Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004159

Physical Location & Seq

Genomic Coordinates Reverse (-)

56788562 .. 56792792

Gene Structure 4231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACGGACAGCCCGTTCGAGTCCCTGACGGAGTCGCTCGACCTTATTTCGCTGGACAGCGCTTCCACTGTTAGCCGGGCTTCGTGCCCGAGCAAATTTTCGTCATGCTATCTGCCAATTACTATTGGGTTTGGATATAATGGATTACAGGATCATATGGAGGAAGCTGAGATCATGCTTGCTGGTGAGTTCTGGCAAGTTATTTGTGAGTATGATTATGTATTTTCTAAGAATGGTCTTGTGGCTCACAAAGATGGGAAGCTCAATGGCACCCAGAGCTTGAAGTCACATCTTGGAGATGATAAGCTCAAGGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGGGGTACATTTATTGAGTTCCGAAGTGGGATGATTAATGTATCACCAATTGGGCGAAACTGTAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGACAAGGTTCACAACGTATGCCCGAAAATGGTTTCTATCCTTTGTGAGAAGTTTGCTCACTTTAACCTGACATTTTCCATAGGAGGACAGATAAGCTTTGATAATGGTGAAGGTCATCATTTCAGAGGAAGATATATCAAAGCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006013 GO:0006082 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009628 GO:0009651 GO:0009987 GO:0015031 GO:0015833 GO:0016051 GO:0016053 GO:0016853 GO:0016866 GO:0016868 GO:0019318 GO:0019538 GO:0019752 GO:0019852 GO:0019853 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0036211 GO:0042364 GO:0042886 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046364 GO:0046394 GO:0046907 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051641 GO:0051649 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMM

Protein Analysis

203

Amino Acids

22.98

Weight (kDa)

5.56

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMM	PF03332	60 - 188	7.9e-58	Eukaryotic phosphomannomutase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0004159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45790
fragaria_vesca	FvH4_7g13630 FvH4_7g13630 FvH4_7g13630
malus_domestica	MD01G1053400.v1.1 MD07G1141700.v1.1
prunus_persica	Prupe.2G162400_v2.0.a1
pyrus_communis	pycom01g07910 pycom07g14070
rosa_chinensis	RchiOBHm_Chr1g0353671 RchiOBHm_Chr1g0364561 RchiOBHm_Chr5g0052881
rosa_laevigata	RLG00000028241 RLG00000028266 RLG00000029501 RLG00000029518
rosa_multiflora	Rmu_sc0000498.1_g000077 Rmu_sc0005947.1_g000024 Rmu_sc0018110.1_g000001 Rmu_ssc0000278.1_g000010
rosa_roxburghii	Rroxscaffold_1G00039210 Rroxscaffold_2G00116190 Rroxscaffold_4G00301750
rosa_rugosa	Rorug01G0236900 Rorug01G0237000
rosa_samantha	Rh1BG219300 Rh1CG231900 Rh1DG107000 Rh1DG246300 Rh6CG080600 Rh6DG076000
rosa_wichuraiana	Rw1G021720 Rw4G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	3 cut(s)	95, 314, 449
AfaI	GTAC	1 cut(s)	373
AfeI	AGCGCT	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	283, 455
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	5 cut(s)	167, 262, 279, 307, 558
AluI	AGCT	5 cut(s)	167, 262, 279, 307, 558
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	61
ApoI	RAATTY	3 cut(s)	95, 314, 449
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	197, 402, 581
AvaI	CYCGRG	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	269
BccI	CCATC	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	7
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	151, 171
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	269
BssMI	GATC	2 cut(s)	151, 171
Bst4CI	ACNGT	2 cut(s)	70, 428
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	168, 228
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	154, 174
BstMBI	GATC	2 cut(s)	151, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	2 cut(s)	105, 175
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	2 cut(s)	168, 228
DpnI	GATC	2 cut(s)	153, 173
DpnII	GATC	2 cut(s)	151, 171
Eco47III	AGCGCT	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	88
FaeI	CATG	2 cut(s)	108, 178
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	2 cut(s)	104, 174
FauNDI	CATATG	1 cut(s)	156
FokI	GGATG	1 cut(s)	409
GlaI	GCGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	63
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	108, 178
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	2 cut(s)	20, 32
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	3 cut(s)	197, 402, 581
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	389, 587
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	70, 428
HpyCH4IV	ACGT	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	168, 228
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	108, 178
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	151, 171
LpnPI	CCDG	8 cut(s)	38, 38, 89, 134, 168, 178, 287, 542
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	153, 173
MboI	GATC	2 cut(s)	151, 171
MboII	GAAGA	1 cut(s)	603
MfeI	CAATTG	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	6 cut(s)	95, 117, 314, 322, 414, 449
MlyI	GAGTC	2 cut(s)	29, 41
MnlI	CCTC	5 cut(s)	154, 360, 430, 539, 581
MseI	TTAA	3 cut(s)	402, 525, 610
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	276
NciI	CCSGG	1 cut(s)	77
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	2 cut(s)	151, 171
NlaIII	CATG	2 cut(s)	108, 178
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	28, 40
PpsI	GAGTC	2 cut(s)	28, 40
PshBI	ATTAAT	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	402, 525, 610
Sau3AI	GATC	2 cut(s)	151, 171
SchI	GAGTC	2 cut(s)	29, 41
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	6 cut(s)	95, 117, 314, 322, 414, 449
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	70, 428
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	18, 39
TasI	AATT	6 cut(s)	95, 117, 314, 322, 414, 449
Tru1I	TTAA	3 cut(s)	402, 525, 610
Tru9I	TTAA	3 cut(s)	402, 525, 610
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	2 cut(s)	20, 44
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	3 cut(s)	95, 314, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.