pycom09g15440

50S ribosomal protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
15305882 .. 15310613
4732 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15440.8

Sequence Viewer

Length: 1290 bp
ATGGCCGCTCTGAAGCTCCTCCTCTCATCCGCTCGCCGTCACTGCCTCTCAAACCCTCACTCCCGTCTCCACCCATCTCCATTTCTAAGCTACCACAGATCCCTAAGCTCCGAATCCGACCCAAACCCGAATCAGAACCCTCCGCAGCCTCCTAGACGCCAACCCGTGCCGGTCGAACCCGTTTCTTACACTCTCAAACCCAAAGAGCAATCCCTACCCGATCCAGATGCGACTCCCCAAGCAGCACCAACATTTCCGCCGCCTCCACAAATCCCCGGTGACTCGCCCAACTCATCGAGTCAGGACACTCGCGTCACCTGGACCCGTGAAGAGGCGCGTTTCATCAGGGACGTTCCATCTATATCTCCGGTATCGTACCCGGTGAAAGTTGCTCCCTTACCGGAAGATAGGGTCGCAGAGGAGAGCGGAGGTGGCGAAGGCGGAGCTGAAAAGGATGTGGATGGCGTGAAGGACTTGGAGAGAGAGAAGAGGAGGATCGAGGCCGATGGTCGGATGAGGAGGAGGCTTTTTAGGGTTCCTGAGGAGGAGGTGGTGGTTCCTTTTCCCGCGTTGATTAAGGTTGAGAAGAAGGAGAGCAAATCTATTCTCGAGGTCATGGACGCAATTCGCCAAGTCAAGGCTAATGCCCAGTGCAAATTTGATGAAACTGTTGAAGCTCATGTACAATTGGGTATTGATGCAAAGCGAAATGCGGTTCGTGGTAACATGACTTTGCCGCATGGTAGTGGGAAGGTTGTCAGGGTTGCTTTCTTTGCTGAAGGCTCAGATGCAGAAGAAGCTAGAGCTGCAGGAGCAGATATTGTTGGCGGTGTTGAACTGGTTGAGGAAATTGCAAGCAGTCATAAGCTCAATGTTGACAAGTGTTTTGCTACAAATGAAATGATTATGCGCCTGGCAAAGATTGCAAGAATTCTTAGAGAGCGTGGTTTGATGCCTGACCGTAAACTAGGTACTGTCACCAATGACATTACTGGAGCACTGCAGAAGGTAAGACAAGGTCATATTGAGTATAGAATGGACAGAACATCAATTGTACATGTGGGACTTGGAAAGGTGAGCTTCACGGAGGAGTATCTGCAAGAGAACATTGGTGCATTTATGAGTTCTCTTTTGCTGGCAAAGCCTACAGGTTTAAAAAAGTCTTCCAAATATGCGGGGTATATTAACTCGTTCCATATATGTAGCACGATGGGTCCAGGATTCCCGGTTTCAATACAGTCATTGTCCAAAGCTGCAGATCACTACAACAAAGTGCACCTCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

430

Amino Acids

47.24

Weight (kDa)

8.97

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccBSI CCGCTC 3 cut(s) 8, 32, 426
AccII CGCG 3 cut(s) 312, 337, 569
AclWI GGATC 3 cut(s) 93, 215, 503
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 656, 930
AcuI CTGAAG 2 cut(s) 32, 798
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 4 cut(s) 377, 684, 973, 1056
AfiI CCNNNNNNNGG 3 cut(s) 331, 510, 637
AflIII ACRYGT 1 cut(s) 1057
AgsI TTSAA 3 cut(s) 674, 836, 1233
AjnI CCWGG 3 cut(s) 317, 912, 1216
Alw21I GWGCWC 2 cut(s) 1000, 1278
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 1274
AlwI GGATC 3 cut(s) 93, 215, 503
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 2 cut(s) 3, 501
ApaLI GTGCAC 1 cut(s) 1274
ApeKI GCWGC 4 cut(s) 145, 242, 806, 1253
ApoI RAATTY 2 cut(s) 656, 930
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AspLEI GCGC 2 cut(s) 337, 912
AspS9I GGNCC 2 cut(s) 321, 1214
AsuC2I CCSGG 3 cut(s) 276, 380, 1226
AsuHPI GGTGA 5 cut(s) 290, 307, 394, 970, 1087
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 2 cut(s) 321, 1214
AxyI CCTNAGG 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 1278
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BbsI GAAGAC 1 cut(s) 1155
Bbv12I GWGCWC 2 cut(s) 1000, 1278
BbvI GCAGC 4 cut(s) 157, 254, 793, 1240
BccI CCATC 5 cut(s) 82, 364, 455, 500, 1204
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 3 cut(s) 319, 914, 1218
BcnI CCSGG 3 cut(s) 276, 380, 1226
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 153, 801, 968
BfmI CTRYAG 4 cut(s) 807, 1001, 1146, 1254
BisI GCNGC 7 cut(s) 6, 146, 243, 260, 737, 807, 1254
BlsI GCNGC 7 cut(s) 7, 147, 244, 261, 738, 808, 1255
Bme1390I CCNGG 6 cut(s) 276, 319, 380, 914, 1218, 1226
Bme18I GGWCC 2 cut(s) 321, 1214
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 2 cut(s) 321, 1214
BmiI GGNNCC 4 cut(s) 323, 537, 558, 1215
BmrFI CCNGG 6 cut(s) 276, 319, 380, 914, 1218, 1226
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 4 cut(s) 217, 688, 778, 942
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 1155
BpmI CTGGAG 1 cut(s) 1014
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 1265
BpuMI CCSGG 3 cut(s) 276, 380, 1226
BsaHI GRCGYC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 2 cut(s) 367, 400
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 510, 637
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 649, 843, 997
Bse21I CCTNAGG 1 cut(s) 540
BseBI CCWGG 3 cut(s) 319, 914, 1218
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 4 cut(s) 26, 460, 466, 519
BseLI CCNNNNNNNGG 3 cut(s) 331, 510, 637
BseMII CTCAG 2 cut(s) 531, 798
BseNI ACTGG 3 cut(s) 649, 843, 997
BseRI GAGGAG 9 cut(s) 8, 11, 434, 505, 532, 535, 557, 560, 1103
BseSI GKGCMC 1 cut(s) 1278
BseXI GCAGC 4 cut(s) 157, 254, 793, 1240
Bsh1236I CGCG 3 cut(s) 312, 337, 569
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 5, 503
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 1000, 1278
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 6 cut(s) 170, 276, 368, 380, 401, 1226
BslFI GGGAC 2 cut(s) 362, 1077
BslI CCNNNNNNNGG 3 cut(s) 331, 510, 637
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 362, 1077
BsnI GGCC 2 cut(s) 5, 503
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 1000, 1278
Bsp1407I TGTACA 2 cut(s) 682, 1054
Bsp143I GATC 4 cut(s) 98, 220, 495, 1258
BspANI GGCC 2 cut(s) 5, 503
BspCNI CTCAG 2 cut(s) 532, 797
BspFNI CGCG 3 cut(s) 312, 337, 569
BspLI GGNNCC 4 cut(s) 323, 537, 558, 1215
BspMAI CTGCAG 3 cut(s) 811, 1005, 1258
BspPI GGATC 3 cut(s) 93, 215, 503
BsrBI CCGCTC 3 cut(s) 8, 32, 426
BsrFI RCCGGY 1 cut(s) 169
BsrGI TGTACA 2 cut(s) 682, 1054
BsrI ACTGG 3 cut(s) 649, 843, 997
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 4 cut(s) 98, 220, 495, 1258
BssNI GRCGYC 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 319, 914, 1218
Bst4CI ACNGT 4 cut(s) 670, 962, 976, 1239
Bst6I CTCTTC 2 cut(s) 324, 482
BstACI GRCGYC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 923
BstAUI TGTACA 2 cut(s) 682, 1054
BstC8I GCNNGC 3 cut(s) 34, 856, 1137
BstDEI CTNAG 5 cut(s) 86, 104, 540, 784, 935
BstF5I GGATG 4 cut(s) 26, 460, 466, 519
BstFNI CGCG 3 cut(s) 312, 337, 569
BstHHI GCGC 2 cut(s) 337, 912
BstKTI GATC 4 cut(s) 101, 223, 498, 1261
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 98, 220, 495, 1258
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 8 cut(s) 42, 432, 773, 797, 806, 812, 923, 1141
BstNI CCWGG 3 cut(s) 319, 914, 1218
BstNSI RCATGY 1 cut(s) 1061
BstSCI CCNGG 6 cut(s) 274, 317, 378, 912, 1216, 1224
BstSFI CTRYAG 4 cut(s) 807, 1001, 1146, 1254
BstSLI GKGCMC 1 cut(s) 1278
BstUI CGCG 3 cut(s) 312, 337, 569
BstV1I GCAGC 4 cut(s) 157, 254, 793, 1240
BstV2I GAAGAC 1 cut(s) 1155
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 540
BsuRI GGCC 2 cut(s) 5, 503
BtsCI GGATG 4 cut(s) 26, 460, 466, 519
BtsI GCAGTG 2 cut(s) 40, 998
BtsIMutI CAGTG 3 cut(s) 40, 656, 998
Cac8I GCNNGC 3 cut(s) 34, 856, 1137
CfoI GCGC 2 cut(s) 337, 912
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 321, 1214
CseI GACGC 3 cut(s) 165, 301, 629
Csp6I GTAC 4 cut(s) 376, 683, 972, 1055
CviAII CATG 5 cut(s) 616, 680, 727, 740, 1058
CviQI GTAC 4 cut(s) 376, 683, 972, 1055
DdeI CTNAG 5 cut(s) 86, 104, 540, 784, 935
DpnI GATC 4 cut(s) 100, 222, 497, 1260
DpnII GATC 4 cut(s) 98, 220, 495, 1258
DraI TTTAAA 1 cut(s) 1155
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 324, 482
EarI CTCTTC 2 cut(s) 324, 482
EciI GGCGGA 2 cut(s) 246, 456
Eco47I GGWCC 2 cut(s) 321, 1214
Eco57I CTGAAG 2 cut(s) 32, 798
Eco81I CCTNAGG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 930
EcoRII CCWGG 3 cut(s) 317, 912, 1216
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 5 cut(s) 619, 683, 730, 743, 1061
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 2 cut(s) 362, 1077
FatI CATG 5 cut(s) 615, 679, 726, 739, 1057
FauI CCCGC 2 cut(s) 574, 1168
Fnu4HI GCNGC 7 cut(s) 6, 146, 243, 260, 737, 807, 1254
FokI GGATG 4 cut(s) 13, 467, 473, 526
Fsp4HI GCNGC 7 cut(s) 6, 146, 243, 260, 737, 807, 1254
FspBI CTAG 3 cut(s) 153, 801, 968
GlaI GCGC 2 cut(s) 336, 911
GluI GCNGC 7 cut(s) 6, 146, 243, 260, 737, 807, 1254
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 2 cut(s) 5, 503
HapII CCGG 6 cut(s) 170, 276, 368, 380, 401, 1226
HgaI GACGC 3 cut(s) 165, 301, 629
HhaI GCGC 2 cut(s) 337, 912
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 5 cut(s) 619, 683, 730, 743, 1061
Hin6I GCGC 2 cut(s) 335, 910
HinP1I GCGC 2 cut(s) 335, 910
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HinfI GANTC 6 cut(s) 113, 130, 232, 281, 298, 1221
HpaII CCGG 6 cut(s) 170, 276, 368, 380, 401, 1226
HphI GGTGA 5 cut(s) 290, 307, 394, 970, 1087
Hpy166II GTNNAC 3 cut(s) 877, 965, 1276
Hpy188I TCNGA 6 cut(s) 12, 112, 118, 135, 513, 787
Hpy188III TCNNGA 4 cut(s) 224, 302, 539, 608
Hpy8I GTNNAC 3 cut(s) 877, 965, 1276
HpyAV CCTTC 6 cut(s) 431, 463, 583, 745, 773, 1000
HpyCH4III ACNGT 4 cut(s) 670, 962, 976, 1239
HpyCH4IV ACGT 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 8 cut(s) 42, 432, 773, 797, 806, 812, 923, 1141
HpyF3I CTNAG 5 cut(s) 86, 104, 540, 784, 935
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 5 cut(s) 619, 683, 730, 743, 1061
HspAI GCGC 2 cut(s) 335, 910
Kzo9I GATC 4 cut(s) 98, 220, 495, 1258
LmnI GCTCC 6 cut(s) 21, 113, 397, 443, 812, 995
Lsp1109I GCAGC 4 cut(s) 157, 254, 793, 1240
LweI GCATC 4 cut(s) 217, 688, 778, 942
MaeI CTAG 3 cut(s) 153, 801, 968
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 5 cut(s) 38, 278, 313, 722, 976
MalI GATC 4 cut(s) 100, 222, 497, 1260
MbiI CCGCTC 3 cut(s) 8, 32, 426
MboI GATC 4 cut(s) 98, 220, 495, 1258
MboII GAAGA 6 cut(s) 341, 416, 499, 598, 806, 1155
MfeI CAATTG 2 cut(s) 686, 1050
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 1000, 1278
MluCI AATT 6 cut(s) 624, 656, 686, 849, 930, 1050
MlyI GAGTC 3 cut(s) 226, 275, 307
MmeI TCCRAC 2 cut(s) 141, 491
MseI TTAA 4 cut(s) 576, 1154, 1185, 1288
MslI CAYNNNNRTG 1 cut(s) 744
MspI CCGG 6 cut(s) 170, 276, 368, 380, 401, 1226
MspR9I CCNGG 6 cut(s) 276, 319, 380, 914, 1218, 1226
MunI CAATTG 2 cut(s) 686, 1050
MvaI CCWGG 3 cut(s) 319, 914, 1218
MvnI CGCG 3 cut(s) 312, 337, 569
MwoI GCNNNNNNNGC 8 cut(s) 42, 432, 773, 797, 806, 812, 923, 1141
NciI CCSGG 3 cut(s) 276, 380, 1226
NdeII GATC 4 cut(s) 98, 220, 495, 1258
NlaIII CATG 5 cut(s) 619, 683, 730, 743, 1061
NlaIV GGNNCC 4 cut(s) 323, 537, 558, 1215
NmuCI GTSAC 4 cut(s) 38, 278, 313, 976
NspI RCATGY 1 cut(s) 1061
PaeR7I CTCGAG 1 cut(s) 608
PciI ACATGT 1 cut(s) 1057
PfeI GAWTC 3 cut(s) 113, 130, 1221
PflFI GACNNNGTC 1 cut(s) 1017
PfoI TCCNGGA 1 cut(s) 1216
PkrI GCNGC 7 cut(s) 7, 147, 244, 261, 738, 808, 1255
PleI GAGTC 3 cut(s) 226, 275, 306
PpsI GAGTC 3 cut(s) 226, 275, 306
PscI ACATGT 1 cut(s) 1057
Psp6I CCWGG 3 cut(s) 317, 912, 1216
PspGI CCWGG 3 cut(s) 317, 912, 1216
PspN4I GGNNCC 4 cut(s) 323, 537, 558, 1215
PspPI GGNCC 2 cut(s) 321, 1214
PstI CTGCAG 3 cut(s) 811, 1005, 1258
PsuI RGATCY 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 1017
RsaI GTAC 4 cut(s) 377, 684, 973, 1056
RsaNI GTAC 4 cut(s) 376, 683, 972, 1055
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 4 cut(s) 576, 1154, 1185, 1288
SatI GCNGC 7 cut(s) 6, 146, 243, 260, 737, 807, 1254
Sau3AI GATC 4 cut(s) 98, 220, 495, 1258
Sau96I GGNCC 2 cut(s) 321, 1214
SchI GAGTC 3 cut(s) 226, 275, 307
ScrFI CCNGG 6 cut(s) 276, 319, 380, 914, 1218, 1226
SduI GDGCHC 2 cut(s) 1000, 1278
SfaNI GCATC 4 cut(s) 217, 688, 778, 942
SfcI CTRYAG 4 cut(s) 807, 1001, 1146, 1254
Sfr274I CTCGAG 1 cut(s) 608
SinI GGWCC 2 cut(s) 321, 1214
SlaI CTCGAG 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 608, 1280
SmoI CTYRAG 2 cut(s) 608, 1280
Sse9I AATT 6 cut(s) 624, 656, 686, 849, 930, 1050
SspMI CTAG 3 cut(s) 153, 801, 968
StyD4I CCNGG 6 cut(s) 274, 317, 378, 912, 1216, 1224
TaaI ACNGT 4 cut(s) 670, 962, 976, 1239
TaiI ACGT 1 cut(s) 354
TaqI TCGA 4 cut(s) 174, 296, 498, 609
TasI AATT 6 cut(s) 624, 656, 686, 849, 930, 1050
TatI WGTACW 2 cut(s) 682, 1054
TauI GCSGC 3 cut(s) 8, 262, 739
TfiI GAWTC 3 cut(s) 113, 130, 1221
Tru1I TTAA 4 cut(s) 576, 1154, 1185, 1288
Tru9I TTAA 4 cut(s) 576, 1154, 1185, 1288
TscAI CASTG 3 cut(s) 47, 656, 1005
TseFI GTSAC 4 cut(s) 38, 278, 313, 976
TseI GCWGC 4 cut(s) 145, 242, 806, 1253
Tsp45I GTSAC 4 cut(s) 38, 278, 313, 976
TspDTI ATGAA 3 cut(s) 331, 678, 912
TspGWI ACGGA 1 cut(s) 1100
TspRI CASTG 3 cut(s) 47, 656, 1005
Tth111I GACNNNGTC 1 cut(s) 1017
VneI GTGCAC 1 cut(s) 1274
VpaK11BI GGWCC 2 cut(s) 321, 1214
XapI RAATTY 2 cut(s) 656, 930
XceI RCATGY 1 cut(s) 1061
XhoI CTCGAG 1 cut(s) 608
XspI CTAG 3 cut(s) 153, 801, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.