065, 1109
NciI CCSGG 1 cut(s) 1065
NcoI CCATGG 1 cut(s) 668
NdeI CATATG 1 cut(s) 454
NdeII GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
NlaIV GGNNCC 4 cut(s) 164, 435, 1058, 1085
NmuCI GTSAC 1 cut(s) 481
NsbI TGCGCA 1 cut(s) 862
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 2 cut(s) 417, 619
PciI ACATGT 2 cut(s) 413, 615
PciSI GCTCTTC 2 cut(s) 99, 652
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 1 cut(s) 841
PflMI CCANNNNNTGG 2 cut(s) 826, 884
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 4 cut(s) 125, 1028, 1049, 1102
PleI GAGTC 3 cut(s) 374, 572, 640
PmaCI CACGTG 1 cut(s) 633
PmlI CACGTG 1 cut(s) 633
PpsI GAGTC 3 cut(s) 374, 572, 640
Ppu21I YACGTR 1 cut(s) 633
PscI ACATGT 2 cut(s) 413, 615
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 3 cut(s) 317, 489, 825
PspCI CACGTG 1 cut(s) 633
PspGI CCWGG 3 cut(s) 317, 489, 825
PspN4I GGNNCC 4 cut(s) 164, 435, 1058, 1085
PspPI GGNCC 1 cut(s) 750
PstI CTGCAG 1 cut(s) 1049
PstNI CAGNNNCTG 1 cut(s) 1053
PsuI RGATCY 2 cut(s) 232, 538
RsaI GTAC 8 cut(s) 118, 172, 257, 504, 701, 873, 909, 1022
RsaNI GTAC 8 cut(s) 117, 171, 256, 503, 700, 872, 908, 1021
RseI CAYNNNNRTG 4 cut(s) 371, 412, 614, 667
SacI GAGCTC 1 cut(s) 22
SacII CCGCGG 1 cut(s) 169
SalI GTCGAC 1 cut(s) 761
SapI GCTCTTC 2 cut(s) 99, 652
SaqAI TTAA 4 cut(s) 251, 410, 459, 951
SatI GCNGC 4 cut(s) 124, 1027, 1048, 1101
Sau3AI GATC 7 cut(s) 232, 363, 538, 621, 720, 775, 854
Sau96I GGNCC 1 cut(s) 750
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 3 cut(s) 374, 572, 640
ScrFI CCNGG 4 cut(s) 319, 491, 827, 1065
SduI GDGCHC 3 cut(s) 22, 664, 1035
SfaNI GCATC 2 cut(s) 175, 994
SfcI CTRYAG 1 cut(s) 1045
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SmiMI CAYNNNNRTG 4 cut(s) 371, 412, 614, 667
Sse9I AATT 4 cut(s) 73, 439, 582, 695
SsiI CCGC 5 cut(s) 166, 168, 236, 273, 997
SspMI CTAG 3 cut(s) 120, 444, 945
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 4 cut(s) 317, 489, 825, 1063
StyI CCWWGG 3 cut(s) 668, 789, 802
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 1 cut(s) 635
TaqI TCGA 5 cut(s) 243, 627, 762, 774, 972
TaqII GACCGA 1 cut(s) 780
TasI AATT 4 cut(s) 73, 439, 582, 695
TatI WGTACW 5 cut(s) 116, 502, 699, 871, 1020
TfiI GAWTC 1 cut(s) 841
Tru1I TTAA 4 cut(s) 251, 410, 459, 951
Tru9I TTAA 4 cut(s) 251, 410, 459, 951
TscAI CASTG 6 cut(s) 135, 390, 404, 644, 658, 1058
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 4 cut(s) 123, 1026, 1047, 1100
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 413, 441, 725
TspGWI ACGGA 3 cut(s) 87, 602, 1055
TspRI CASTG 6 cut(s) 135, 390, 404, 644, 658, 1058
Van91I CCANNNNNTGG 2 cut(s) 826, 884
XapI RAATTY 1 cut(s) 439
XceI RCATGY 2 cut(s) 417, 619
XmiI GTMKAC 2 cut(s) 180, 762
XspI CTAG 3 cut(s) 120, 444, 945
ZrmI AGTACT 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.