RLG00000019128

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010038
Physical Location & Seq
Forward (+)
46977032 .. 46982043
5012 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019128

Sequence Viewer

Length: 1206 bp
ATGGCAGCCCTGAAGCTCCTCTTCTCCTCGGCTCGCCGTCACTGCTCCGATCTCCACCCGTCTCCATTTCTAAGGTCCCTCACCTCCCAATCAGATCAAATTCCCTCTCCTCCCGAACCCCTTAAACCCCAGCCCGCTCCGATCCAACCCGTCTCCTACGCTCCCAAACCCAAACAACACTCCTCCTCACCCGACCCGGACCCGGCTCCGCAATCAGCACAAACACAAACGCCGCCACCGTCGCACGCGCCTCCTCACGACACTCCCGACTCGCCGTGGACCCGAGAAGACGCCCGGTTCGTGAAGGACGGGCCTTCCATAACCCCGGTGTCGTACCCGGCCCGAGTGGCTCCGTTGCCGGAAGATAAGCCCTCGGAGGAAGGCGGCGACGCGAGGCAGGATGAGCTGGAGAAGGAGAAGCAGAGGATCGAGCAGTCGAGAAGGAGGGTTTTTAGGGTAGAGGAGAATGTGGCGGTTCCTTTCCCCACGTTTCTTAAGGTGGAGAAGAAGGAAAGGAAGCCCATTCTTGATTTGATGGAAGCAATTCGACAAGTCAAGGCTACTGCCAAGTGCAACTTTGATGAAACCGTTGAAGCTCACGTGCAATTGGGTATTGATGCCAAGCGAAATGCAGTTCGTGGCAACATGACCTTGCCCCATGGTAGCGGAAAGGTAGTCAGGGTTGCTTTCTTTGCTGAAGGTGTAGATGCAGATGAAGCTAGAGCTGCTGGAGCAGATATTGTTGGCGGTGTTGACCTTGTGGAGGAAATTGCAAGCAGTCGTAAACTCAACGTTGACAAGTGTTTCGCAACAAATGAAATGGTTATGCGTCTAGCGAAGATAGCAAGGATTCTTAGAGAGCGTGGTTTAATGCCTGACCGAAAACTAGGTACTGTGACTAATGACATTGCTGGGGCACTACAAAAAGTAAGACAAGGTCATATTGAGTATAAAATGGACAGAACATCAATAGTTCATGTTGGGCTCGGAAAGGTAAGCTTTACAGAGGAGTATCTGCGTGAGAATGTTGGTGCATTTATGAGTTCTCTTTTGCTGGCAAAGCCTACAGGTTTAAAAAAGTCTTCCAAATATGCTGGGTATATCAACTCTTTCCACATATGTAGCACAATGGGCTCAGGATTTCCAGTTTCAATACAGTCATTATCCAAAGCTGCAGATAACTACAATAAAATGCACTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L1

Protein Analysis

402

Amino Acids

44.19

Weight (kDa)

9.15

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 185 - 378 2.1e-45 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 2 cut(s) 248, 392
AciI CCGC 7 cut(s) 135, 209, 233, 384, 473, 666, 747
AclI AACGTT 1 cut(s) 792
AclWI GGATC 2 cut(s) 136, 434
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 32, 717
AcvI CACGTG 1 cut(s) 601
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 335, 892
AfiI CCNNNNNNNGG 2 cut(s) 202, 763
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 3 cut(s) 593, 1152, 1201
AluBI AGCT 7 cut(s) 16, 406, 596, 719, 725, 999, 1172
AluI AGCT 7 cut(s) 16, 406, 596, 719, 725, 999, 1172
Alw26I GTCTC 2 cut(s) 66, 157
AlwI GGATC 2 cut(s) 136, 434
Ama87I CYCGRG 2 cut(s) 282, 342
AoxI GGCC 2 cut(s) 311, 339
ApeKI GCWGC 3 cut(s) 5, 725, 1172
ApoI RAATTY 1 cut(s) 99
ArsI GACNNNNNNTTYG 4 cut(s) 281, 313, 788, 820
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 5 cut(s) 75, 199, 279, 311, 340
AsuC2I CCSGG 5 cut(s) 197, 203, 295, 326, 338
AsuHPI GGTGA 2 cut(s) 73, 180
AvaI CYCGRG 2 cut(s) 282, 342
AvaII GGWCC 3 cut(s) 75, 199, 279
BaeGI GKGCMC 1 cut(s) 919
BanII GRGCYC 2 cut(s) 987, 1136
BbrPI CACGTG 1 cut(s) 601
BbsI GAAGAC 2 cut(s) 294, 1074
BbvI GCAGC 3 cut(s) 17, 712, 1159
BccI CCATC 1 cut(s) 529
BceAI ACGGC 2 cut(s) 21, 259
BcnI CCSGG 5 cut(s) 197, 203, 295, 326, 338
BcoDI GTCTC 2 cut(s) 66, 157
BfaI CTAG 3 cut(s) 720, 833, 887
BfmI CTRYAG 2 cut(s) 1065, 1173
BfrI CTTAAG 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 5 cut(s) 6, 233, 385, 726, 1173
BlsI GCNGC 5 cut(s) 7, 234, 386, 727, 1174
Bme1390I CCNGG 5 cut(s) 197, 203, 295, 326, 338
Bme18I GGWCC 3 cut(s) 75, 199, 279
BmeT110I CYCGRG 2 cut(s) 282, 342
BmgT120I GGNCC 5 cut(s) 75, 199, 279, 311, 340
BmiI GGNNCC 6 cut(s) 77, 201, 207, 281, 351, 477
BmrFI CCNGG 5 cut(s) 197, 203, 295, 326, 338
BmsI GCATC 2 cut(s) 607, 697
BpiI GAAGAC 2 cut(s) 294, 1074
BpmI CTGGAG 2 cut(s) 428, 750
Bpu10I CCTNAGC 1 cut(s) 1135
BpuMI CCSGG 5 cut(s) 197, 203, 295, 326, 338
BsaAI YACGTR 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 5 cut(s) 27, 275, 324, 372, 658
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 763
Bse1I ACTGG 1 cut(s) 1145
Bse3DI GCAATG 1 cut(s) 906
BseDI CCNNGG 5 cut(s) 27, 275, 324, 372, 658
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 202, 763
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 1 cut(s) 1149
BseNI ACTGG 1 cut(s) 1145
BseRI GAGGAG 8 cut(s) 8, 16, 99, 172, 175, 243, 476, 1022
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 3 cut(s) 17, 712, 1159
BseYI CCCAGC 3 cut(s) 129, 911, 1094
Bsh1236I CGCG 2 cut(s) 248, 392
BshFI GGCC 2 cut(s) 313, 341
BsiHKCI CYCGRG 2 cut(s) 282, 342
BsiSI CCGG 6 cut(s) 197, 203, 295, 326, 338, 359
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 202, 763
BsmAI GTCTC 2 cut(s) 66, 157
BsmBI CGTCTC 2 cut(s) 66, 157
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 2 cut(s) 313, 341
BsoBI CYCGRG 2 cut(s) 282, 342
Bsp1286I GDGCHC 3 cut(s) 919, 987, 1136
Bsp143I GATC 4 cut(s) 49, 94, 141, 426
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 7 cut(s) 135, 209, 233, 384, 473, 666, 747
BspANI GGCC 2 cut(s) 313, 341
BspCNI CTCAG 1 cut(s) 1148
BspFNI CGCG 2 cut(s) 248, 392
BspLI GGNNCC 6 cut(s) 77, 201, 207, 281, 351, 477
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 2 cut(s) 136, 434
BspTI CTTAAG 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 1 cut(s) 1145
BssECI CCNNGG 5 cut(s) 27, 275, 324, 372, 658
BssMI GATC 4 cut(s) 49, 94, 141, 426
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 240, 589, 895, 1158
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 291
BstAFI CTTAAG 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 5 cut(s) 34, 135, 246, 775, 1056
BstDEI CTNAG 3 cut(s) 71, 854, 1135
BstDSI CCRYGG 2 cut(s) 275, 658
BstENI CCTNNNNNAGG 1 cut(s) 761
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 248, 392
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 4 cut(s) 52, 97, 144, 429
BstMAI GTCTC 2 cut(s) 66, 157
BstMBI GATC 4 cut(s) 49, 94, 141, 426
BstSCI CCNGG 5 cut(s) 195, 201, 293, 324, 336
BstSFI CTRYAG 2 cut(s) 1065, 1173
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 2 cut(s) 248, 392
BstV1I GCAGC 3 cut(s) 17, 712, 1159
BstV2I GAAGAC 2 cut(s) 294, 1074
BsuRI GGCC 2 cut(s) 313, 341
BtgI CCRYGG 2 cut(s) 275, 658
BtsCI GGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 5 cut(s) 34, 135, 246, 775, 1056
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 5 cut(s) 75, 199, 279, 311, 340
CseI GACGC 3 cut(s) 299, 398, 818
Csp6I GTAC 2 cut(s) 334, 891
CviAII CATG 3 cut(s) 646, 659, 977
CviQI GTAC 2 cut(s) 334, 891
DdeI CTNAG 3 cut(s) 71, 854, 1135
DpnI GATC 4 cut(s) 51, 96, 143, 428
DpnII GATC 4 cut(s) 49, 94, 141, 426
DraI TTTAAA 1 cut(s) 1074
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 2 cut(s) 987, 1136
Eco47I GGWCC 3 cut(s) 75, 199, 279
Eco57I CTGAAG 2 cut(s) 32, 717
Eco72I CACGTG 1 cut(s) 601
Eco88I CYCGRG 2 cut(s) 282, 342
EcoNI CCTNNNNNAGG 1 cut(s) 761
EcoO109I RGGNCCY 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 2 cut(s) 987, 1136
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 2 cut(s) 66, 157
FaeI CATG 3 cut(s) 649, 662, 980
FalI AAGNNNNNCTT 5 cut(s) 37, 560, 592, 983, 1015
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 645, 658, 976
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 1118
Fnu4HI GCNGC 5 cut(s) 6, 233, 385, 726, 1173
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 2 cut(s) 987, 1136
Fsp4HI GCNGC 5 cut(s) 6, 233, 385, 726, 1173
FspBI CTAG 3 cut(s) 720, 833, 887
GlaI GCGC 1 cut(s) 249
GluI GCNGC 5 cut(s) 6, 233, 385, 726, 1173
GsaI CCCAGC 3 cut(s) 133, 915, 1098
GsuI CTGGAG 2 cut(s) 428, 750
HaeIII GGCC 2 cut(s) 313, 341
HapII CCGG 6 cut(s) 197, 203, 295, 326, 338, 359
HgaI GACGC 3 cut(s) 299, 398, 818
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 3 cut(s) 649, 662, 980
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 2 cut(s) 754, 796
HindII GTYRAC 2 cut(s) 754, 796
HindIII AAGCTT 1 cut(s) 997
HinfI GANTC 2 cut(s) 269, 850
HpaII CCGG 6 cut(s) 197, 203, 295, 326, 338, 359
HphI GGTGA 2 cut(s) 73, 180
Hpy166II GTNNAC 4 cut(s) 279, 754, 785, 796
Hpy188I TCNGA 5 cut(s) 49, 94, 141, 376, 989
Hpy188III TCNNGA 7 cut(s) 113, 257, 266, 301, 438, 527, 1137
Hpy8I GTNNAC 4 cut(s) 279, 754, 785, 796
Hpy99I CGWCG 2 cut(s) 244, 392
HpyAV CCTTC 7 cut(s) 298, 324, 374, 406, 435, 502, 692
HpyCH4III ACNGT 4 cut(s) 240, 589, 895, 1158
HpyCH4IV ACGT 3 cut(s) 488, 600, 792
HpyCH4V TGCA 8 cut(s) 573, 604, 632, 710, 773, 1034, 1175, 1195
HpyF3I CTNAG 3 cut(s) 71, 854, 1135
HpySE526I ACGT 3 cut(s) 488, 600, 792
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 3 cut(s) 649, 662, 980
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 4 cut(s) 49, 94, 141, 426
LmnI GCTCC 7 cut(s) 21, 50, 142, 166, 211, 355, 731
Lsp1109I GCAGC 3 cut(s) 17, 712, 1159
LweI GCATC 2 cut(s) 607, 697
MaeI CTAG 3 cut(s) 720, 833, 887
MaeII ACGT 3 cut(s) 488, 600, 792
MaeIII GTNAC 2 cut(s) 38, 895
MalI GATC 4 cut(s) 51, 96, 143, 428
MbiI CCGCTC 1 cut(s) 137
MboI GATC 4 cut(s) 49, 94, 141, 426
MboII GAAGA 6 cut(s) 13, 299, 374, 517, 850, 1074
MfeI CAATTG 1 cut(s) 605
MhlI GDGCHC 3 cut(s) 919, 987, 1136
MluCI AATT 4 cut(s) 99, 543, 605, 768
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 4 cut(s) 123, 495, 869, 1073
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 6 cut(s) 197, 203, 295, 326, 338, 359
MspR9I CCNGG 5 cut(s) 197, 203, 295, 326, 338
MunI CAATTG 1 cut(s) 605
MvnI CGCG 2 cut(s) 248, 392
NciI CCSGG 5 cut(s) 197, 203, 295, 326, 338
NcoI CCATGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 1118
NdeII GATC 4 cut(s) 49, 94, 141, 426
NlaIII CATG 3 cut(s) 649, 662, 980
NlaIV GGNNCC 6 cut(s) 77, 201, 207, 281, 351, 477
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 38, 895
PcsI WCGNNNNNNNCGW 3 cut(s) 236, 264, 297
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 850
PflFI GACNNNGTC 1 cut(s) 936
PkrI GCNGC 5 cut(s) 7, 234, 386, 727, 1174
PleI GAGTC 1 cut(s) 263
PmaCI CACGTG 1 cut(s) 601
PmlI CACGTG 1 cut(s) 601
PpsI GAGTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 75
Psp1406I AACGTT 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 75
PspCI CACGTG 1 cut(s) 601
PspFI CCCAGC 3 cut(s) 129, 911, 1094
PspN4I GGNNCC 6 cut(s) 77, 201, 207, 281, 351, 477
PspPI GGNCC 5 cut(s) 75, 199, 279, 311, 340
PspPPI RGGWCCY 1 cut(s) 75
PstI CTGCAG 1 cut(s) 1177
PsyI GACNNNGTC 1 cut(s) 936
RsaI GTAC 2 cut(s) 335, 892
RsaNI GTAC 2 cut(s) 334, 891
SaqAI TTAA 4 cut(s) 123, 495, 869, 1073
SatI GCNGC 5 cut(s) 6, 233, 385, 726, 1173
Sau3AI GATC 4 cut(s) 49, 94, 141, 426
Sau96I GGNCC 5 cut(s) 75, 199, 279, 311, 340
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 5 cut(s) 197, 203, 295, 326, 338
SduI GDGCHC 3 cut(s) 919, 987, 1136
SfaNI GCATC 2 cut(s) 607, 697
SfcI CTRYAG 2 cut(s) 1065, 1173
SinI GGWCC 3 cut(s) 75, 199, 279
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 4 cut(s) 99, 543, 605, 768
SsiI CCGC 7 cut(s) 135, 209, 233, 384, 473, 666, 747
SspMI CTAG 3 cut(s) 720, 833, 887
StyD4I CCNGG 5 cut(s) 195, 201, 293, 324, 336
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 240, 589, 895, 1158
TaiI ACGT 3 cut(s) 491, 603, 795
TaqI TCGA 3 cut(s) 429, 437, 547
TaqII GACCGA 1 cut(s) 894
TasI AATT 4 cut(s) 99, 543, 605, 768
TauI GCSGC 2 cut(s) 235, 387
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 4 cut(s) 123, 495, 869, 1073
Tru9I TTAA 4 cut(s) 123, 495, 869, 1073
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 2 cut(s) 38, 895
TseI GCWGC 3 cut(s) 5, 725, 1172
Tsp45I GTSAC 2 cut(s) 38, 895
TspDTI ATGAA 4 cut(s) 597, 729, 831, 965
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 936
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 3 cut(s) 75, 199, 279
XagI CCTNNNNNAGG 1 cut(s) 761
XapI RAATTY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 720, 833, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.