Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010038

Physical Location & Seq

Genomic Coordinates Reverse (-)

9760131 .. 9765710

Gene Structure 5580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G115600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGGCCCTGAAGCTTCTCCTCTCCTCAGCTCGCCGTCACTGCCTTTCCAAACCTCACTCCCATCTTCATCCACCTCCATTTCTAAGCTACCGCAGATCCTTTAGCTCCGAATCCGACACGACCCAGAACCCGAACCCAAACTCTCCCTCTCCTCAACCCCCTACTCGACAATCCGTGCCGATCGAACCCGTTTCCTACTCTCTCAAGCCCAAAGACCACTCCTTACCCGACCCAGACCCAACTTCCCAACCCGAACAAACATCACCACCGCCGCCGAGAGGGCCTCGGGACTTGCCCAACTCACCGAGTCAGGAAACTCGCTCCGAGTGGACCCGTGAAGAGGCTCGGTTCTTAAGGCACGTGCCCTCTATATCTCCGGTATCATACCGGGTCAAAGTTGCTCCGTTGCCGGAAGATAGGGTCCCGGAGGAGGCCGAGGGAGGCGAAACCGGAGCTGACAAGGGTGGGGAGAGTGTGAAGGATCACGAGGCTTACTTGGAGAGAGAGAAGAAGAGGATCGAGGCGGATGGTCGATTGAGAAGGAGGCTTTTCAGGGTACCGGAGGAGGAGGTGGTGGTTCCTTTTCCCACGTTGATTAACGTTGAGAAGAAGGAGAGGAAGCCTATTTTTGATGTAATGGACGCAATTCGCCATGTCAAGGCTAATGCCAAGTGCAAATTTGATGAAACTGTTGAAGCTCATGTCCAATTGGGTATTGACGCCAAGAGAAATGCAGTTCGTGGTAACATGACTTTGCCTCATGGTAGTGGGAAGGTTGTCAGGGTTGCTTTCTTTGCTGAGGGCGCAGATGCAGATGAAGCTAAAGCTGCAGGAGCAGATATTGTTGGCGGTGTTGAACTTGTGGAGGAAATTGCAAGCACTCATAAGCTCAATGTTGACAAGTGTTTTGCAACAAATGAAATGATTATGCGCCTGGCAAAGATTGCAAGGATTCTTAGAGAGCGTGGTTTGATGCCTGACCGGAAACTAGGCACTGTCACTAATGACATCTCTGGAGCACTGCAAAAAGTAAGACAAGGTCATATTGAGTATAGAATGGACAGAACATCAATTGTACACGTGGGACTTGGAAAGGTAAGCTTTACAGAGGAGTACCTGCGTGAGAACATTGGTGCCTTTATGAGTTCTCTTTTGCTGGCAAAGCCTACGGGATTAAAAAAGTCTTCCAAATATGCTGGGTATATTAACTCCTTCCACATATGTAGCACGATGGGTCCAGGAGTTCCAGTTTCAATACAGTCATTATCCAAAGCTGCAGATCACTACAATAAAATGCACCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

437

Amino Acids

48.41

Weight (kDa)

9.2

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42710
fragaria_vesca	FvH4_6g27601 FvH4_6g27601
malus_domestica	MD11G1004300.v1.1 MD17G1265500.v1.1
prunus_persica	Prupe.3G115600_v2.0.a1 Prupe.3G115600_v2.0.a1
pyrus_communis	pycom09g15440 pycom17g26520
rosa_chinensis	RchiOBHm_Chr2g0130111
rosa_laevigata	RLG00000019128
rosa_multiflora	Rmu_co8049210.1_g000001 Rmu_sc0000516.1_g000074 Rmu_sc0010460.1_g000013
rosa_roxburghii	Rroxscaffold_2G00114080
rosa_rugosa	Rorug02G0291100
rosa_samantha	Rh2AG342900 Rh2BG350600 Rh2CG330000 Rh2DG369100
rosa_wichuraiana	Rw2G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1128
Acc65I	GGTACC	1 cut(s)	559
AccB1I	GGYRCC	2 cut(s)	559, 1136
AciI	CCGC	6 cut(s)	5, 94, 272, 275, 527, 852
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	3 cut(s)	93, 492, 527
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	32
AcvI	CACGTG	2 cut(s)	364, 1084
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	3 cut(s)	561, 1080, 1118
AfiI	CCNNNNNNNGG	4 cut(s)	281, 343, 433, 661
AflII	CTTAAG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	1081
AgsI	TTSAA	3 cut(s)	698, 860, 1257
AjnI	CCWGG	2 cut(s)	936, 1240
Alw21I	GWGCWC	1 cut(s)	1024
AlwI	GGATC	3 cut(s)	93, 492, 527
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	6, 284, 435
ApeKI	GCWGC	2 cut(s)	830, 1277
ApoI	RAATTY	1 cut(s)	680
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
Asp718I	GGTACC	1 cut(s)	559
AspLEI	GCGC	2 cut(s)	809, 936
AspS9I	GGNCC	5 cut(s)	7, 284, 333, 424, 1238
AsuC2I	CCSGG	2 cut(s)	392, 428
AsuHPI	GGTGA	2 cut(s)	258, 297
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	3 cut(s)	333, 424, 1238
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	2 cut(s)	559, 1136
BauI	CACGAG	1 cut(s)	488
BbrPI	CACGTG	2 cut(s)	364, 1084
BbsI	GAAGAC	1 cut(s)	1179
Bbv12I	GWGCWC	1 cut(s)	1024
BbvCI	CCTCAGC	2 cut(s)	28, 801
BbvI	GCAGC	2 cut(s)	817, 1264
BccI	CCATC	3 cut(s)	72, 524, 1228
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	2 cut(s)	938, 1242
BcnI	CCSGG	2 cut(s)	392, 428
BfaI	CTAG	1 cut(s)	992
BfmI	CTRYAG	2 cut(s)	831, 1278
BfrI	CTTAAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	1128
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	6, 275, 831, 1278
BlsI	GCNGC	4 cut(s)	7, 276, 832, 1279
Bme1390I	CCNGG	4 cut(s)	392, 428, 938, 1242
Bme18I	GGWCC	3 cut(s)	333, 424, 1238
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	5 cut(s)	7, 284, 333, 424, 1238
BmiI	GGNNCC	7 cut(s)	335, 425, 426, 561, 582, 1138, 1239
BmrFI	CCNGG	4 cut(s)	392, 428, 938, 1242
BmsI	GCATC	2 cut(s)	802, 966
BpiI	GAAGAC	1 cut(s)	1179
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	1 cut(s)	1038
Bpu10I	CCTNAGC	2 cut(s)	28, 801
BpuEI	CTTGAG	2 cut(s)	191, 1289
BpuMI	CCSGG	2 cut(s)	392, 428
BsaAI	YACGTR	2 cut(s)	364, 1084
BsaHI	GRCGYC	1 cut(s)	723
BsaJI	CCNNGG	2 cut(s)	287, 438
BsaWI	WCCGGW	4 cut(s)	379, 452, 562, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	1236, 1266
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 343, 433, 661
Bse1I	ACTGG	1 cut(s)	1250
BseBI	CCWGG	2 cut(s)	938, 1242
BseDI	CCNNGG	2 cut(s)	287, 438
BseGI	GGATG	2 cut(s)	70, 535
BseLI	CCNNNNNNNGG	4 cut(s)	281, 343, 433, 661
BseMII	CTCAG	2 cut(s)	42, 792
BseNI	ACTGG	1 cut(s)	1250
BseRI	GAGGAG	7 cut(s)	11, 16, 144, 446, 581, 584, 1127
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	817, 1264
BseYI	CCCAGC	1 cut(s)	1199
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	8, 286, 437
BshNI	GGYRCC	2 cut(s)	559, 1136
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	7 cut(s)	380, 391, 413, 428, 453, 563, 985
BslFI	GGGAC	3 cut(s)	305, 410, 1101
BslI	CCNNNNNNNGG	4 cut(s)	281, 343, 433, 661
BsmFI	GGGAC	3 cut(s)	305, 410, 1101
BsnI	GGCC	3 cut(s)	8, 286, 437
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	369, 1024
Bsp1407I	TGTACA	1 cut(s)	1078
Bsp143I	GATC	5 cut(s)	98, 183, 484, 519, 1282
BspACI	CCGC	6 cut(s)	5, 94, 272, 275, 527, 852
BspANI	GGCC	3 cut(s)	8, 286, 437
BspCNI	CTCAG	2 cut(s)	41, 793
BspLI	GGNNCC	7 cut(s)	335, 425, 426, 561, 582, 1138, 1239
BspMAI	CTGCAG	2 cut(s)	835, 1282
BspMI	ACCTGC	1 cut(s)	1128
BspPI	GGATC	3 cut(s)	93, 492, 527
BspT107I	GGYRCC	2 cut(s)	559, 1136
BspTI	CTTAAG	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	1078
BsrI	ACTGG	1 cut(s)	1250
BssECI	CCNNGG	2 cut(s)	287, 438
BssMI	GATC	5 cut(s)	98, 183, 484, 519, 1282
BssNI	GRCGYC	1 cut(s)	723
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	2 cut(s)	938, 1242
Bst4CI	ACNGT	3 cut(s)	694, 1000, 1263
Bst6I	CTCTTC	2 cut(s)	336, 509
BstACI	GRCGYC	1 cut(s)	723
BstAFI	CTTAAG	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstAUI	TGTACA	1 cut(s)	1078
BstBAI	YACGTR	2 cut(s)	364, 1084
BstC8I	GCNNGC	3 cut(s)	34, 880, 1161
BstDEI	CTNAG	4 cut(s)	28, 86, 801, 959
BstF5I	GGATG	2 cut(s)	70, 535
BstHHI	GCGC	2 cut(s)	809, 936
BstKTI	GATC	5 cut(s)	101, 186, 487, 522, 1285
BstMBI	GATC	5 cut(s)	98, 183, 484, 519, 1282
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 283, 797, 806, 821, 830, 836, 947, 1165
BstNI	CCWGG	2 cut(s)	938, 1242
BstSCI	CCNGG	4 cut(s)	390, 426, 936, 1240
BstSFI	CTRYAG	2 cut(s)	831, 1278
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	817, 1264
BstV2I	GAAGAC	1 cut(s)	1179
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	8, 286, 437
BtsCI	GGATG	2 cut(s)	70, 535
BtsI	GCAGTG	2 cut(s)	40, 1022
BtsIMutI	CAGTG	3 cut(s)	40, 996, 1022
BveI	ACCTGC	1 cut(s)	1128
Cac8I	GCNNGC	3 cut(s)	34, 880, 1161
CfoI	GCGC	2 cut(s)	809, 936
Cfr13I	GGNCC	5 cut(s)	7, 284, 333, 424, 1238
CseI	GACGC	2 cut(s)	653, 731
Csp6I	GTAC	3 cut(s)	560, 1079, 1117
CviAII	CATG	4 cut(s)	656, 704, 751, 764
CviQI	GTAC	3 cut(s)	560, 1079, 1117
DdeI	CTNAG	4 cut(s)	28, 86, 801, 959
DpnI	GATC	5 cut(s)	100, 185, 486, 521, 1284
DpnII	GATC	5 cut(s)	98, 183, 484, 519, 1282
Eam1104I	CTCTTC	2 cut(s)	336, 509
EarI	CTCTTC	2 cut(s)	336, 509
EciI	GGCGGA	1 cut(s)	542
Eco47I	GGWCC	3 cut(s)	333, 424, 1238
Eco57I	CTGAAG	1 cut(s)	32
Eco72I	CACGTG	2 cut(s)	364, 1084
Eco88I	CYCGRG	1 cut(s)	288
EcoO109I	RGGNCCY	2 cut(s)	284, 424
EcoRII	CCWGG	2 cut(s)	936, 1240
FaeI	CATG	4 cut(s)	659, 707, 754, 767
FalI	AAGNNNNNCTT	2 cut(s)	1088, 1120
FaqI	GGGAC	3 cut(s)	305, 410, 1101
FatI	CATG	4 cut(s)	655, 703, 750, 763
FauNDI	CATATG	1 cut(s)	1223
Fnu4HI	GCNGC	4 cut(s)	6, 275, 831, 1278
FokI	GGATG	2 cut(s)	57, 542
Fsp4HI	GCNGC	4 cut(s)	6, 275, 831, 1278
FspBI	CTAG	1 cut(s)	992
GlaI	GCGC	2 cut(s)	808, 935
GluI	GCNGC	4 cut(s)	6, 275, 831, 1278
GsaI	CCCAGC	1 cut(s)	1203
GsuI	CTGGAG	1 cut(s)	1038
HaeIII	GGCC	3 cut(s)	8, 286, 437
HapII	CCGG	7 cut(s)	380, 391, 413, 428, 453, 563, 985
HgaI	GACGC	2 cut(s)	653, 731
HhaI	GCGC	2 cut(s)	809, 936
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	4 cut(s)	659, 707, 754, 767
Hin6I	GCGC	2 cut(s)	807, 934
HinP1I	GCGC	2 cut(s)	807, 934
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	2 cut(s)	14, 1102
HinfI	GANTC	3 cut(s)	113, 310, 955
HpaII	CCGG	7 cut(s)	380, 391, 413, 428, 453, 563, 985
HphI	GGTGA	2 cut(s)	258, 297
Hpy166II	GTNNAC	3 cut(s)	333, 901, 1081
Hpy188I	TCNGA	3 cut(s)	112, 118, 328
Hpy188III	TCNNGA	4 cut(s)	290, 314, 488, 1017
Hpy8I	GTNNAC	3 cut(s)	333, 901, 1081
HpyAV	CCTTC	5 cut(s)	475, 537, 607, 769, 1225
HpyCH4III	ACNGT	3 cut(s)	694, 1000, 1263
HpyCH4IV	ACGT	4 cut(s)	363, 593, 603, 1083
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 283, 797, 806, 821, 830, 836, 947, 1165
HpyF3I	CTNAG	4 cut(s)	28, 86, 801, 959
HpySE526I	ACGT	4 cut(s)	363, 593, 603, 1083
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	4 cut(s)	659, 707, 754, 767
HspAI	GCGC	2 cut(s)	807, 934
KflI	GGGWCCC	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	563
Kzo9I	GATC	5 cut(s)	98, 183, 484, 519, 1282
LmnI	GCTCC	6 cut(s)	113, 329, 409, 455, 836, 1019
Lsp1109I	GCAGC	2 cut(s)	817, 1264
LweI	GCATC	2 cut(s)	802, 966
MaeI	CTAG	1 cut(s)	992
MaeII	ACGT	4 cut(s)	363, 593, 603, 1083
MaeIII	GTNAC	3 cut(s)	38, 746, 1000
MalI	GATC	5 cut(s)	100, 185, 486, 521, 1284
MboI	GATC	5 cut(s)	98, 183, 484, 519, 1282
MboII	GAAGA	7 cut(s)	59, 353, 428, 523, 526, 622, 1179
MfeI	CAATTG	2 cut(s)	710, 1074
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	369, 1024
MluCI	AATT	5 cut(s)	648, 680, 710, 873, 1074
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	4 cut(s)	356, 600, 1178, 1209
MslI	CAYNNNNRTG	1 cut(s)	768
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	7 cut(s)	380, 391, 413, 428, 453, 563, 985
MspR9I	CCNGG	4 cut(s)	392, 428, 938, 1242
MunI	CAATTG	2 cut(s)	710, 1074
MvaI	CCWGG	2 cut(s)	938, 1242
MwoI	GCNNNNNNNGC	9 cut(s)	42, 283, 797, 806, 821, 830, 836, 947, 1165
NciI	CCSGG	2 cut(s)	392, 428
NdeI	CATATG	1 cut(s)	1223
NdeII	GATC	5 cut(s)	98, 183, 484, 519, 1282
NlaIII	CATG	4 cut(s)	659, 707, 754, 767
NlaIV	GGNNCC	7 cut(s)	335, 425, 426, 561, 582, 1138, 1239
NmeAIII	GCCGAG	2 cut(s)	303, 463
NmuCI	GTSAC	2 cut(s)	38, 1000
PfeI	GAWTC	2 cut(s)	113, 955
PflFI	GACNNNGTC	1 cut(s)	1041
PfoI	TCCNGGA	2 cut(s)	426, 1240
PkrI	GCNGC	4 cut(s)	7, 276, 832, 1279
Ple19I	CGATCG	1 cut(s)	186
PleI	GAGTC	1 cut(s)	318
PmaCI	CACGTG	2 cut(s)	364, 1084
PmlI	CACGTG	2 cut(s)	364, 1084
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	2 cut(s)	364, 1084
PpuMI	RGGWCCY	1 cut(s)	424
Psp1406I	AACGTT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	936, 1240
PspCI	CACGTG	2 cut(s)	364, 1084
PspFI	CCCAGC	1 cut(s)	1199
PspGI	CCWGG	2 cut(s)	936, 1240
PspN4I	GGNNCC	7 cut(s)	335, 425, 426, 561, 582, 1138, 1239
PspPI	GGNCC	5 cut(s)	7, 284, 333, 424, 1238
PspPPI	RGGWCCY	1 cut(s)	424
PstI	CTGCAG	2 cut(s)	835, 1282
PsuI	RGATCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	1041
PvuI	CGATCG	1 cut(s)	186
RsaI	GTAC	3 cut(s)	561, 1080, 1118
RsaNI	GTAC	3 cut(s)	560, 1079, 1117
RseI	CAYNNNNRTG	1 cut(s)	768
SaqAI	TTAA	4 cut(s)	356, 600, 1178, 1209
SatI	GCNGC	4 cut(s)	6, 275, 831, 1278
Sau3AI	GATC	5 cut(s)	98, 183, 484, 519, 1282
Sau96I	GGNCC	5 cut(s)	7, 284, 333, 424, 1238
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	4 cut(s)	392, 428, 938, 1242
SduI	GDGCHC	2 cut(s)	369, 1024
SfaNI	GCATC	2 cut(s)	802, 966
SfcI	CTRYAG	2 cut(s)	831, 1278
SinI	GGWCC	3 cut(s)	333, 424, 1238
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	3 cut(s)	206, 355, 1304
SmoI	CTYRAG	3 cut(s)	206, 355, 1304
Sse9I	AATT	5 cut(s)	648, 680, 710, 873, 1074
SsiI	CCGC	6 cut(s)	5, 94, 272, 275, 527, 852
SspMI	CTAG	1 cut(s)	992
StyD4I	CCNGG	4 cut(s)	390, 426, 936, 1240
TaaI	ACNGT	3 cut(s)	694, 1000, 1263
TaiI	ACGT	4 cut(s)	366, 596, 606, 1086
TaqI	TCGA	4 cut(s)	169, 186, 522, 535
TasI	AATT	5 cut(s)	648, 680, 710, 873, 1074
TatI	WGTACW	1 cut(s)	1078
TauI	GCSGC	2 cut(s)	8, 277
TfiI	GAWTC	2 cut(s)	113, 955
Tru1I	TTAA	4 cut(s)	356, 600, 1178, 1209
Tru9I	TTAA	4 cut(s)	356, 600, 1178, 1209
TscAI	CASTG	3 cut(s)	47, 1003, 1029
TseFI	GTSAC	2 cut(s)	38, 1000
TseI	GCWGC	2 cut(s)	830, 1277
Tsp45I	GTSAC	2 cut(s)	38, 1000
TspDTI	ATGAA	4 cut(s)	59, 702, 834, 936
TspGWI	ACGGA	2 cut(s)	166, 396
TspRI	CASTG	3 cut(s)	47, 1003, 1029
Tth111I	GACNNNGTC	1 cut(s)	1041
Vha464I	CTTAAG	1 cut(s)	355
VpaK11BI	GGWCC	3 cut(s)	333, 424, 1238
XapI	RAATTY	1 cut(s)	680
XspI	CTAG	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.