Rroxscaffold_2G00114080

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010038
Physical Location & Seq
Reverse (-)
39978470 .. 39990962
12493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114080.1

Sequence Viewer

Length: 1149 bp
ATGGCAGCCCTGAAGCTCCCTCTTCTCCTCGGCTCGCCGCCACTGCTCCCATCTCCACCCATCTCCATTTCTAAGCCCGCTCCGATCGAACCCGTCTCCTACGCTCCCAAACCCAAACAACACTCCTCCTCACCCGACCCGGACCCGGCTCCGCAATCAGCACAAACACAACCGCCGCCACCGTCGCACGCGCCTCCTCACGACTCTCCCGACTCGCCGTGGACCCGAGAAGACGCCCGGTTCGTGAAGGACGGGCCTTCCATAACCCCGGTGTCGTACCCGGCCCGAGTGGCTCCGTTGCCGGAAGATAAGGTCTCGGAGGAAGGCGGAGAGGCGAGGCAGGATGAGCTGGAGAAGGAGAAGCAGAGGATCGAGCAGTCGAGAAGGAGGGTTTTTAGGGTAGAGGAGAATGTGGTGGTTCCTTTCCCCACGTTTCTTAAGGTGGAGAAGAAGGAGAGGAAGCCCATTCTTGATTTGATGGAAGCAATTCGACAAGTCAAGGCTACTGCCAAGTGCAACTTTGATGAAACTGTTGAAGCTCACGTGCAATTGGGTATTGATGCCAAGCGAAATGCAGTTCGTGGCAACATGACCTTGCCCCATGGTAGCGGAAAGGTAGTCAGGGTTGCTTTCTTTGCTGAAGGTGCAGATGCAGATGAAGCTAGAGCTGCTGGAGCAGATATTGTTGGTGGTGTTGACCTTGTGGAGGAAATTGCAAGCAGTCGTAAACTCAATGTTGACAAGTGTTTTGCAACAAATGAAATGGTTATGCGTCTAGCGAAGATAGCAAGGATTCTTAGAGAGCGTGGTTTAATGCCTGACCGAAAACTAGGTACTGTGACTAATGACATTGCTGGGGCACTACAAAAAGTAAGACAAGGTCATATTGAGTATAAAATGGACAGAACATCAATAGTTCATGTTGGGCTCGGAAAGGTAAGCTTTACAGAGGAGTATCTGCGTGAGAATGTTGGTGCATTTATGAGTTCTCTTTTGCTGGCAAAGCCTACGGGTTTAAAAAAATTGAGCATCCCCCTAGGTTTGGTTAATCGAGTGGAGATAACGTCTAGGAAAACCAAAGGGAGCCCAATCAACGATTCATCATCGTCACCGGGACACGCCTCCCACGAAAAAGTTAAAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L1

Protein Analysis

382

Amino Acids

41.72

Weight (kDa)

9.28

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 166 - 341 2.6e-42 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 80
AccII CGCG 1 cut(s) 191
AciI CCGC 7 cut(s) 38, 78, 152, 173, 176, 327, 609
AclWI GGATC 1 cut(s) 377
AcuI CTGAAG 2 cut(s) 32, 660
AcvI CACGTG 1 cut(s) 544
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 278, 835
AfiI CCNNNNNNNGG 3 cut(s) 145, 706, 1042
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 1 cut(s) 536
AjuI GAANNNNNNNTTGG 2 cut(s) 1081, 1113
AluBI AGCT 6 cut(s) 16, 349, 539, 662, 668, 942
AluI AGCT 6 cut(s) 16, 349, 539, 662, 668, 942
Alw26I GTCTC 2 cut(s) 100, 319
AlwI GGATC 1 cut(s) 377
Ama87I CYCGRG 2 cut(s) 225, 285
AoxI GGCC 2 cut(s) 254, 282
ApeKI GCWGC 2 cut(s) 5, 668
ArsI GACNNNNNNTTYG 4 cut(s) 224, 256, 731, 763
Asp700I GAANNNNTTC 1 cut(s) 486
AspA2I CCTAGG 1 cut(s) 1036
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 4 cut(s) 142, 222, 254, 283
AsuC2I CCSGG 6 cut(s) 140, 146, 238, 269, 281, 1113
AsuHPI GGTGA 2 cut(s) 123, 1101
AvaI CYCGRG 2 cut(s) 225, 285
AvaII GGWCC 2 cut(s) 142, 222
AvrII CCTAGG 1 cut(s) 1036
BaeGI GKGCMC 1 cut(s) 862
BanII GRGCYC 2 cut(s) 930, 1088
BbrPI CACGTG 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 17, 655
BccI CCATC 3 cut(s) 58, 68, 472
BceAI ACGGC 1 cut(s) 202
BcnI CCSGG 6 cut(s) 140, 146, 238, 269, 281, 1113
BcoDI GTCTC 2 cut(s) 100, 319
BfaI CTAG 5 cut(s) 663, 776, 830, 1037, 1068
BfrI CTTAAG 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 4 cut(s) 6, 38, 176, 669
BlnI CCTAGG 1 cut(s) 1036
BlsI GCNGC 4 cut(s) 7, 39, 177, 670
Bme1390I CCNGG 6 cut(s) 140, 146, 238, 269, 281, 1113
Bme18I GGWCC 2 cut(s) 142, 222
BmeT110I CYCGRG 2 cut(s) 225, 285
BmgT120I GGNCC 4 cut(s) 142, 222, 254, 283
BmiI GGNNCC 6 cut(s) 144, 150, 224, 294, 420, 1085
BmrFI CCNGG 6 cut(s) 140, 146, 238, 269, 281, 1113
BmsI GCATC 3 cut(s) 550, 640, 1038
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 371, 693
BpuMI CCSGG 6 cut(s) 140, 146, 238, 269, 281, 1113
BsaAI YACGTR 1 cut(s) 544
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 5 cut(s) 28, 218, 267, 601, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 706, 1042
Bse3DI GCAATG 1 cut(s) 849
BseDI CCNNGG 5 cut(s) 28, 218, 267, 601, 1036
BseGI GGATG 2 cut(s) 349, 1029
BseLI CCNNNNNNNGG 3 cut(s) 145, 706, 1042
BseMI GCAATG 1 cut(s) 849
BseRI GAGGAG 6 cut(s) 17, 115, 118, 186, 419, 965
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 2 cut(s) 17, 655
BseYI CCCAGC 1 cut(s) 854
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 256, 284
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 2 cut(s) 225, 285
BsiSI CCGG 7 cut(s) 140, 146, 238, 269, 281, 302, 1112
BslFI GGGAC 1 cut(s) 1128
BslI CCNNNNNNNGG 3 cut(s) 145, 706, 1042
BsmAI GTCTC 2 cut(s) 100, 319
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 1128
BsnI GGCC 2 cut(s) 256, 284
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 2 cut(s) 225, 285
Bsp1286I GDGCHC 3 cut(s) 862, 930, 1088
Bsp143I GATC 2 cut(s) 84, 369
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 7 cut(s) 38, 78, 152, 173, 176, 327, 609
BspANI GGCC 2 cut(s) 256, 284
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 6 cut(s) 144, 150, 224, 294, 420, 1085
BspPI GGATC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 849
BssECI CCNNGG 5 cut(s) 28, 218, 267, 601, 1036
BssMI GATC 2 cut(s) 84, 369
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 601, 1036
Bst4CI ACNGT 3 cut(s) 183, 532, 838
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 544
BstC8I GCNNGC 5 cut(s) 35, 78, 189, 718, 999
BstDEI CTNAG 2 cut(s) 72, 797
BstDSI CCRYGG 2 cut(s) 218, 601
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 2 cut(s) 349, 1029
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 87, 372
BstMAI GTCTC 2 cut(s) 100, 319
BstMBI GATC 2 cut(s) 84, 369
BstMCI CGRYCG 1 cut(s) 87
BstSCI CCNGG 6 cut(s) 138, 144, 236, 267, 279, 1111
BstSLI GKGCMC 1 cut(s) 862
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 17, 655
BstV2I GAAGAC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 256, 284
BtgI CCRYGG 2 cut(s) 218, 601
BtsCI GGATG 2 cut(s) 349, 1029
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 5 cut(s) 35, 78, 189, 718, 999
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 4 cut(s) 142, 222, 254, 283
CseI GACGC 2 cut(s) 242, 761
Csp6I GTAC 2 cut(s) 277, 834
CviAII CATG 3 cut(s) 589, 602, 920
CviQI GTAC 2 cut(s) 277, 834
DdeI CTNAG 2 cut(s) 72, 797
DpnI GATC 2 cut(s) 86, 371
DpnII GATC 2 cut(s) 84, 369
DraI TTTAAA 1 cut(s) 1017
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 601, 1036
Eco24I GRGCYC 2 cut(s) 930, 1088
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 142, 222
Eco57I CTGAAG 2 cut(s) 32, 660
Eco72I CACGTG 1 cut(s) 544
Eco88I CYCGRG 2 cut(s) 225, 285
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoT14I CCWWGG 2 cut(s) 601, 1036
EcoT38I GRGCYC 2 cut(s) 930, 1088
ErhI CCWWGG 2 cut(s) 601, 1036
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 3 cut(s) 592, 605, 923
FaiI YATR 8 cut(s) 263, 590, 603, 770, 885, 894, 921, 983
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 926, 958
FaqI GGGAC 1 cut(s) 1128
FatI CATG 3 cut(s) 588, 601, 919
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 4 cut(s) 6, 38, 176, 669
FokI GGATG 2 cut(s) 356, 1016
FriOI GRGCYC 2 cut(s) 930, 1088
Fsp4HI GCNGC 4 cut(s) 6, 38, 176, 669
FspBI CTAG 5 cut(s) 663, 776, 830, 1037, 1068
GlaI GCGC 1 cut(s) 192
GluI GCNGC 4 cut(s) 6, 38, 176, 669
GsaI CCCAGC 1 cut(s) 858
GsuI CTGGAG 2 cut(s) 371, 693
HaeIII GGCC 2 cut(s) 256, 284
HapII CCGG 7 cut(s) 140, 146, 238, 269, 281, 302, 1112
HgaI GACGC 2 cut(s) 242, 761
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 3 cut(s) 592, 605, 923
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 2 cut(s) 697, 739
HindII GTYRAC 2 cut(s) 697, 739
HindIII AAGCTT 1 cut(s) 940
HinfI GANTC 4 cut(s) 203, 212, 793, 1097
HpaII CCGG 7 cut(s) 140, 146, 238, 269, 281, 302, 1112
HphI GGTGA 2 cut(s) 123, 1101
Hpy166II GTNNAC 4 cut(s) 222, 697, 728, 739
Hpy188I TCNGA 3 cut(s) 84, 319, 932
Hpy188III TCNNGA 5 cut(s) 200, 209, 244, 381, 470
Hpy8I GTNNAC 4 cut(s) 222, 697, 728, 739
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 7 cut(s) 241, 267, 317, 349, 378, 445, 635
HpyCH4III ACNGT 3 cut(s) 183, 532, 838
HpyCH4IV ACGT 3 cut(s) 431, 543, 1064
HpyCH4V TGCA 8 cut(s) 516, 547, 575, 647, 653, 716, 752, 977
HpyF3I CTNAG 2 cut(s) 72, 797
HpySE526I ACGT 3 cut(s) 431, 543, 1064
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 3 cut(s) 592, 605, 923
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 84, 369
LmnI GCTCC 8 cut(s) 21, 51, 85, 109, 154, 298, 674, 1083
Lsp1109I GCAGC 2 cut(s) 17, 655
LweI GCATC 3 cut(s) 550, 640, 1038
MaeI CTAG 5 cut(s) 663, 776, 830, 1037, 1068
MaeII ACGT 3 cut(s) 431, 543, 1064
MaeIII GTNAC 2 cut(s) 838, 1107
MalI GATC 2 cut(s) 86, 371
MbiI CCGCTC 1 cut(s) 80
MboI GATC 2 cut(s) 84, 369
MboII GAAGA 5 cut(s) 14, 242, 317, 460, 793
MfeI CAATTG 1 cut(s) 548
MhlI GDGCHC 3 cut(s) 862, 930, 1088
MluCI AATT 4 cut(s) 486, 548, 711, 1022
MlyI GAGTC 2 cut(s) 197, 206
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 5 cut(s) 438, 812, 1016, 1047, 1137
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 7 cut(s) 140, 146, 238, 269, 281, 302, 1112
MspR9I CCNGG 6 cut(s) 140, 146, 238, 269, 281, 1113
MunI CAATTG 1 cut(s) 548
MvnI CGCG 1 cut(s) 191
NciI CCSGG 6 cut(s) 140, 146, 238, 269, 281, 1113
NcoI CCATGG 1 cut(s) 601
NdeII GATC 2 cut(s) 84, 369
NlaIII CATG 3 cut(s) 592, 605, 923
NlaIV GGNNCC 6 cut(s) 144, 150, 224, 294, 420, 1085
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 2 cut(s) 838, 1107
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 240, 1125
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 793, 1097
PflFI GACNNNGTC 1 cut(s) 879
PkrI GCNGC 4 cut(s) 7, 39, 177, 670
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 2 cut(s) 197, 206
PmaCI CACGTG 1 cut(s) 544
PmlI CACGTG 1 cut(s) 544
PpsI GAGTC 2 cut(s) 197, 206
Ppu21I YACGTR 1 cut(s) 544
PspCI CACGTG 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 854
PspN4I GGNNCC 6 cut(s) 144, 150, 224, 294, 420, 1085
PspPI GGNCC 4 cut(s) 142, 222, 254, 283
PsyI GACNNNGTC 1 cut(s) 879
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 2 cut(s) 278, 835
RsaNI GTAC 2 cut(s) 277, 834
SaqAI TTAA 5 cut(s) 438, 812, 1016, 1047, 1137
SatI GCNGC 4 cut(s) 6, 38, 176, 669
Sau3AI GATC 2 cut(s) 84, 369
Sau96I GGNCC 4 cut(s) 142, 222, 254, 283
SchI GAGTC 2 cut(s) 197, 206
ScrFI CCNGG 6 cut(s) 140, 146, 238, 269, 281, 1113
SduI GDGCHC 3 cut(s) 862, 930, 1088
SfaNI GCATC 3 cut(s) 550, 640, 1038
SinI GGWCC 2 cut(s) 142, 222
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 4 cut(s) 486, 548, 711, 1022
SsiI CCGC 7 cut(s) 38, 78, 152, 173, 176, 327, 609
SspMI CTAG 5 cut(s) 663, 776, 830, 1037, 1068
StyD4I CCNGG 6 cut(s) 138, 144, 236, 267, 279, 1111
StyI CCWWGG 2 cut(s) 601, 1036
TaaI ACNGT 3 cut(s) 183, 532, 838
TaiI ACGT 3 cut(s) 434, 546, 1067
TaqI TCGA 5 cut(s) 87, 372, 380, 490, 1051
TaqII GACCGA 1 cut(s) 837
TasI AATT 4 cut(s) 486, 548, 711, 1022
TauI GCSGC 2 cut(s) 40, 178
TfiI GAWTC 2 cut(s) 793, 1097
Tru1I TTAA 5 cut(s) 438, 812, 1016, 1047, 1137
Tru9I TTAA 5 cut(s) 438, 812, 1016, 1047, 1137
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 838, 1107
TseI GCWGC 2 cut(s) 5, 668
Tsp45I GTSAC 2 cut(s) 838, 1107
TspDTI ATGAA 5 cut(s) 540, 672, 774, 908, 1089
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 48
Tth111I GACNNNGTC 1 cut(s) 879
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 142, 222
XagI CCTNNNNNAGG 1 cut(s) 704
XmaJI CCTAGG 1 cut(s) 1036
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 5 cut(s) 663, 776, 830, 1037, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.