AT2G42710

Ribosomal protein L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010038
Physical Location & Seq
Forward (+)
17782308 .. 17785090
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42710.1

Sequence Viewer

Length: 1248 bp
ATGGCAGCTATGAAGCTCCTACTCTCTCAAGCTCGCCGCCAAGGTCTAATCAAACCCTTTTCGTCTCCATTTCAACAAATCCCAAGACTCTTCTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCATCCGATTCGAATCCATCTCCCGATTCAAACGAATCTCGCAAAAAGGCTGTTACAATCGAGCCAGTATCGTACGCGGCCAAACCCAAGGATCAGAAATCTGAACCGAAAAATGTTGAATCGACGGAGAACCTTCAGTCTCCAGAATCAGCGAACTGGACTCGTGAAGAAATCCGATATGTGAAAGACTCTCCTTCGATCAATCCGGTTTCTTACGCTCAGCGTGTGGCTCCACTTCCGGAGGATCGTGTCGCCGGTGAGAATGAAGGAGATAGAACTCCAGAGGAGATGGAGAGGGAGAGGAAGAGGATTGAATTAGAGAATCGAGCTAGAAGAAGGTTTTTAAGAGCTAATGCTGTTGAAGAAGATACTTCTTCACTTCCTTTGCCAACTTTGCTTAAACCAGAGTTGAAGCATGGAAAGAAACCTATTTTCGATCTCATGGAGGCCATTAGAGAGATTAAGGGCAATGCCAAGGCGAAATTTGATGAAACTCTTGAGGCGCATGTGAGATTGGGCATTGAAAAAGGAAGATCTGAGCTGATAGTTCGTGGTACTTTGGCTCTACCCCACTCTGTTAAGAAGGATGTGAAAGTGGCTTTCTTTGCCGAGGGAGCTGATGCAGAGGATGCAAAAGCTGCAGGAGCTGATGTCGTTGGTGGTCTTGAGCTTATTGAAGAGATCTTGAAAAGTGGCAAGATTGACTTTGATAGATGTCTTGCAACTCCAAAAATGATGCCCCGTGTTTACAAGATATCAAGAATTCTTAACAATCATGGTTTGATGCCAAACCCCAAACAAGGTAGTGTGACCAAGGATGTTACGAAAGCAGTCAAAGACGCAAAAGCTGGACATACCAAATTTAGAATGGATAAAACGTCTATTCTTCATGTGCCACTTGGAAAGATGAGCTTTTCTGAAGAGGCTTTACGAGAGAATGTTGGTGCGTTTATGAACGCCCTTTTGCTAGCGAAGCCTGCTGGATTGAAAAAGACTTCAAAATATGCTGGTTATGTGAATGCATTCCACTTATGCAGTACGATGGGAAAGGGTTATCCAGTATCGATACAGTCGTTATCCAGAGCAGCGGACCTCCATACCAAATTGCAGCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L1

Protein Analysis

415

Amino Acids

45.78

Weight (kDa)

9.54

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 199 - 392 6.5e-54 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 3 cut(s) 37, 206, 1217
AclWI GGATC 2 cut(s) 228, 381
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 611, 891, 989
AcuI CTGAAG 2 cut(s) 248, 1068
AfaI GTAC 3 cut(s) 203, 685, 1168
AfiI CCNNNNNNNGG 1 cut(s) 929
Alw26I GTCTC 2 cut(s) 69, 273
AlwI GGATC 2 cut(s) 228, 381
AlwNI CAGNNNCTG 1 cut(s) 776
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 2 cut(s) 207, 576
ApeKI GCWGC 4 cut(s) 5, 767, 1214, 1237
ApoI RAATTY 3 cut(s) 611, 891, 989
Asp700I GAANNNNTTC 1 cut(s) 1151
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 1 cut(s) 1219
AsuHPI GGTGA 1 cut(s) 398
AsuII TTCGAA 1 cut(s) 140
AsuNHI GCTAGC 1 cut(s) 1096
AvaII GGWCC 1 cut(s) 1219
BaeI ACNNNNGTAYC 2 cut(s) 1187, 1220
BarI GAAGNNNNNNTAC 2 cut(s) 1041, 1073
BauI CACGAG 1 cut(s) 291
BbvI GCAGC 3 cut(s) 17, 754, 1226
BccI CCATC 3 cut(s) 154, 412, 1165
BcoDI GTCTC 2 cut(s) 69, 273
BfaI CTAG 2 cut(s) 459, 1097
BfmI CTRYAG 1 cut(s) 768
BglII AGATCT 2 cut(s) 662, 810
BisI GCNGC 6 cut(s) 6, 37, 207, 768, 1215, 1238
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 6 cut(s) 7, 38, 208, 769, 1216, 1239
Bme18I GGWCC 1 cut(s) 1219
BmgT120I GGNCC 1 cut(s) 1219
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 4 cut(s) 739, 748, 855, 903
BmtI GCTAGC 1 cut(s) 1100
BpmI CTGGAG 2 cut(s) 255, 393
Bpu1102I GCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 140
BpuEI CTTGAG 4 cut(s) 12, 647, 815, 1226
Bsa29I ATCGAT 1 cut(s) 1193
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 5 cut(s) 40, 216, 603, 738, 942
BsaWI WCCGGW 2 cut(s) 334, 367
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 194, 290, 1187
Bse3DI GCAATG 1 cut(s) 604
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 367
BseCI ATCGAT 1 cut(s) 1193
BseDI CCNNGG 5 cut(s) 40, 216, 603, 738, 942
BseGI GGATG 4 cut(s) 131, 721, 763, 952
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 929
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 2 cut(s) 362, 657
BseNI ACTGG 3 cut(s) 194, 290, 1187
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 3 cut(s) 17, 754, 1226
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 209, 578
BshVI ATCGAT 1 cut(s) 1193
BsiSI CCGG 3 cut(s) 335, 368, 384
BsiWI CGTACG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 2 cut(s) 69, 273
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 2 cut(s) 1151, 1153
BsnI GGCC 2 cut(s) 209, 578
Bsp119I TTCGAA 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 6 cut(s) 220, 327, 373, 565, 662, 810
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 3 cut(s) 37, 206, 1217
BspANI GGCC 2 cut(s) 209, 578
BspCNI CTCAG 2 cut(s) 361, 658
BspDI ATCGAT 1 cut(s) 1193
BspEI TCCGGA 1 cut(s) 367
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 772
BspOI GCTAGC 1 cut(s) 1100
BspPI GGATC 2 cut(s) 228, 381
BspT104I TTCGAA 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 3 cut(s) 194, 290, 1187
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 5 cut(s) 40, 216, 603, 738, 942
BssMI GATC 6 cut(s) 220, 327, 373, 565, 662, 810
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 4 cut(s) 40, 216, 603, 942
Bst2BI CACGAG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 1200
Bst6I CTCTTC 5 cut(s) 95, 100, 428, 801, 1044
BstAPI GCANNNNNTGC 2 cut(s) 758, 767
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 34, 1098, 1107
BstDEI CTNAG 2 cut(s) 348, 666
BstF5I GGATG 4 cut(s) 131, 721, 763, 952
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 6 cut(s) 223, 330, 376, 568, 665, 813
BstMAI GTCTC 2 cut(s) 69, 273
BstMBI GATC 6 cut(s) 220, 327, 373, 565, 662, 810
BstMWI GCNNNNNNNGC 8 cut(s) 523, 734, 743, 758, 767, 773, 1102, 1106
BstNSI RCATGY 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 17, 754, 1226
BstX2I RGATCY 2 cut(s) 662, 810
BstYI RGATCY 2 cut(s) 662, 810
Bsu15I ATCGAT 1 cut(s) 1193
BsuRI GGCC 2 cut(s) 209, 578
BsuTUI ATCGAT 1 cut(s) 1193
BtsCI GGATG 4 cut(s) 131, 721, 763, 952
Cac8I GCNNGC 3 cut(s) 34, 1098, 1107
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 1219
ClaI ATCGAT 1 cut(s) 1193
CseI GACGC 1 cut(s) 977
Csp6I GTAC 3 cut(s) 202, 684, 1167
CviAII CATG 5 cut(s) 545, 571, 635, 905, 1019
CviQI GTAC 3 cut(s) 202, 684, 1167
DdeI CTNAG 2 cut(s) 348, 666
DpnI GATC 6 cut(s) 222, 329, 375, 567, 664, 812
DpnII GATC 6 cut(s) 220, 327, 373, 565, 662, 810
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 5 cut(s) 95, 100, 428, 801, 1044
EarI CTCTTC 5 cut(s) 95, 100, 428, 801, 1044
Eco130I CCWWGG 4 cut(s) 40, 216, 603, 942
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 1219
Eco57I CTGAAG 2 cut(s) 248, 1068
EcoRI GAATTC 1 cut(s) 891
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 4 cut(s) 40, 216, 603, 942
EcoT22I ATGCAT 1 cut(s) 1153
ErhI CCWWGG 4 cut(s) 40, 216, 603, 942
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 5 cut(s) 548, 574, 638, 908, 1022
FalI AAGNNNNNCTT 4 cut(s) 818, 850, 1025, 1057
FatI CATG 5 cut(s) 544, 570, 634, 904, 1018
Fnu4HI GCNGC 6 cut(s) 6, 37, 207, 768, 1215, 1238
FokI GGATG 4 cut(s) 118, 728, 770, 959
Fsp4HI GCNGC 6 cut(s) 6, 37, 207, 768, 1215, 1238
FspBI CTAG 2 cut(s) 459, 1097
GlaI GCGC 1 cut(s) 633
GluI GCNGC 6 cut(s) 6, 37, 207, 768, 1215, 1238
GsuI CTGGAG 2 cut(s) 255, 393
HaeIII GGCC 2 cut(s) 209, 578
HapII CCGG 3 cut(s) 335, 368, 384
HgaI GACGC 1 cut(s) 977
HhaI GCGC 1 cut(s) 634
Hin1II CATG 5 cut(s) 548, 574, 638, 908, 1022
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HpaII CCGG 3 cut(s) 335, 368, 384
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 6 cut(s) 136, 225, 232, 305, 667, 1048
Hpy8I GTNNAC 1 cut(s) 877
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 5 cut(s) 272, 333, 389, 459, 706
HpyCH4III ACNGT 1 cut(s) 1200
HpyCH4IV ACGT 1 cut(s) 1007
HpyCH4V TGCA 7 cut(s) 752, 761, 770, 851, 1151, 1164, 1237
HpyF10VI GCNNNNNNNGC 8 cut(s) 523, 734, 743, 758, 767, 773, 1102, 1106
HpyF3I CTNAG 2 cut(s) 348, 666
HpySE526I ACGT 1 cut(s) 1007
Hsp92II CATG 5 cut(s) 548, 574, 638, 908, 1022
HspAI GCGC 1 cut(s) 632
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 6 cut(s) 220, 327, 373, 565, 662, 810
LmnI GCTCC 4 cut(s) 21, 364, 743, 773
Lsp1109I GCAGC 3 cut(s) 17, 754, 1226
LweI GCATC 4 cut(s) 739, 748, 855, 903
MaeI CTAG 2 cut(s) 459, 1097
MaeII ACGT 1 cut(s) 1007
MaeIII GTNAC 3 cut(s) 181, 937, 949
MalI GATC 6 cut(s) 222, 329, 375, 567, 664, 812
MboI GATC 6 cut(s) 220, 327, 373, 565, 662, 810
MflI RGATCY 2 cut(s) 662, 810
MluCI AATT 5 cut(s) 443, 611, 891, 989, 1232
MlyI GAGTC 3 cut(s) 81, 283, 311
Mph1103I ATGCAT 1 cut(s) 1153
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 1151
MseI TTAA 5 cut(s) 473, 528, 591, 708, 897
MspA1I CMGCKG 1 cut(s) 1217
MspI CCGG 3 cut(s) 335, 368, 384
Mva1269I GAATGC 2 cut(s) 1151, 1153
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 8 cut(s) 523, 734, 743, 758, 767, 773, 1102, 1106
NdeII GATC 6 cut(s) 220, 327, 373, 565, 662, 810
NheI GCTAGC 1 cut(s) 1096
NlaIII CATG 5 cut(s) 548, 574, 638, 908, 1022
NlaIV GGNNCC 1 cut(s) 360
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 1 cut(s) 937
NsiI ATGCAT 1 cut(s) 1153
NspI RCATGY 1 cut(s) 638
NspV TTCGAA 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 1199
PctI GAATGC 2 cut(s) 1151, 1153
PdmI GAANNNNTTC 1 cut(s) 1151
PfeI GAWTC 7 cut(s) 137, 142, 155, 164, 248, 275, 451
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 6 cut(s) 7, 38, 208, 769, 1216, 1239
PleI GAGTC 3 cut(s) 81, 283, 311
PpsI GAGTC 3 cut(s) 81, 283, 311
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 1219
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 2 cut(s) 662, 810
RsaI GTAC 3 cut(s) 203, 685, 1168
RsaNI GTAC 3 cut(s) 202, 684, 1167
SaqAI TTAA 5 cut(s) 473, 528, 591, 708, 897
SatI GCNGC 6 cut(s) 6, 37, 207, 768, 1215, 1238
Sau3AI GATC 6 cut(s) 220, 327, 373, 565, 662, 810
Sau96I GGNCC 1 cut(s) 1219
SchI GAGTC 3 cut(s) 81, 283, 311
SfaNI GCATC 4 cut(s) 739, 748, 855, 903
SfcI CTRYAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 140
SgrAI CRCCGGYG 1 cut(s) 383
SinI GGWCC 1 cut(s) 1219
SmlI CTYRAG 4 cut(s) 27, 626, 794, 1241
SmoI CTYRAG 4 cut(s) 27, 626, 794, 1241
Sse9I AATT 5 cut(s) 443, 611, 891, 989, 1232
SsiI CCGC 3 cut(s) 37, 206, 1217
SspMI CTAG 2 cut(s) 459, 1097
StyI CCWWGG 4 cut(s) 40, 216, 603, 942
TaaI ACNGT 1 cut(s) 1200
TaiI ACGT 1 cut(s) 1010
TaqI TCGA 7 cut(s) 140, 189, 251, 326, 454, 564, 1193
TasI AATT 5 cut(s) 443, 611, 891, 989, 1232
TauI GCSGC 2 cut(s) 39, 209
TfiI GAWTC 7 cut(s) 137, 142, 155, 164, 248, 275, 451
Tru1I TTAA 5 cut(s) 473, 528, 591, 708, 897
Tru9I TTAA 5 cut(s) 473, 528, 591, 708, 897
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 4 cut(s) 5, 767, 1214, 1237
Tsp45I GTSAC 1 cut(s) 937
TspGWI ACGGA 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 1219
XapI RAATTY 3 cut(s) 611, 891, 989
XceI RCATGY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 1151
XspI CTAG 2 cut(s) 459, 1097
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.