Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Forward (+)

18855675 .. 18858018

Gene Structure 2344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGCGAAAATTCCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAGCTCCAAGGAAGGAAGCTACTCCAGAATTGCTCGATTTTATCCGAGAATTGCGAAAGGTCGTCACTATTGGAGTCGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAACAGTCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATAAAGATGGGAAATCCATTGGAATTCAGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGGAGTTGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTAAGAGGGGAACATTTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGTCGCAACTGCAGCCAAGAAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAGCTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGACTTCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAATGACTATGAAATCTATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAGTGGCAAAATGCAAGGCTCTGTTCATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

246

Amino Acids

27.76

Weight (kDa)

5.33

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_3	PF08282	11 - 209	1.4e-06	haloacid dehalogenase-like hydrolase
PMM	PF03332	30 - 245	2.1e-116	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AbsI	CCTCGAGG	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	2 cut(s)	5, 493
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	5 cut(s)	12, 252, 304, 365, 431
AcuI	CTGAAG	2 cut(s)	284, 583
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	365, 455
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	6 cut(s)	59, 74, 169, 268, 479, 540
AluI	AGCT	6 cut(s)	59, 74, 169, 268, 479, 540
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	4 cut(s)	166, 268, 313, 411
ApoI	RAATTY	5 cut(s)	12, 252, 304, 365, 431
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	384, 632, 657
AvaI	CYCGRG	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	681
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	4 cut(s)	178, 255, 300, 423
BccI	CCATC	2 cut(s)	230, 466
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	5 cut(s)	6, 167, 269, 314, 412
BlsI	GCNGC	5 cut(s)	7, 168, 270, 315, 413
Bme1390I	CCNGG	2 cut(s)	18, 332
BmeT110I	CYCGRG	1 cut(s)	590
BmrFI	CCNGG	2 cut(s)	18, 332
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	62, 274
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	62, 274
BseGI	GGATG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	153, 201
BseXI	GCAGC	4 cut(s)	178, 255, 300, 423
BsgI	GTGCAG	2 cut(s)	254, 299
BshFI	GGCC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	543
BsmAI	GTCTC	1 cut(s)	273
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	681
BsoBI	CYCGRG	1 cut(s)	590
Bsp143I	GATC	3 cut(s)	24, 140, 145
BspACI	CCGC	2 cut(s)	5, 493
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	2 cut(s)	154, 202
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	62, 274
BssMI	GATC	3 cut(s)	24, 140, 145
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	62, 274
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	47, 181, 709
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	3 cut(s)	149, 162, 210
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	3 cut(s)	27, 143, 148
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	24, 140, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	16, 330
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	4 cut(s)	178, 255, 300, 423
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	607, 714
Cac8I	GCNNGC	1 cut(s)	581
CaiI	CAGNNNCTG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	1 cut(s)	733
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	3 cut(s)	149, 162, 210
DpnI	GATC	3 cut(s)	26, 142, 147
DpnII	GATC	3 cut(s)	24, 140, 145
EaeI	YGGCCR	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	62, 274
Eco32I	GATATC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	284, 583
Eco88I	CYCGRG	1 cut(s)	590
EcoRI	GAATTC	2 cut(s)	252, 365
EcoRII	CCWGG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	62, 274
ErhI	CCWWGG	2 cut(s)	62, 274
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	1 cut(s)	736
FaiI	YATR	7 cut(s)	195, 231, 444, 633, 651, 660, 734
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	5 cut(s)	6, 167, 269, 314, 412
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	5 cut(s)	6, 167, 269, 314, 412
GluI	GCNGC	5 cut(s)	6, 167, 269, 314, 412
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	736
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	3 cut(s)	129, 662, 694
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	3 cut(s)	384, 632, 657
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	7 cut(s)	101, 145, 163, 211, 258, 371, 464
Hpy188III	TCNNGA	4 cut(s)	80, 488, 698, 738
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	4 cut(s)	41, 44, 47, 137
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	3 cut(s)	47, 181, 709
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	7 cut(s)	271, 316, 326, 411, 500, 583, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	3 cut(s)	149, 162, 210
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	736
Kzo9I	GATC	3 cut(s)	24, 140, 145
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	31, 93, 275, 317, 344, 711
Lsp1109I	GCAGC	4 cut(s)	178, 255, 300, 423
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	4 cut(s)	118, 181, 620, 688
MalI	GATC	3 cut(s)	26, 142, 147
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	3 cut(s)	24, 140, 145
MboII	GAAGA	3 cut(s)	431, 541, 607
MfeI	CAATTG	2 cut(s)	522, 675
MflI	RGATCY	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	681
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	2 cut(s)	138, 703
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	4 cut(s)	342, 586, 599, 628
Mox20I	TGGCCA	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	2 cut(s)	345, 507
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	681
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	18, 332
MunI	CAATTG	2 cut(s)	522, 675
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	411
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	24, 140, 145
NlaIII	CATG	1 cut(s)	736
NmuCI	GTSAC	3 cut(s)	118, 181, 620
PaeR7I	CTCGAG	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	5 cut(s)	7, 168, 270, 315, 413
PleI	GAGTC	2 cut(s)	137, 702
PpsI	GAGTC	2 cut(s)	137, 702
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspXI	VCTCGAGB	1 cut(s)	590
PstI	CTGCAG	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	345, 507
SatI	GCNGC	5 cut(s)	6, 167, 269, 314, 412
Sau3AI	GATC	3 cut(s)	24, 140, 145
SchI	GAGTC	2 cut(s)	138, 703
ScrFI	CCNGG	2 cut(s)	18, 332
SfcI	CTRYAG	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	590
SgrDI	CGTCGACG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	290, 590
SmoI	CTYRAG	2 cut(s)	290, 590
SsiI	CCGC	2 cut(s)	5, 493
StyD4I	CCNGG	2 cut(s)	16, 330
StyI	CCWWGG	2 cut(s)	62, 274
TaaI	ACNGT	3 cut(s)	47, 181, 709
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	5 cut(s)	36, 42, 90, 543, 591
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	345, 507
Tru9I	TTAA	2 cut(s)	345, 507
TscAI	CASTG	2 cut(s)	607, 714
TseFI	GTSAC	3 cut(s)	118, 181, 620
TseI	GCWGC	4 cut(s)	166, 268, 313, 411
Tsp45I	GTSAC	3 cut(s)	118, 181, 620
TspDTI	ATGAA	4 cut(s)	444, 666, 675, 721
TspRI	CASTG	2 cut(s)	607, 714
XapI	RAATTY	5 cut(s)	12, 252, 304, 365, 431
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.