Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010460.1

Orthogroup ID

OG0010038

Physical Location & Seq

Genomic Coordinates Forward (+)

44711 .. 48070

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010460.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atggcagccctgaagctcctcttctcctcggctcgccgtcactgctcccatctccacccgtctccatttctaaggtccctcacctcccaatcagatcaaattccctctcctcccgaaccccttaaaccccaacccgctccgatccaacccgtctcctacgctcccaaacccaaacaacactcctcctcacccgacccggatccggacccggctccgcaatcagcacaaacacaaccgccgccaccgtcgcacgcgcctcctcacgactcgccgtggacccgagaagacgcccggttcgtgaaggacgggccttccataaccccggtgtcgtacccggcccgagtggctccgttgccggaagataaggtctcggaggaaggcggcgacgcgaggcagggtgagctggagaaggagaagcagaggatcgagcagtcgagaaggagggtttttagggtagaggagaatgtggtggttcctttccccacgtttcttaaggtggagaagaaggaaaggaagcccattcttgatttgatggaagcaattcgacaagtcaaggctactgccaagtgcaactttgatgaaactgtggaagctcacgtgcaattgggtattgatgccaagcgaaatgcagttcgtggcaacatgaccttgccccatggtagcggaaaggtagtcagggttgctttctttgctgaaggtgcagatgcagatgaagctagagctgctggagcagatattgttggcggtgttgaccttgtggaggaaattgcaagtaatatactaacccttgctgctgctgatctattttcatgcagtcgtaaactcaacattgacaagtgttttgcaacaaatgaaatggttatgcgtctagcgaagatagcaaggattcttagagagcgtggtttaatgcctgaccgaaaactaggtactgtgactaacgacattgctggggcactacaaaaagtaagacaaggtcatattgagtataaaatggacagaacatcaatagttcatgttgggctcggaaaggtaagctttacagaggagtatctgcgtgaaaatgttggtgcatttatgagttctcttttgctggcaaagcctacgggtttaaaaaagtgtaagtggcataaagtactcttgttctttctatacattccctgtgggcttgataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

391

Amino Acids

43.2

Weight (kDa)

9.09

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42710
fragaria_vesca	FvH4_6g27601 FvH4_6g27601
malus_domestica	MD11G1004300.v1.1 MD17G1265500.v1.1
prunus_persica	Prupe.3G115600_v2.0.a1 Prupe.3G115600_v2.0.a1
pyrus_communis	pycom09g15440 pycom17g26520
rosa_chinensis	RchiOBHm_Chr2g0130111
rosa_laevigata	RLG00000019128
rosa_multiflora	Rmu_co8049210.1_g000001 Rmu_sc0000516.1_g000074 Rmu_sc0010460.1_g000013
rosa_roxburghii	Rroxscaffold_2G00114080
rosa_rugosa	Rorug02G0291100
rosa_samantha	Rh2AG342900 Rh2BG350600 Rh2CG330000 Rh2DG369100
rosa_wichuraiana	Rw2G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	2 cut(s)	254, 389
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	7 cut(s)	135, 215, 236, 239, 381, 663, 744
AclWI	GGATC	4 cut(s)	136, 194, 207, 431
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	32, 714
AcvI	CACGTG	1 cut(s)	598
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	3 cut(s)	332, 928, 1134
AfiI	CCNNNNNNNGG	2 cut(s)	202, 760
AflII	CTTAAG	1 cut(s)	491
AluBI	AGCT	6 cut(s)	16, 403, 593, 716, 722, 1035
AluI	AGCT	6 cut(s)	16, 403, 593, 716, 722, 1035
Alw26I	GTCTC	3 cut(s)	66, 157, 373
AlwI	GGATC	4 cut(s)	136, 194, 207, 431
Ama87I	CYCGRG	2 cut(s)	279, 339
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	2 cut(s)	308, 336
ApeKI	GCWGC	4 cut(s)	5, 722, 791, 794
ApoI	RAATTY	1 cut(s)	99
ArsI	GACNNNNNNTTYG	4 cut(s)	278, 310, 824, 856
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	5 cut(s)	75, 205, 276, 308, 337
AsuC2I	CCSGG	5 cut(s)	197, 209, 292, 323, 335
AsuHPI	GGTGA	3 cut(s)	73, 180, 410
AvaI	CYCGRG	2 cut(s)	279, 339
AvaII	GGWCC	3 cut(s)	75, 205, 276
BaeGI	GKGCMC	1 cut(s)	955
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	1023
BbrPI	CACGTG	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	17, 709, 778, 781
BccI	CCATC	2 cut(s)	57, 526
BceAI	ACGGC	2 cut(s)	21, 256
BcnI	CCSGG	5 cut(s)	197, 209, 292, 323, 335
BcoDI	GTCTC	3 cut(s)	66, 157, 373
BfaI	CTAG	3 cut(s)	717, 869, 923
BfrI	CTTAAG	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	344
BisI	GCNGC	6 cut(s)	6, 239, 382, 723, 792, 795
BlsI	GCNGC	6 cut(s)	7, 240, 383, 724, 793, 796
BmcAI	AGTACT	1 cut(s)	1134
Bme1390I	CCNGG	5 cut(s)	197, 209, 292, 323, 335
Bme18I	GGWCC	3 cut(s)	75, 205, 276
BmeT110I	CYCGRG	2 cut(s)	279, 339
BmgT120I	GGNCC	5 cut(s)	75, 205, 276, 308, 337
BmiI	GGNNCC	7 cut(s)	77, 201, 207, 213, 278, 348, 474
BmrFI	CCNGG	5 cut(s)	197, 209, 292, 323, 335
BmsI	GCATC	2 cut(s)	604, 694
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	425, 747
BpuMI	CCSGG	5 cut(s)	197, 209, 292, 323, 335
BsaAI	YACGTR	1 cut(s)	598
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	4 cut(s)	27, 272, 321, 655
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 760
Bse3DI	GCAATG	1 cut(s)	942
BseAI	TCCGGA	1 cut(s)	202
BseDI	CCNNGG	4 cut(s)	27, 272, 321, 655
BseLI	CCNNNNNNNGG	2 cut(s)	202, 760
BseMI	GCAATG	1 cut(s)	942
BseRI	GAGGAG	8 cut(s)	8, 16, 99, 172, 175, 249, 473, 1058
BseSI	GKGCMC	1 cut(s)	955
BseXI	GCAGC	4 cut(s)	17, 709, 778, 781
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	2 cut(s)	254, 389
BshFI	GGCC	2 cut(s)	310, 338
BsiHKCI	CYCGRG	2 cut(s)	279, 339
BsiSI	CCGG	7 cut(s)	197, 203, 209, 292, 323, 335, 356
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	202, 760
BsmAI	GTCTC	3 cut(s)	66, 157, 373
BsmBI	CGTCTC	2 cut(s)	66, 157
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	310, 338
Bso31I	GGTCTC	1 cut(s)	373
BsoBI	CYCGRG	2 cut(s)	279, 339
Bsp1286I	GDGCHC	2 cut(s)	955, 1023
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	94, 141, 199, 423, 799
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	7 cut(s)	135, 215, 236, 239, 381, 663, 744
BspANI	GGCC	2 cut(s)	310, 338
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	254, 389
BspLI	GGNNCC	7 cut(s)	77, 201, 207, 213, 278, 348, 474
BspPI	GGATC	4 cut(s)	136, 194, 207, 431
BspTI	CTTAAG	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	942
BssECI	CCNNGG	4 cut(s)	27, 272, 321, 655
BssMI	GATC	5 cut(s)	94, 141, 199, 423, 799
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	655
Bst4CI	ACNGT	3 cut(s)	246, 586, 931
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	34, 252, 1092
BstDEI	CTNAG	2 cut(s)	71, 890
BstDSI	CCRYGG	2 cut(s)	272, 655
BstENI	CCTNNNNNAGG	1 cut(s)	758
BstFNI	CGCG	2 cut(s)	254, 389
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	5 cut(s)	97, 144, 202, 426, 802
BstMAI	GTCTC	3 cut(s)	66, 157, 373
BstMBI	GATC	5 cut(s)	94, 141, 199, 423, 799
BstSCI	CCNGG	5 cut(s)	195, 207, 290, 321, 333
BstSLI	GKGCMC	1 cut(s)	955
BstUI	CGCG	2 cut(s)	254, 389
BstV1I	GCAGC	4 cut(s)	17, 709, 778, 781
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	310, 338
BtgI	CCRYGG	2 cut(s)	272, 655
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	34, 252, 1092
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	5 cut(s)	75, 205, 276, 308, 337
CseI	GACGC	3 cut(s)	296, 395, 854
Csp6I	GTAC	3 cut(s)	331, 927, 1133
CviAII	CATG	4 cut(s)	643, 656, 810, 1013
CviQI	GTAC	3 cut(s)	331, 927, 1133
DdeI	CTNAG	2 cut(s)	71, 890
DpnI	GATC	5 cut(s)	96, 143, 201, 425, 801
DpnII	GATC	5 cut(s)	94, 141, 199, 423, 799
DraI	TTTAAA	1 cut(s)	1110
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	1023
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	3 cut(s)	75, 205, 276
Eco57I	CTGAAG	2 cut(s)	32, 714
Eco72I	CACGTG	1 cut(s)	598
Eco88I	CYCGRG	2 cut(s)	279, 339
EcoNI	CCTNNNNNAGG	1 cut(s)	758
EcoO109I	RGGNCCY	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	1023
ErhI	CCWWGG	1 cut(s)	655
Esp3I	CGTCTC	2 cut(s)	66, 157
FaeI	CATG	4 cut(s)	646, 659, 813, 1016
FalI	AAGNNNNNCTT	5 cut(s)	37, 557, 589, 1019, 1051
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	4 cut(s)	642, 655, 809, 1012
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	6 cut(s)	6, 239, 382, 723, 792, 795
FriOI	GRGCYC	1 cut(s)	1023
Fsp4HI	GCNGC	6 cut(s)	6, 239, 382, 723, 792, 795
FspBI	CTAG	3 cut(s)	717, 869, 923
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	6 cut(s)	6, 239, 382, 723, 792, 795
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	2 cut(s)	425, 747
HaeIII	GGCC	2 cut(s)	310, 338
HapII	CCGG	7 cut(s)	197, 203, 209, 292, 323, 335, 356
HgaI	GACGC	3 cut(s)	296, 395, 854
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	646, 659, 813, 1016
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	1033
HinfI	GANTC	2 cut(s)	266, 886
HpaII	CCGG	7 cut(s)	197, 203, 209, 292, 323, 335, 356
HphI	GGTGA	3 cut(s)	73, 180, 410
Hpy166II	GTNNAC	3 cut(s)	276, 751, 821
Hpy188I	TCNGA	4 cut(s)	94, 141, 373, 1025
Hpy188III	TCNNGA	6 cut(s)	113, 203, 263, 298, 435, 524
Hpy8I	GTNNAC	3 cut(s)	276, 751, 821
Hpy99I	CGWCG	2 cut(s)	250, 389
HpyAV	CCTTC	7 cut(s)	295, 321, 371, 403, 432, 499, 689
HpyCH4III	ACNGT	3 cut(s)	246, 586, 931
HpyCH4IV	ACGT	2 cut(s)	485, 597
HpyCH4V	TGCA	9 cut(s)	570, 601, 629, 701, 707, 770, 813, 845, 1070
HpyF3I	CTNAG	2 cut(s)	71, 890
HpySE526I	ACGT	2 cut(s)	485, 597
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	646, 659, 813, 1016
HspAI	GCGC	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	94, 141, 199, 423, 799
LmnI	GCTCC	7 cut(s)	21, 50, 142, 166, 217, 352, 728
Lsp1109I	GCAGC	4 cut(s)	17, 709, 778, 781
LweI	GCATC	2 cut(s)	604, 694
MaeI	CTAG	3 cut(s)	717, 869, 923
MaeII	ACGT	2 cut(s)	485, 597
MaeIII	GTNAC	2 cut(s)	38, 931
MalI	GATC	5 cut(s)	96, 143, 201, 425, 801
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	5 cut(s)	94, 141, 199, 423, 799
MboII	GAAGA	5 cut(s)	13, 296, 371, 514, 886
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	955, 1023
MluCI	AATT	4 cut(s)	99, 540, 602, 765
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	4 cut(s)	123, 492, 905, 1109
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	7 cut(s)	197, 203, 209, 292, 323, 335, 356
MspR9I	CCNGG	5 cut(s)	197, 209, 292, 323, 335
MunI	CAATTG	1 cut(s)	602
MvnI	CGCG	2 cut(s)	254, 389
NciI	CCSGG	5 cut(s)	197, 209, 292, 323, 335
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	5 cut(s)	94, 141, 199, 423, 799
NlaIII	CATG	4 cut(s)	646, 659, 813, 1016
NlaIV	GGNNCC	7 cut(s)	77, 201, 207, 213, 278, 348, 474
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	38, 931
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	886
PflFI	GACNNNGTC	1 cut(s)	972
PkrI	GCNGC	6 cut(s)	7, 240, 383, 724, 793, 796
PleI	GAGTC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	598
PmlI	CACGTG	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	598
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	947
PspN4I	GGNNCC	7 cut(s)	77, 201, 207, 213, 278, 348, 474
PspPI	GGNCC	5 cut(s)	75, 205, 276, 308, 337
PspPPI	RGGWCCY	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	972
RsaI	GTAC	3 cut(s)	332, 928, 1134
RsaNI	GTAC	3 cut(s)	331, 927, 1133
SaqAI	TTAA	4 cut(s)	123, 492, 905, 1109
SatI	GCNGC	6 cut(s)	6, 239, 382, 723, 792, 795
Sau3AI	GATC	5 cut(s)	94, 141, 199, 423, 799
Sau96I	GGNCC	5 cut(s)	75, 205, 276, 308, 337
ScaI	AGTACT	1 cut(s)	1134
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	5 cut(s)	197, 209, 292, 323, 335
SduI	GDGCHC	2 cut(s)	955, 1023
SfaNI	GCATC	2 cut(s)	604, 694
SinI	GGWCC	3 cut(s)	75, 205, 276
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	99, 540, 602, 765
SsiI	CCGC	7 cut(s)	135, 215, 236, 239, 381, 663, 744
SspMI	CTAG	3 cut(s)	717, 869, 923
StyD4I	CCNGG	5 cut(s)	195, 207, 290, 321, 333
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	3 cut(s)	246, 586, 931
TaiI	ACGT	2 cut(s)	488, 600
TaqI	TCGA	3 cut(s)	426, 434, 544
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	4 cut(s)	99, 540, 602, 765
TatI	WGTACW	1 cut(s)	1132
TauI	GCSGC	2 cut(s)	241, 384
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	4 cut(s)	123, 492, 905, 1109
Tru9I	TTAA	4 cut(s)	123, 492, 905, 1109
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	38, 931
TseI	GCWGC	4 cut(s)	5, 722, 791, 794
Tsp45I	GTSAC	2 cut(s)	38, 931
TspDTI	ATGAA	5 cut(s)	594, 726, 798, 867, 1001
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	972
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	3 cut(s)	75, 205, 276
XagI	CCTNNNNNAGG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	3 cut(s)	717, 869, 923
ZrmI	AGTACT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.