Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8049210.1

Orthogroup ID

OG0010038

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 559

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8049210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 533 bp

tctcctcggctcgccgtcactgctcccatctccacccgtctccatttctaaggtccctcacctcccaatcagatcaaattccctctcctcccgaaccccttaaaccccaacccgctccgatccaacccgtctcctacgctcccaaacccaaacaacactcctcctcacccgacccggatccggacccggctccgcaatcagcacaaacacaaccgccgccaccgtcgcacgcgcctcctcacgactcgccgtggacccgagaagacgcccggttcgtgaaggacgggccttccataaccccggtgtcgtacccggcccgagtggctccgttgccggaagataaggtctcggaggaaggcggcgacgcgaggcagggtgagctggagaaggagaagcagaggatcgagcagtcgagaaggagggtttttagggtagaggagaatgtggtggttcctttccccacgtttcttaaggtggagaagaaggaaaggaagcccattcttgatttgatggaagcaattcgacaagtcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

177

Amino Acids

19.82

Weight (kDa)

8.71

Isoelectric Point (pI)

94.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42710
fragaria_vesca	FvH4_6g27601 FvH4_6g27601
malus_domestica	MD11G1004300.v1.1 MD17G1265500.v1.1
prunus_persica	Prupe.3G115600_v2.0.a1 Prupe.3G115600_v2.0.a1
pyrus_communis	pycom09g15440 pycom17g26520
rosa_chinensis	RchiOBHm_Chr2g0130111
rosa_laevigata	RLG00000019128
rosa_multiflora	Rmu_co8049210.1_g000001 Rmu_sc0000516.1_g000074 Rmu_sc0010460.1_g000013
rosa_roxburghii	Rroxscaffold_2G00114080
rosa_rugosa	Rorug02G0291100
rosa_samantha	Rh2AG342900 Rh2BG350600 Rh2CG330000 Rh2DG369100
rosa_wichuraiana	Rw2G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	2 cut(s)	232, 367
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	113, 193, 214, 217, 359
AclWI	GGATC	4 cut(s)	114, 172, 185, 409
AcsI	RAATTY	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflII	CTTAAG	1 cut(s)	469
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	44, 135, 351
AlwI	GGATC	4 cut(s)	114, 172, 185, 409
Ama87I	CYCGRG	2 cut(s)	257, 317
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	2 cut(s)	286, 314
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	5 cut(s)	53, 183, 254, 286, 315
AsuC2I	CCSGG	5 cut(s)	175, 187, 270, 301, 313
AsuHPI	GGTGA	3 cut(s)	51, 158, 388
AvaI	CYCGRG	2 cut(s)	257, 317
AvaII	GGWCC	3 cut(s)	53, 183, 254
BamHI	GGATCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	269
BccI	CCATC	2 cut(s)	35, 504
BceAI	ACGGC	1 cut(s)	234
BcnI	CCSGG	5 cut(s)	175, 187, 270, 301, 313
BcoDI	GTCTC	3 cut(s)	44, 135, 351
BfrI	CTTAAG	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	217, 360
BlsI	GCNGC	2 cut(s)	218, 361
Bme1390I	CCNGG	5 cut(s)	175, 187, 270, 301, 313
Bme18I	GGWCC	3 cut(s)	53, 183, 254
BmeT110I	CYCGRG	2 cut(s)	257, 317
BmgT120I	GGNCC	5 cut(s)	53, 183, 254, 286, 315
BmiI	GGNNCC	7 cut(s)	55, 179, 185, 191, 256, 326, 452
BmrFI	CCNGG	5 cut(s)	175, 187, 270, 301, 313
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	403
BpuMI	CCSGG	5 cut(s)	175, 187, 270, 301, 313
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	5, 250, 299
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	5, 250, 299
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseRI	GAGGAG	5 cut(s)	77, 150, 153, 227, 451
Bsh1236I	CGCG	2 cut(s)	232, 367
BshFI	GGCC	2 cut(s)	288, 316
BsiHKCI	CYCGRG	2 cut(s)	257, 317
BsiSI	CCGG	7 cut(s)	175, 181, 187, 270, 301, 313, 334
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	3 cut(s)	44, 135, 351
BsmBI	CGTCTC	2 cut(s)	44, 135
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	288, 316
Bso31I	GGTCTC	1 cut(s)	351
BsoBI	CYCGRG	2 cut(s)	257, 317
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	72, 119, 177, 401
BspACI	CCGC	5 cut(s)	113, 193, 214, 217, 359
BspANI	GGCC	2 cut(s)	288, 316
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	232, 367
BspLI	GGNNCC	7 cut(s)	55, 179, 185, 191, 256, 326, 452
BspPI	GGATC	4 cut(s)	114, 172, 185, 409
BspTI	CTTAAG	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	5, 250, 299
BssMI	GATC	4 cut(s)	72, 119, 177, 401
BssNI	GRCGYC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	12, 230
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	232, 367
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	75, 122, 180, 404
BstMAI	GTCTC	3 cut(s)	44, 135, 351
BstMBI	GATC	4 cut(s)	72, 119, 177, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 225, 322, 378
BstSCI	CCNGG	5 cut(s)	173, 185, 268, 299, 311
BstUI	CGCG	2 cut(s)	232, 367
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	288, 316
BtgI	CCRYGG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	12, 230
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	5 cut(s)	53, 183, 254, 286, 315
CseI	GACGC	2 cut(s)	274, 373
Csp6I	GTAC	1 cut(s)	309
CviJI	RGCY	7 cut(s)	10, 190, 288, 316, 325, 381, 495
CviKI_1	RGCY	7 cut(s)	10, 190, 288, 316, 325, 381, 495
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	4 cut(s)	74, 121, 179, 403
DpnII	GATC	4 cut(s)	72, 119, 177, 401
Eco31I	GGTCTC	1 cut(s)	351
Eco47I	GGWCC	3 cut(s)	53, 183, 254
Eco88I	CYCGRG	2 cut(s)	257, 317
EcoO109I	RGGNCCY	1 cut(s)	53
Esp3I	CGTCTC	2 cut(s)	44, 135
FaiI	YATR	1 cut(s)	295
FaqI	GGGAC	1 cut(s)	39
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	217, 360
Fsp4HI	GCNGC	2 cut(s)	217, 360
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	217, 360
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	288, 316
HapII	CCGG	7 cut(s)	175, 181, 187, 270, 301, 313, 334
HgaI	GACGC	2 cut(s)	274, 373
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	7 cut(s)	175, 181, 187, 270, 301, 313, 334
HphI	GGTGA	3 cut(s)	51, 158, 388
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	72, 119, 351
Hpy188III	TCNNGA	6 cut(s)	91, 181, 241, 276, 413, 502
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	2 cut(s)	228, 367
HpyAV	CCTTC	6 cut(s)	273, 299, 349, 381, 410, 477
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 225, 322, 378
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	1 cut(s)	266
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	72, 119, 177, 401
LmnI	GCTCC	5 cut(s)	28, 120, 144, 195, 330
LpnPI	CCDG	9 cut(s)	188, 194, 200, 283, 314, 326, 347, 358, 367
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	74, 121, 179, 403
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	4 cut(s)	72, 119, 177, 401
MboII	GAAGA	3 cut(s)	274, 349, 492
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	2 cut(s)	77, 518
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	147
MroI	TCCGGA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	2 cut(s)	101, 470
MspCI	CTTAAG	1 cut(s)	469
MspI	CCGG	7 cut(s)	175, 181, 187, 270, 301, 313, 334
MspR9I	CCNGG	5 cut(s)	175, 187, 270, 301, 313
MvnI	CGCG	2 cut(s)	232, 367
MwoI	GCNNNNNNNGC	4 cut(s)	20, 225, 322, 378
NciI	CCSGG	5 cut(s)	175, 187, 270, 301, 313
NdeII	GATC	4 cut(s)	72, 119, 177, 401
NlaIV	GGNNCC	7 cut(s)	55, 179, 185, 191, 256, 326, 452
NmuCI	GTSAC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	218, 361
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
PspN4I	GGNNCC	7 cut(s)	55, 179, 185, 191, 256, 326, 452
PspPI	GGNCC	5 cut(s)	53, 183, 254, 286, 315
PspPPI	RGGWCCY	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	101, 470
SatI	GCNGC	2 cut(s)	217, 360
Sau3AI	GATC	4 cut(s)	72, 119, 177, 401
Sau96I	GGNCC	5 cut(s)	53, 183, 254, 286, 315
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	5 cut(s)	175, 187, 270, 301, 313
SetI	ASST	6 cut(s)	55, 64, 347, 383, 466, 476
SinI	GGWCC	3 cut(s)	53, 183, 254
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	2 cut(s)	77, 518
SsiI	CCGC	5 cut(s)	113, 193, 214, 217, 359
StyD4I	CCNGG	5 cut(s)	173, 185, 268, 299, 311
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	404, 412, 522
TasI	AATT	2 cut(s)	77, 518
TauI	GCSGC	2 cut(s)	219, 362
Tru1I	TTAA	2 cut(s)	101, 470
Tru9I	TTAA	2 cut(s)	101, 470
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	53, 183, 254
XapI	RAATTY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.